prot_E-siliculosus-1a_F_contig1543.3144.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig1543.3144.1
Unique Nameprot_E-siliculosus-1a_F_contig1543.3144.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length235
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1543.3144.1 vs. uniprot
Match: A0A6H5JT49_9PHAE (LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT49_9PHAE)

HSP 1 Score: 454 bits (1168), Expect = 2.720e-161
Identity = 226/234 (96.58%), Postives = 228/234 (97.44%), Query Frame = 0 
Query:    1 MGREITLMILGLIAGCGGFAVPPTARRLRPNAARGCWRTPPRNGCHPSTSSRSSSAARIEMSIREMIGADVESGGLFDPLGFSKDEPSLFRRRAVELKHGRVAMLAVTGILVQSFVRFPGFPPFPVSNPARPLAVLKGLLSTEGNNVVLFLLGIGVVELTIGKQDYVDRAPGELGEFGAFAKPVDKEEWDKVQMAELKHGRLAMLGVVGCLVQELVTGEGPVEQLLNGNIFPFA 234
            MGREITLM+LGLIAGCGGFAVPPTARRLRPNAARGCWR P +NGCH ST SRSSSAARIEMSIREMIGADVESGGLFDPLGFSKDEPSLFRRRAVELKHGRVAMLAVTGILVQSFV FPGFPPFPVSNPARPLAVLKGLLSTEGNNVVLFLLG GVVELTIGKQDYVDRAPGELGEFGAFAKPVDKEEWDKVQMAELKHGRLAMLGVVGCLVQELVTGEGPVEQLLNGNIFPFA
Sbjct:    1 MGREITLMMLGLIAGCGGFAVPPTARRLRPNAARGCWRRPSQNGCHSSTRSRSSSAARIEMSIREMIGADVESGGLFDPLGFSKDEPSLFRRRAVELKHGRVAMLAVTGILVQSFVHFPGFPPFPVSNPARPLAVLKGLLSTEGNNVVLFLLGTGVVELTIGKQDYVDRAPGELGEFGAFAKPVDKEEWDKVQMAELKHGRLAMLGVVGCLVQELVTGEGPVEQLLNGNIFPFA 234
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1543.3144.1 vs. uniprot
Match: A0A835ZIK7_9STRA (Chlorophyll a/b-binding protein domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIK7_9STRA)

HSP 1 Score: 190 bits (482), Expect = 1.270e-57
Identity = 93/183 (50.82%), Postives = 129/183 (70.49%), Query Frame = 0 
Query:   52 RSSSAARIEMSIREMIGADVESGGLFDPLGFSKDEPSLFRRRAVELKHGRVAMLAVTGILVQSFVRFPGFPPFPVSNPARPLAVLKGLLSTEGNNVVLFLLGIGVVELTIGKQDYVDRAPGELGEFGAFAKPVDKEEWDKVQMAELKHGRLAMLGVVGCLVQELVTGEGPVEQLLNGNIFPFA 234
            RS++AA   M++++M+GAD+E+ G++DPL  SKD+ +LF+ R VELKHGRVAMLA  G+LVQSF   P     PV +  RPLA L  +L+          L +G  EL+IGKQDY ++APG++  FG F KP D++EW+K+Q+ ELK+GRLAM+  +G  VQE +TG+GP+EQL  G+I PF 
Sbjct:    4 RSAAAAVTRMAVQDMLGADIETSGVWDPLRLSKDDGNLFKYREVELKHGRVAMLATLGVLVQSFNHLPD----PVFSNPRPLAALSQILAERPVAFWQIFLAVGAFELSIGKQDYENKAPGDIATFGDFVKPSDEDEWEKIQLRELKNGRLAMVASIGMFVQEALTGQGPIEQLQVGHISPFG 182
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1543.3144.1 vs. uniprot
Match: A0A835ZAI4_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAI4_9STRA)

HSP 1 Score: 189 bits (481), Expect = 4.330e-57
Identity = 98/178 (55.06%), Postives = 125/178 (70.22%), Query Frame = 0 
Query:   57 ARIEMSIREMIGADVESGGLFDPLGFSKDEPSLFRRRAVELKHGRVAMLAVTGILVQSFVRFPGFPPFPVSNPARPLAVLKGLLSTEGNNVVLFLLGIGVVELTIGKQDYVDRAPGELGEFGAFAKPVDKEEWDKVQMAELKHGRLAMLGVVGCLVQELVTGEGPVEQLLNGNIFPFA 234
            A   MS+ +M+G DVE+GGLFDPLGFSKDE SLFRRRAVELKHGR+ MLA  G+LVQ++V  P       SNP RP+  L  +L       +  LL IG++ELT G QDY ++APG+LG FG   KP D  E  ++Q+ ELK+GRLAM+G++G LVQE +T +GP+EQLL G+  PF 
Sbjct:   37 AVTRMSVEDMVGIDVETGGLFDPLGFSKDEASLFRRRAVELKHGRICMLATFGVLVQTYVHLPDAV---FSNP-RPIGALLQVLDQRPVAAIQILLAIGLLELTAGAQDYANKAPGDLGRFGDAFKPDDAGELAELQLKELKNGRLAMMGIMGMLVQEGLTKQGPIEQLLVGHTSPFG 210
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1543.3144.1 vs. uniprot
Match: W7U405_9STRA (Light-harvesting protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U405_9STRA)

