mRNA_E-siliculosus-1a_F_contig1560.3230.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1560.3230.1
Unique NamemRNA_E-siliculosus-1a_F_contig1560.3230.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1560.3230.1 vs. uniprot
Match: D7G4A6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4A6_ECTSI)

HSP 1 Score: 235 bits (600), Expect = 1.720e-73
Identity = 125/139 (89.93%), Postives = 132/139 (94.96%), Query Frame = 1 
Query:   85 MSGSLGQHTGVIAAVVGGLVAVAATTAVARKWKSGGTKRGRMLGNIANGREFIDTLSAEVAELEATIALAAEASDFDTARKEHERKSREHDEHVTQVLTHLDKCTGGGDIGVARKKEIHRAEALGLRISKILPGGPVDG 501
            MSGSLGQ+TGVIAAVV GLVAVA TTAVARKWKSGGTKR RMLGNIA+GREF+D LSAEVA+LEATIALAAEASD DTARKE+ERKSREHDEHVTQVLTHLDKCTGG +IGVARKK+IHRAE LGLRISKILPGGPVDG
Sbjct:    1 MSGSLGQYTGVIAAVVCGLVAVAGTTAVARKWKSGGTKR-RMLGNIASGREFLDALSAEVADLEATIALAAEASDLDTARKENERKSREHDEHVTQVLTHLDKCTGGDEIGVARKKQIHRAEVLGLRISKILPGGPVDG 138
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BLAST of mRNA_E-siliculosus-1a_F_contig1560.3230.1 vs. uniprot
Match: A0A6H5JHT5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT5_9PHAE)

HSP 1 Score: 232 bits (592), Expect = 2.740e-72
Identity = 125/139 (89.93%), Postives = 131/139 (94.24%), Query Frame = 1 
Query:   85 MSGSLGQHTGVIAAVVGGLVAVAATTAVARKWKSGGTKRGRMLGNIANGREFIDTLSAEVAELEATIALAAEASDFDTARKEHERKSREHDEHVTQVLTHLDKCTGGGDIGVARKKEIHRAEALGLRISKILPGGPVDG 501
            MSGSLGQHTGVIAAVV  LVAVAATTAVARKWKSGG+KR RMLGNIA+GREFIDTLSAEVA+LEATIALAAEASD DTAR+EHERKSREHDE VTQVLTHLDKCTGGG+I VARKK+IHRAEALGLRIS ILPGG VDG
Sbjct:    1 MSGSLGQHTGVIAAVVFALVAVAATTAVARKWKSGGSKR-RMLGNIASGREFIDTLSAEVADLEATIALAAEASDLDTARQEHERKSREHDESVTQVLTHLDKCTGGGEISVARKKQIHRAEALGLRISNILPGGHVDG 138
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1560.3230.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G4A6_ECTSI1.720e-7389.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JHT5_9PHAE2.740e-7289.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1560contigE-siliculosus-1a_F_contig1560:17889..20665 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size420
Model size1283
Exons4
Ec32 orthologEc-02_001960.1
Ec32 ortholog descriptionexpressed unknown protein
Hectar predicted targeting categorysignal peptide
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1560.3230.1prot_E-siliculosus-1a_F_contig1560.3230.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1560 18668..20581 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928072.3547747-UTR-E-siliculosus-1a_F_contig1560:17888..186671622928072.3547747-UTR-E-siliculosus-1a_F_contig1560:17888..18667Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1560 17889..18667 -
1696318795.4080048-UTR-E-siliculosus-1a_F_contig1560:17888..186671696318795.4080048-UTR-E-siliculosus-1a_F_contig1560:17888..18667Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1560 17889..18667 -
1622928072.408996-UTR-E-siliculosus-1a_F_contig1560:20581..206651622928072.408996-UTR-E-siliculosus-1a_F_contig1560:20581..20665Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1560 20582..20665 -
1696318795.449154-UTR-E-siliculosus-1a_F_contig1560:20581..206651696318795.449154-UTR-E-siliculosus-1a_F_contig1560:20581..20665Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1560 20582..20665 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928072.3656812-CDS-E-siliculosus-1a_F_contig1560:18667..187361622928072.3656812-CDS-E-siliculosus-1a_F_contig1560:18667..18736Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1560 18668..18736 -
