mRNA_E-siliculosus-1a_F_contig1552.3199.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1552.3199.1
Unique NamemRNA_E-siliculosus-1a_F_contig1552.3199.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1552.3199.1 vs. uniprot
Match: A0A6H5KAF9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAF9_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 8.950e-23
Identity = 85/158 (53.80%), Postives = 97/158 (61.39%), Query Frame = 1 
Query:    1 RCDAPGCQRQPTYGNKGDKRPRFCSTHKHPGMYDVIARRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKYRVYGYDGKPAVCXXXXXXXXXXXXXXXXXXXXXXXXXXSFGHRWEKKRRFCGRHKLPDMLDVRSRNQSQKAA 474
            RC+  GC  +  +  +G+K  +FC+ HK  GM ++ ++                                              KYRVYGYDGKPAVCXXXXXXXXXXXXXXXXXXXXXXXXXXSFGHRWEKKRRFCGRHKLPDM+DVRSRNQSQKAA
Sbjct:    8 RCEHEGCLTRAAFNFRGEKTVKFCAAHKQEGMENLKSK--------------------------------------CCEAEGCKKYRVYGYDGKPAVCXXXXXXXXXXXXXXXXXXXXXXXXXXSFGHRWEKKRRFCGRHKLPDMMDVRSRNQSQKAA 127
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BLAST of mRNA_E-siliculosus-1a_F_contig1552.3199.1 vs. uniprot
Match: D8LM63_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM63_ECTSI)

HSP 1 Score: 61.6 bits (148), Expect = 5.560e-7
Identity = 206/256 (80.47%), Postives = 207/256 (80.86%), Query Frame = 1 
Query:  253 KYRVYGYDGKPAVCXXXXXXXXXXXXXXXXXXXXXXXXXXSFGHRWEKKRRFCGRHKLPDMLDVRSRNQSQKAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGVIPGSAEDVKPSSFFGGGRGTTAPSS--LPLLGAGQDERAWMGVAGISAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGREARKRGRGAAGKRGR 1014
            KYRVYGYDGKPAVCXXXXXXXXXXXXXXXXXXXXXXXXXXSFGH                     SRNQSQKAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   VIPGS EDVKP                 LPLLGAGQ+ERAWMGVAGIS  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     GREARKRGRGAAGKRGR
Sbjct:  128 KYRVYGYDGKPAVCXXXXXXXXXXXXXXXXXXXXXXXXXXSFGH---------------------SRNQSQKAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---VIPGSGEDVKPXXXXXXXXXXXXXXXXXLPLLGAGQEERAWMGVAGISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA----GREARKRGRGAAGKRGR 355
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1552.3199.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KAF9_9PHAE8.950e-2353.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LM63_ECTSI5.560e-780.47EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1552contigE-siliculosus-1a_F_contig1552:28867..30947 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size1017