HSP 1 Score: 178 bits (451), Expect = 1.080e-52
Identity = 96/186 (51.61%), Postives = 124/186 (66.67%), Query Frame = 0 
Query:   49 TSSRSSSAARIEMSIREMIGADVESGGLFDPLGFSKDEPSLFRRRAVELKHGRVAMLAVTGILVQSFVRFPGFPPFPVSNPARPLAVLKGLLSTEGNNVVLFLLGIGVVELTIGKQDYVDRAPGELGEFGAFAKPVDKEEWDKVQMAELKHGRLAMLGVVGCLVQELVTGEGPVEQLLNGNIFPFA 234
            T+ R +    + M++ EMIG+DVE+ G+FDPLG +KDE SL+R R +ELKHGRVAMLA  G LVQSF   P       SNP RPLA L  + S          L IG +ELTIGKQD  +RAPG++G FGA   P D E++  +Q+ ELK+GRLAM+ ++G  VQE +TG+GP+EQLL G+  PF 
Sbjct:   20 TAPRMTRGRSVRMAVNEMIGSDVETNGVFDPLGLAKDEASLYRSRLIELKHGRVAMLACLGTLVQSFYHLPDEV---FSNP-RPLAALAQVYSERPVAFWQIFLAIGAIELTIGKQDTANRAPGDVG-FGAAFIPDDAEDFAALQLKELKNGRLAMMAIIGQFVQEKLTGQGPIEQLLEGHFSPFG 200
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1543.3144.1 vs. uniprot
Match: W7TRI0_9STRA (Light-harvesting protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TRI0_9STRA)

HSP 1 Score: 173 bits (439), Expect = 2.680e-51
Identity = 94/174 (54.02%), Postives = 120/174 (68.97%), Query Frame = 0 
Query:   61 MSIREMIGADVESGGLFDPLGFSKDEPSLFRRRAVELKHGRVAMLAVTGILVQSFVRFPGFPPFPVSNPARPLAVLKGLLSTEGNNVVLFLLGIGVVELTIGKQDYVDRAPGELGEFGAFAKPVDKEEWDKVQMAELKHGRLAMLGVVGCLVQELVTGEGPVEQLLNGNIFPFA 234
            MS  +MIG DVE+GGLFDPLGFSKDE SL++ R VELKHGRVAMLA  G LVQS+   P       SNP RPL  L  LLS     ++  ++ I ++E+T GKQD  + APG+LG FG   KP  + E   VQ+ ELK+GRLAM+ ++G  VQEL+TG+GP+EQ+ +G+I PF 
Sbjct:    1 MSASDMIGIDVETGGLFDPLGFSKDEQSLYKYRQVELKHGRVAMLACLGTLVQSYTHLPDDV---FSNP-RPLGALGQLLSERPLAILQIVIAITLIEVTSGKQD-PELAPGQLGRFGEAFKPEGEAEMAAVQLKELKNGRLAMVAIIGQWVQELLTGQGPIEQITSGHISPFG 169
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1543.3144.1 vs. uniprot
Match: A0A6H5KVZ6_9PHAE (LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVZ6_9PHAE)

HSP 1 Score: 172 bits (436), Expect = 3.740e-50
Identity = 96/177 (54.24%), Postives = 117/177 (66.10%), Query Frame = 0 
Query:   63 IREMIGADVESGGLFDPLGFSKDEPSLFRRRAVELKHGRVAMLAVTGILVQSFVRFPGFPPFPVSNPARPLAVLKGLLSTEGNNVVLFLLGI----GVVELTIGKQDY--VDRAPGELGEFGAFAKPVDKEEWDKVQMAELKHGRLAMLGVVGCLVQELVTGEGPVEQLLNGNIFPF 233
            + EM+GA  E+GG+FDPLG + DE SL+RRR  ELKHGRV MLA  G+LVQSFV+FP       SN  RPL    G L        + LLGI    G++ELTIG++DY   +  PG+LGE    A+P D + W + Q+ ELKHGRLA LG+ G L QELVT EGPVEQLL G+I PF
Sbjct:   53 VSEMVGASEETGGVFDPLGLATDETSLYRRRVAELKHGRVCMLATVGVLVQSFVQFPDPDRSAFSN-TRPL----GALFQVWRERPVILLGIVALMGLIELTIGREDYGSSEAEPGKLGELWQTARPEDPQLWRRRQLQELKHGRLASLGITGMLAQELVTHEGPVEQLLKGDINPF 224
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1543.3144.1 vs. uniprot
Match: D8LBT8_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBT8_ECTSI)