1696318795.4153779-CDS-E-siliculosus-1a_F_contig1560:18667..187361696318795.4153779-CDS-E-siliculosus-1a_F_contig1560:18667..18736Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1560 18668..18736 -
1622928072.3788192-CDS-E-siliculosus-1a_F_contig1560:19323..194281622928072.3788192-CDS-E-siliculosus-1a_F_contig1560:19323..19428Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1560 19324..19428 -
1696318795.4226172-CDS-E-siliculosus-1a_F_contig1560:19323..194281696318795.4226172-CDS-E-siliculosus-1a_F_contig1560:19323..19428Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1560 19324..19428 -
1622928072.3892617-CDS-E-siliculosus-1a_F_contig1560:19845..199591622928072.3892617-CDS-E-siliculosus-1a_F_contig1560:19845..19959Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1560 19846..19959 -
1696318795.4299557-CDS-E-siliculosus-1a_F_contig1560:19845..199591696318795.4299557-CDS-E-siliculosus-1a_F_contig1560:19845..19959Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1560 19846..19959 -
1622928072.3992295-CDS-E-siliculosus-1a_F_contig1560:20449..205811622928072.3992295-CDS-E-siliculosus-1a_F_contig1560:20449..20581Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1560 20450..20581 -
1696318795.4407868-CDS-E-siliculosus-1a_F_contig1560:20449..205811696318795.4407868-CDS-E-siliculosus-1a_F_contig1560:20449..20581Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1560 20450..20581 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1560.3230.1

>prot_E-siliculosus-1a_F_contig1560.3230.1 ID=prot_E-siliculosus-1a_F_contig1560.3230.1|Name=mRNA_E-siliculosus-1a_F_contig1560.3230.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=140bp
MSGSLGQHTGVIAAVVGGLVAVAATTAVARKWKSGGTKRGRMLGNIANGR
EFIDTLSAEVAELEATIALAAEASDFDTARKEHERKSREHDEHVTQVLTH
LDKCTGGGDIGVARKKEIHRAEALGLRISKILPGGPVDG*
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mRNA from alignment at E-siliculosus-1a_F_contig1560:17889..20665-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1560.3230.1 ID=mRNA_E-siliculosus-1a_F_contig1560.3230.1|Name=mRNA_E-siliculosus-1a_F_contig1560.3230.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2777bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1560:17889..20665- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GTCGACGGCAGCCGCAAGAACAGGGATCACTCATTTTCGCTGGCAAGCTG
CACGCGTTGCTGGTTGGTGGCGGACAGAAGGGCGATGAGCGGGTCCTTGG
GACAGCACACGGGTGTGATTGCGGCGGTCGTGGGCGGCCTCGTTGCCGTT
GCTGCTACTACAGCTGTCGCCCGCAAGTGGAAGAGTGGGGGCACCAAGAG
AGGACGCATGCTGGGGGTGAGCACACGGAGGTCTTGCAGGCGGGAATGGT
GATGAGTAGCTGCCACGTCACGCCCCGCATTATGCGTACTAGTACAGCAC
TGGCAGCAACAGCAGCGACGAACTTTTTCAAGGGTTGGATGCAGGGCGAT
TGCCCCGCTCCTTGTCAACCAAGCAACCAACATGACTGTCTTTCCGTGCT
GTCCTTCACGTTCTTGTACGTGCAGGTTTTCCCCCGCGTAATCCGTCGTA
GCCCACGGCCACGGCTTCTTTGGAAAACAGTTTCACAGATACAGCTTGGA
CGTGTCTGCAGTCCCTCTAGGAGATGTCATGACTGCTGTGAATTGATTGC
GGCAACGATCGTTTCCGCGTGTCGTGGAGTGGATCACCCCCTACACTAAC
GTTAGTTTCCTCTCGCGGTGCCTGAACCACTGCTGTACTATGTATATACA
TTGATCTCCATGCTGTTCCTGTGCTCCTGTGTTATCGCCGTTGCTGGTCG
CCTCAGAACATCGCTAATGGTCGCGAATTTATCGATACGCTATCGGCAGA
GGTGGCGGAATTGGAGGCTACCATTGCTCTGGCAGCCGAGGCTTCCGACT