Model size1017
Exons3
Ec32 orthologEc-18_002620.1
Ec32 ortholog descriptionEsV-1-7 domain protein
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
EggNOG OGs29ZCP@1,2RXW0@2759
Seed eggNOG ortholog2880.D8LM63
Seed ortholog evalue8.1e-07
Seed ortholog score61.6
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1552.3199.1prot_E-siliculosus-1a_F_contig1552.3199.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1552 28867..30947 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928064.8425426-CDS-E-siliculosus-1a_F_contig1552:28866..294181622928064.8425426-CDS-E-siliculosus-1a_F_contig1552:28866..29418Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1552 28867..29418 -
1696318792.6081142-CDS-E-siliculosus-1a_F_contig1552:28866..294181696318792.6081142-CDS-E-siliculosus-1a_F_contig1552:28866..29418Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1552 28867..29418 -
1622928065.055604-CDS-E-siliculosus-1a_F_contig1552:30167..303951622928065.055604-CDS-E-siliculosus-1a_F_contig1552:30167..30395Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1552 30168..30395 -
1696318792.61704-CDS-E-siliculosus-1a_F_contig1552:30167..303951696318792.61704-CDS-E-siliculosus-1a_F_contig1552:30167..30395Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1552 30168..30395 -
1622928065.0762427-CDS-E-siliculosus-1a_F_contig1552:30710..309471622928065.0762427-CDS-E-siliculosus-1a_F_contig1552:30710..30947Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1552 30711..30947 -
1696318792.6246662-CDS-E-siliculosus-1a_F_contig1552:30710..309471696318792.6246662-CDS-E-siliculosus-1a_F_contig1552:30710..30947Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1552 30711..30947 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1552.3199.1

>prot_E-siliculosus-1a_F_contig1552.3199.1 ID=prot_E-siliculosus-1a_F_contig1552.3199.1|Name=mRNA_E-siliculosus-1a_F_contig1552.3199.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=339bp
RCDAPGCQRQPTYGNKGDKRPRFCSTHKHPGMYDVIARRCEHEGCLTRAA
FNFRGEKVVKFCAAHKQEGMENLKSKCCEAEGCKKYRVYGYDGKPAVCCA
SHKKEGMVDVRSSRCEFEGCYRHPSFGHRWEKKRRFCGRHKLPDMLDVRS
RNQSQKAAGGGAAAAKGGRGGRGGGGGGGGGAASKPAAAAGAAPKGGRGG
TGRKRRPAATAAAAAAAAASSPGGDGVIPGSAEDVKPSSFFGGGRGTTAP
SSLPLLGAGQDERAWMGVAGISAPPPPPPGGGGKPAAAAAAAGDVIGNGD
DSGSSSNGPQSGEAAAGAAAAGREARKRGRGAAGKRGR*