HSP 1 Score: 170 bits (431), Expect = 3.950e-50
Identity = 95/174 (54.60%), Postives = 116/174 (66.67%), Query Frame = 0 
Query:   66 MIGADVESGGLFDPLGFSKDEPSLFRRRAVELKHGRVAMLAVTGILVQSFVRFPGFPPFPVSNPARPLAVLKGLLSTEGNNVVLFLLGI----GVVELTIGKQDY--VDRAPGELGEFGAFAKPVDKEEWDKVQMAELKHGRLAMLGVVGCLVQELVTGEGPVEQLLNGNIFPF 233
            M+GA  E+GG+FDPLG + DE SL+RRR  ELKHGRV MLA  G+LVQSFV+FP       SN  RPL    G L        + LLGI    G++ELTIG++DY   +  PG+LG+F   A+P D + W + Q+ ELKHGRLA LG+ G L QELVT EGPVEQLL G+I PF
Sbjct:    1 MVGASEETGGVFDPLGLATDETSLYRRRVAELKHGRVCMLATVGVLVQSFVQFPDPDRSAFSN-TRPL----GALFQVWRERPVILLGIVALMGLIELTIGREDYGSSEAEPGKLGDFWQAARPEDPQLWRRRQLQELKHGRLASLGITGMLAQELVTHEGPVEQLLKGDINPF 169
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1543.3144.1 vs. uniprot
Match: A0A0G4GDB0_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GDB0_VITBC)

HSP 1 Score: 171 bits (433), Expect = 7.180e-50
Identity = 93/176 (52.84%), Postives = 121/176 (68.75%), Query Frame = 0 
Query:   60 EMSIREMIGADVESGGLFDPLGFSKDEPSLFRRRAVELKHGRVAMLAVTGILVQSF-VRFPGFPPFPVSNPARPLAVLKGLLSTEGNNVVLFLLGIGVVELTIGKQDYVDRAPGELGEFGAFAKPVDKEEWDKVQMAELKHGRLAMLGVVGCLVQELVTGEGPVEQLLNGNIFPFA 234
            +MS+ EMIGADVE+GG+FDPL FS+DE SLFRRRAVELKHGR+AMLA  G  VQS  V  P     PV +  RPL+ L  +L+         +  I  +EL  G+QDY ++APG+LG FG   K  D EE+ K Q+ ELK+GRLAM+G++G +VQE +TG+   EQ+ +GNI PF+
Sbjct:   43 KMSVEEMIGADVETGGVFDPLKFSEDEASLFRRRAVELKHGRIAMLACLGYFVQSAGVHLPD----PVFSEPRPLSALTKVLTERPWAAAQIVAAIAAIELGPGRQDYENKAPGDLGYFGDSFKNSDPEEFRKDQLRELKNGRLAMIGIMGMMVQEGLTGQSVWEQIGSGNINPFS 214
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1543.3144.1 vs. uniprot
Match: D5KBP8_ELYCH (Light harvesting complex protein 3 (Fragment) n=4 Tax=Eukaryota TaxID=2759 RepID=D5KBP8_ELYCH)

HSP 1 Score: 162 bits (409), Expect = 3.820e-47
Identity = 80/148 (54.05%), Postives = 105/148 (70.95%), Query Frame = 0 
Query:   77 FDPLGFSKDEPSLFRRRAVELKHGRVAMLAVTGILVQSFVRFPGFPPFPVSNPARPLAVLKGLLSTEGNNVVLFLLGIGVVELTIGKQDYVDRAPGELGEFGAFAKPVDKEEWDKVQMAELKHGRLAMLGVVGCLVQELVTGEGPVEQ 224
            +DPLGFSKDE SLFRRR VELKHGR+ MLA  G+ VQ+ +  P     PV +  RP+  L  + +     +   +L IG +EL+IGKQDY ++APG+LG FG FAKP D  EW+KVQ+ ELK+GRLAM+ ++G LVQE +T +GP+EQ
Sbjct:    1 WDPLGFSKDEASLFRRRVVELKHGRICMLATLGVFVQNSIHLPD----PVFSNPRPIGALLQVFAERPIAIWQIILAIGAIELSIGKQDYENKAPGDLGSFGDFAKPSDPIEWEKVQLRELKNGRLAMMAIMGMLVQEGLTKQGPLEQ 144
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1543.3144.1 vs. uniprot
Match: A0A835Z571_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z571_9STRA)