TCGACACTGCACGAAAAGAAGTAAGCCGTTCAGATGCTAACACAAACGTG
TTGGGGTTCATGACATGCTGGGAATTTTCGGGTTTTAATCCAGGTAATTT
TTAGCCGCCAGCCGTTGCACCAGCTTCACGTTGCTGCAAGCTAGCCTGGC
CCCTTCAAGAATCAAGTAGGTCAGGAGGGGGTAGCCCTGTAGGATTGTTG
CTACTGGTATTGACGTTGGTCTGTTCTTGTTCTTGTTCGTTGTGCCTAAA
ACAGGGGTAGCGCAAAGACTGCACAGATGATCGGTCTCTTCGTCTCATTA
TCTCACGTTTCTGGGGAATTGCGGTTCGTCTCATCACAAGTTACCTTTGG
CTTTGAGCATCAAACAAACACCCGCCCGCCCACTCTCGTCCCTCGTTCCC
GCCGCGGCCCTTCCCTTGCCTCCAAACCTCCGCGAAGCACGAGAGAAAAA
GCAGAGAGCATGACGAGCACGTGACTCAGGTTTTGACGCACCTGGACAAG
TGCACGGGGGGTGGCGACATAGGCGTCGCCCGAAAAAAGGAGGTGATGAA
TGAACCCAGCAATTCTGGGGAATGTTTTCACCAGTCTTCCTTTTCGACCC
GGGCAAGCAGTACCGTTGTTCACGCTAGTTTGCCTATACCTGTTGCCGAG
CCATGGTGCGGTACGCAGCGGCCACGACAGAACCACATGGCTTGCCCGTC
GATTGCGACGCTTTCTCGACCGGCAAAATTTCGTTTTCAGCGGGCTGACC
GCTTTCATGAAACTATTTGTAGCACAATCTGCTTATTTTCTGCTCATGTG
TTGTCGGCCAGCGACTCGGCGCTCGTATTCCACGTGGCGCACTCTTGCGG
TCGTTTCGGCCAAGACGTTTTAGCTACTGTAGCCTTCGACCAATTCCAGC
GTGGAAACATCATTTCGTGCTGCTGCTGCCGCCGCCGCCGCCGACTCTGA
CGCTAAACCCGCTCCCGAGCTCTACCAGTTGGACGCAGTCGAAAACACGC
AACATCCTCAAATCAACAAGTGAACGGCCGTTCCACCAGAGTTATTGTCG
CGGGCGATGCACACAGAATACAGTACACCCCTAATTGTGGAGTGATTGTC
TTCATCTTGTGTCCGGCATTTTGTGGCAGATCCATCGAGCAGAGGCGTTG
GGGCTTCGCATCAGCAAGATTTTGCCTGGGGGCCCCGTGGATGGATGATC
AGAGGGAAACGGGGCGCAATGTGTTGGACCCATCAGCGAGCGTCTCCCCA
GGATATTCGAACCTTTTACACCCCTGTATGGACGGGAGCGCTTCTGCGTC
TGCTCGTGTTTTGCATCACTTCCTTGGCAAAGGTCCGTCATCAAGCGCTT
GCTTTCTGAAGAATATCATTGTAAAGGGTGCACAGCAGTACTGTTGTTGC
TGTTGTGGTTGGTCGTGTTGGTCATGGGTGTTGCATGTTGTAACGAATAT
ACTGTAGTCGGTTTATGGTGGATGGGTCTGCCATTTTCAGGGCCGGTAGC
GCACCTTCACTGTGCATTGAGCAGCAAATGACATGCTCAGCAGCGGCCAA
GCACCACATTCAAGTCACAGATGGAGGCTAGAGGCCGAAATCGAGCCCGA
TCCCTCTTTCCCCCTTTAGAGATGTGTGTACATTCTGTGTGTTTCCCTAT
GATTTACGTTCGTGCGCCTTTGGTTTTGCGCCGGTGTGGTGTGTTTCATC
CGTGTTCGTGCAGTTTTCATAGCGTTTGGCGCTCTATCCCGCGAGGCGTT
CGTCAAAGGCGACGCGCGAGAATTGGTAGATGTGTTATGCACTACTCTCT
CGGGACCTGGCTGTTCTTCTGTTTGGCATGTTCAAGCTCTTCCGACCGCA
TGCCCCACTTTTACCCGAAACTGGCAGCTTCGCGTGAAACTACCATGGTA
CATGCCTTCTGTTGTGAAAAAGCAAAATATTTTGGTATGACCAGCTCGAT
CGGTTTGAGGACGGACGCGTTTTCCCC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1560:17889..20665-

>mRNA_E-siliculosus-1a_F_contig1560.3230.1 ID=mRNA_E-siliculosus-1a_F_contig1560.3230.1|Name=mRNA_E-siliculosus-1a_F_contig1560.3230.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=840bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1560:17889..20665- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAGCGGGTCCTTGGGACAGCACACGGGTGTGATTGCGGCGGTCGTGGG
CGGCCTCGTTGCCGTTGCTGCTACTACAGCTGTCGCCCGCAAGTGGAAGA
GTGGGGGCACCAAGAGAGGACGCATGCTGGGGATGAGCGGGTCCTTGGGA
CAGCACACGGGTGTGATTGCGGCGGTCGTGGGCGGCCTCGTTGCCGTTGC
TGCTACTACAGCTGTCGCCCGCAAGTGGAAGAGTGGGGGCACCAAGAGAG
GACGCATGCTGGGGAACATCGCTAATGGTCGCGAATTTATCGATACGCTA
TCGGCAGAGGTGGCGGAATTGGAGGCTACCATTGCTCTGGCAGCCGAGGC
TTCCGACTTCGACACTGCACGAAAAGAAAACATCGCTAATGGTCGCGAAT
TTATCGATACGCTATCGGCAGAGGTGGCGGAATTGGAGGCTACCATTGCT
CTGGCAGCCGAGGCTTCCGACTTCGACACTGCACGAAAAGAACACGAGAG
AAAAAGCAGAGAGCATGACGAGCACGTGACTCAGGTTTTGACGCACCTGG
ACAAGTGCACGGGGGGTGGCGACATAGGCGTCGCCCGAAAAAAGGAGCAC
GAGAGAAAAAGCAGAGAGCATGACGAGCACGTGACTCAGGTTTTGACGCA
CCTGGACAAGTGCACGGGGGGTGGCGACATAGGCGTCGCCCGAAAAAAGG
AGATCCATCGAGCAGAGGCGTTGGGGCTTCGCATCAGCAAGATTTTGCCT
GGGGGCCCCGTGGATGGATGAATCCATCGAGCAGAGGCGTTGGGGCTTCG
CATCAGCAAGATTTTGCCTGGGGGCCCCGTGGATGGATGA
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