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mRNA from alignment at E-siliculosus-1a_F_contig1552:28867..30947-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1552.3199.1 ID=mRNA_E-siliculosus-1a_F_contig1552.3199.1|Name=mRNA_E-siliculosus-1a_F_contig1552.3199.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2081bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1552:28867..30947- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
AGGTGCGATGCCCCTGGGTGTCAGCGGCAGCCCACTTACGGGAACAAGGG
GGACAAGCGGCCTCGCTTCTGCTCCACGCACAAGCACCCGGGCATGTACG
ACGTGATCGCGCGGCGCTGCGAGCACGAGGGGTGCCTGACGCGAGCGGCG
TTCAACTTCCGCGGGGAGAAGGTGGTGAAGTTCTGCGCCGCCCACAAGCA
GGAGGGGATGGAGAACCTCAAGAGCAAGTGCTGCGAGGTGGGCGAGAGTC
GTGCGTTGCGTTGGGTAGCGATTCTATTGTTAGTTGTTACTACTTATATC
ACTCGACCTTTTTTTTTTTGCAATTCCTGGTGGCGGATAATGGATGTTGG
GACCGAAACAAACAACAGAGGAATCAAACGTTTTTTTTGTAAATGTTCAG
GACAAAATAGTAGAACAAGTGTTGGGGACCAAAACAAACAACAGACGGAA
GTGTTCTTCAAAGTGGTCACACGAGGCAAAATGACAAACATTGGGACAAC
ACACCACTGCTGCTGTTGTTGTTATGGTTTTGGACACTAAAAACACTTAC
AGGCTGAGGGCTGCAAGAAGTACCGCGTCTACGGCTACGACGGCAAGCCG
GCCGTGTGCTGCGCCTCCCACAAGAAGGAAGGCATGGTAGACGTCCGCAG
CAGCCGGTGCGAGTTCGAGGGCTGCTACCGACACCCCAGCTTCGGCCACA
GGTGGGAGAAGAAGCGCCGGTTCTGCGGCCGACATAAGCTCCCCGACATG
TTGGACGTCCGCAGCCGCAACCAATCGCAGGTACATACAGCCGTGCACGT
TTTTTTTTTTTTTTTTTTTTTTACCGTTTTTTGATCGGAAGGGCGTCGTG
TTGGGGAAGAGGGTAGGTTTCGGTGGGGGCCGTATNNNNNNNNNNCACCC
CCCCCCCCCCTCTTTGCGCCCCCCGCCGCGCCCTCCGTGCGGGGGAAAAG
AGCGCCGTGCACGTTTTTTTTTTTTTTTTCATTCTAACCGTTTTTTTTTT
TTATGTGGTTTGAGCTCCTCGCTTCGTGCAGAGGGACCCCTCCGGTTGTC
TTTTCGTGCGTTTGCTTGTCGACCCTTTGTGTGATTTTTTTCGACTTGTG
ATTTTTTGTGAACAGCAACCCTCCCCCACCCCCACGTGAACTTGTGACGG
GAACGCGTTGTTGTTGTTGTTGTTGTTGTTGTTGTCTTCACGTTAAGACC
CGTTCCGGTCTCCGCTCAGTACCTTCTTATATCCGTTACCGATCCAACTT
GCGCGGGCGCCTTCCGTGATCAGTCACAGGCCAGCTACCTAAACGCGTGC
GACGTGTGTTTTGAGTGTTGTTGGTTGTGTGTTGTTTTGTTACTATTTAT
CTCTTGCGGGTGGGTGCCCGGTGGACACGCTAGTGCACGTACGTACGCGC
CTTTTGTTGTTCTCCTCGACGGACCTTGCTCAAGAAAGCCGTAACGCTCC
CCCGCTCTCTCATTGACGCCGCCGCAAACGTTCTTCGAACAACAACAACC
AACCAACCAACAAACCAACCAACCTCCAGAAAGCCGCCGGAGGCGGCGCC
GCAGCAGCCAAAGGGGGGCGCGGAGGGCGGGGCGGAGGGGGGGGTGGGGG
AGGGGGCGCCGCCTCCAAGCCTGCCGCGGCTGCGGGGGCGGCCCCGAAGG
GTGGGCGGGGCGGTACGGGGCGAAAACGCCGGCCAGCAGCAACGGCGGCG
GCGGCGGCGGCAGCAGCAGCGAGCTCTCCCGGCGGCGACGGCGTGATTCC
CGGGAGCGCGGAAGACGTCAAGCCGTCCTCGTTCTTTGGAGGAGGCCGCG
GCACGACGGCGCCCTCGTCGTTGCCGTTGTTGGGAGCTGGACAAGACGAA
CGGGCGTGGATGGGCGTCGCGGGTATTTCCGCGCCCCCCCCACCCCCACC
CGGAGGCGGCGGCAAGCCGGCGGCGGCGGCGGCGGCAGCCGGAGACGTTA
TCGGCAACGGTGACGACAGCGGCAGCAGTAGCAACGGCCCGCAGTCTGGC
GAAGCTGCGGCCGGCGCCGCCGCGGCCGGACGGGAGGCTCGGAAGCGCGG
CAGAGGGGCAGCCGGGAAGAGAGGGAGATGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1552:28867..30947-