HSP 1 Score: 164 bits (414), Expect = 4.930e-47
Identity = 88/176 (50.00%), Postives = 122/176 (69.32%), Query Frame = 0 
Query:   59 IEMSIREMIGADVESGGLFDPLGFSKDEPSLFRRRAVELKHGRVAMLAVTGILVQSFVRFPGFPPFPVSNPARPLAVLKGLLSTEGNNVVLFLLGIGVVELTIGKQDYVDRAPGELGEFGAFAKPVDKEEWDKVQMAELKHGRLAMLGVVGCLVQELVTGEGPVEQLLNGNIFPFA 234
            + MS+ E+IGAD E+GG++DP GF+KD+ +L++ R VELKHGRVAMLA  G+LVQSFV  P  P F  ++ ARP      L S+    +    L  G VEL + KQD  ++APG+LG FGA+  P  +EE + +Q+ ELK+GRLAM+ +VG  VQE +TG+GP+EQ+L G++ PF 
Sbjct:   38 LRMSVEELIGADTETGGVWDPAGFAKDDAALYKYREVELKHGRVAMLATLGVLVQSFVTLPD-PVF--ADGARPQTAAFELASSRPEALAQIFLACGAVELLVLKQD-PEKAPGDLG-FGAY--PDTEEELEVLQLKELKNGRLAMMAIVGMFVQEKLTGQGPIEQILAGHVSPFG 206
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1543.3144.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JT49_9PHAE2.720e-16196.58LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A835ZIK7_9STRA1.270e-5750.82Chlorophyll a/b-binding protein domain-containing ... [more]
A0A835ZAI4_9STRA4.330e-5755.06Light harvesting complex protein n=1 Tax=Tribonema... [more]
W7U405_9STRA1.080e-5251.61Light-harvesting protein n=2 Tax=Monodopsidaceae T... [more]
W7TRI0_9STRA2.680e-5154.02Light-harvesting protein n=1 Tax=Nannochloropsis g... [more]
A0A6H5KVZ6_9PHAE3.740e-5054.24LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D8LBT8_ECTSI3.950e-5054.60Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
A0A0G4GDB0_VITBC7.180e-5052.84Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
D5KBP8_ELYCH3.820e-4754.05Light harvesting complex protein 3 (Fragment) n=4 ... [more]
A0A835Z571_9STRA4.930e-4750.00Light harvesting complex protein n=1 Tax=Tribonema... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR023329Chlorophyll a/b binding domain superfamilyGENE3D1.10.3460.10coord: 66..233
e-value: 2.3E-34
score: 120.8
IPR022796Chlorophyll A-B binding proteinPFAMPF00504Chloroa_b-bindcoord: 74..214
e-value: 1.1E-26
score: 94.3
coord: 166..218
e-value: 1.5E-10
score: 41.8
IPR001344Chlorophyll A-B binding protein, plantPANTHERPTHR21649CHLOROPHYLL A/B BINDING PROTEINcoord: 77..227
coord: 73..117
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 17..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 5..16
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..4
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 21..234
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..16
score: 5.0
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..18
score: 0.624
NoneNo IPR availableSUPERFAMILY103511Chlorophyll a-b binding proteincoord: 73..232

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1543contigE-siliculosus-1a_F_contig1543:10291..13903 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1543.3144.1mRNA_E-siliculosus-1a_F_contig1543.3144.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig1543 10287..13952 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig1543.3144.1 ID=prot_E-siliculosus-1a_F_contig1543.3144.1|Name=mRNA_E-siliculosus-1a_F_contig1543.3144.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=235bp
MGREITLMILGLIAGCGGFAVPPTARRLRPNAARGCWRTPPRNGCHPSTS
SRSSSAARIEMSIREMIGADVESGGLFDPLGFSKDEPSLFRRRAVELKHG
RVAMLAVTGILVQSFVRFPGFPPFPVSNPARPLAVLKGLLSTEGNNVVLF
LLGIGVVELTIGKQDYVDRAPGELGEFGAFAKPVDKEEWDKVQMAELKHG
RLAMLGVVGCLVQELVTGEGPVEQLLNGNIFPFA*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001344Chloro_AB-bd_pln
IPR022796Chloroa_b-bind
IPR023329Chlorophyll_a/b-bd_dom_sf