prot_E-siliculosus-1a_F_contig1552.3199.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig1552.3199.1
Unique Nameprot_E-siliculosus-1a_F_contig1552.3199.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length339
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1552.3199.1 vs. uniprot
Match: A0A6H5KAF9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAF9_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 8.950e-23
Identity = 85/158 (53.80%), Postives = 97/158 (61.39%), Query Frame = 0 
Query:    1 RCDAPGCQRQPTYGNKGDKRPRFCSTHKHPGMYDVIARRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKYRVYGYDGKPAVCXXXXXXXXXXXXXXXXXXXXXXXXXXSFGHRWEKKRRFCGRHKLPDMLDVRSRNQSQKAA 158
            RC+  GC  +  +  +G+K  +FC+ HK  GM ++ ++                                              KYRVYGYDGKPAVCXXXXXXXXXXXXXXXXXXXXXXXXXXSFGHRWEKKRRFCGRHKLPDM+DVRSRNQSQKAA
Sbjct:    8 RCEHEGCLTRAAFNFRGEKTVKFCAAHKQEGMENLKSK--------------------------------------CCEAEGCKKYRVYGYDGKPAVCXXXXXXXXXXXXXXXXXXXXXXXXXXSFGHRWEKKRRFCGRHKLPDMMDVRSRNQSQKAA 127
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BLAST of mRNA_E-siliculosus-1a_F_contig1552.3199.1 vs. uniprot
Match: D8LM63_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM63_ECTSI)

HSP 1 Score: 61.6 bits (148), Expect = 5.560e-7
Identity = 206/256 (80.47%), Postives = 207/256 (80.86%), Query Frame = 0 
Query:   85 KYRVYGYDGKPAVCXXXXXXXXXXXXXXXXXXXXXXXXXXSFGHRWEKKRRFCGRHKLPDMLDVRSRNQSQKAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGVIPGSAEDVKPSSFFGGGRGTTAPSS--LPLLGAGQDERAWMGVAGISAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGREARKRGRGAAGKRGR 338
            KYRVYGYDGKPAVCXXXXXXXXXXXXXXXXXXXXXXXXXXSFGH                     SRNQSQKAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   VIPGS EDVKP                 LPLLGAGQ+ERAWMGVAGIS  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     GREARKRGRGAAGKRGR
Sbjct:  128 KYRVYGYDGKPAVCXXXXXXXXXXXXXXXXXXXXXXXXXXSFGH---------------------SRNQSQKAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---VIPGSGEDVKPXXXXXXXXXXXXXXXXXLPLLGAGQEERAWMGVAGISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA----GREARKRGRGAAGKRGR 355
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1552.3199.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KAF9_9PHAE8.950e-2353.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LM63_ECTSI5.560e-780.47EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1552contigE-siliculosus-1a_F_contig1552:28867..30947 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1552.3199.1mRNA_E-siliculosus-1a_F_contig1552.3199.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig1552 28867..30947 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig1552.3199.1 ID=prot_E-siliculosus-1a_F_contig1552.3199.1|Name=mRNA_E-siliculosus-1a_F_contig1552.3199.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=339bp
RCDAPGCQRQPTYGNKGDKRPRFCSTHKHPGMYDVIARRCEHEGCLTRAA
FNFRGEKVVKFCAAHKQEGMENLKSKCCEAEGCKKYRVYGYDGKPAVCCA
SHKKEGMVDVRSSRCEFEGCYRHPSFGHRWEKKRRFCGRHKLPDMLDVRS
RNQSQKAAGGGAAAAKGGRGGRGGGGGGGGGAASKPAAAAGAAPKGGRGG
TGRKRRPAATAAAAAAAAASSPGGDGVIPGSAEDVKPSSFFGGGRGTTAP
SSLPLLGAGQDERAWMGVAGISAPPPPPPGGGGKPAAAAAAAGDVIGNGD
DSGSSSNGPQSGEAAAGAAAAGREARKRGRGAAGKRGR*
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