>mRNA_E-siliculosus-1a_F_contig1552.3199.1 ID=mRNA_E-siliculosus-1a_F_contig1552.3199.1|Name=mRNA_E-siliculosus-1a_F_contig1552.3199.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2034bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1552:28867..30947- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
AGGTGCGATGCCCCTGGGTGTCAGCGGCAGCCCACTTACGGGAACAAGGG
GGACAAGCGGCCTCGCTTCTGCTCCACGCACAAGCACCCGGGCATGTACG
ACGTGATCGCGCGGCGCTGCGAGCACGAGGGGTGCCTGACGCGAGCGGCG
TTCAACTTCCGCGGGGAGAAGGTGGTGAAGTTCTGCGCCGCCCACAAGCA
GGAGGGGATGGAGAACCTCAAGAGCAAGTGCTGCGAGAGGTGCGATGCCC
CTGGGTGTCAGCGGCAGCCCACTTACGGGAACAAGGGGGACAAGCGGCCT
CGCTTCTGCTCCACGCACAAGCACCCGGGCATGTACGACGTGATCGCGCG
GCGCTGCGAGCACGAGGGGTGCCTGACGCGAGCGGCGTTCAACTTCCGCG
GGGAGAAGGTGGTGAAGTTCTGCGCCGCCCACAAGCAGGAGGGGATGGAG
AACCTCAAGAGCAAGTGCTGCGAGGCTGAGGGCTGCAAGAAGTACCGCGT
CTACGGCTACGACGGCAAGCCGGCCGTGTGCTGCGCCTCCCACAAGAAGG
AAGGCATGGTAGACGTCCGCAGCAGCCGGTGCGAGTTCGAGGGCTGCTAC
CGACACCCCAGCTTCGGCCACAGGTGGGAGAAGAAGCGCCGGTTCTGCGG
CCGACATAAGCTCCCCGACATGTTGGACGTCCGCAGCCGCAACCAATCGC
AGGCTGAGGGCTGCAAGAAGTACCGCGTCTACGGCTACGACGGCAAGCCG
GCCGTGTGCTGCGCCTCCCACAAGAAGGAAGGCATGGTAGACGTCCGCAG
CAGCCGGTGCGAGTTCGAGGGCTGCTACCGACACCCCAGCTTCGGCCACA
GGTGGGAGAAGAAGCGCCGGTTCTGCGGCCGACATAAGCTCCCCGACATG
TTGGACGTCCGCAGCCGCAACCAATCGCAGAAAGCCGCCGGAGGCGGCGC
CGCAGCAGCCAAAGGGGGGCGCGGAGGGCGGGGCGGAGGGGGGGGTGGGG
GAGGGGGCGCCGCCTCCAAGCCTGCCGCGGCTGCGGGGGCGGCCCCGAAG
GGTGGGCGGGGCGGTACGGGGCGAAAACGCCGGCCAGCAGCAACGGCGGC
GGCGGCGGCGGCAGCAGCAGCGAGCTCTCCCGGCGGCGACGGCGTGATTC
CCGGGAGCGCGGAAGACGTCAAGCCGTCCTCGTTCTTTGGAGGAGGCCGC
GGCACGACGGCGCCCTCGTCGTTGCCGTTGTTGGGAGCTGGACAAGACGA
ACGGGCGTGGATGGGCGTCGCGGGTATTTCCGCGCCCCCCCCACCCCCAC
CCGGAGGCGGCGGCAAGCCGGCGGCGGCGGCGGCGGCAGCCGGAGACGTT
ATCGGCAACGGTGACGACAGCGGCAGCAGTAGCAACGGCCCGCAGTCTGG
CGAAGCTGCGGCCGGCGCCGCCGCGGCCGGACGGGAGGCTCGGAAGCGCG
GCAGAGGGGCAGCCGGGAAGAGAGGGAGATGAAAAGCCGCCGGAGGCGGC
GCCGCAGCAGCCAAAGGGGGGCGCGGAGGGCGGGGCGGAGGGGGGGGTGG
GGGAGGGGGCGCCGCCTCCAAGCCTGCCGCGGCTGCGGGGGCGGCCCCGA
AGGGTGGGCGGGGCGGTACGGGGCGAAAACGCCGGCCAGCAGCAACGGCG
GCGGCGGCGGCGGCAGCAGCAGCGAGCTCTCCCGGCGGCGACGGCGTGAT
TCCCGGGAGCGCGGAAGACGTCAAGCCGTCCTCGTTCTTTGGAGGAGGCC
GCGGCACGACGGCGCCCTCGTCGTTGCCGTTGTTGGGAGCTGGACAAGAC
GAACGGGCGTGGATGGGCGTCGCGGGTATTTCCGCGCCCCCCCCACCCCC
ACCCGGAGGCGGCGGCAAGCCGGCGGCGGCGGCGGCGGCAGCCGGAGACG
TTATCGGCAACGGTGACGACAGCGGCAGCAGTAGCAACGGCCCGCAGTCT
GGCGAAGCTGCGGCCGGCGCCGCCGCGGCCGGACGGGAGGCTCGGAAGCG
CGGCAGAGGGGCAGCCGGGAAGAGAGGGAGATGA
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