mRNA_E-siliculosus-1a_F_contig1543.3144.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1543.3144.1
Unique NamemRNA_E-siliculosus-1a_F_contig1543.3144.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1543.3144.1 vs. uniprot
Match: A0A6H5JT49_9PHAE (LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT49_9PHAE)

HSP 1 Score: 452 bits (1164), Expect = 2.200e-160
Identity = 226/234 (96.58%), Postives = 228/234 (97.44%), Query Frame = 2 
Query:    5 MGREITLMILGLIAGCGGFAVPPTARRLRPNAARGCWRTPPRNGCHPSTSSRSSSAARIEMSIREMIGADVESGGLFDPLGFSKDEPSLFRRRAVELKHGRVAMLAVTGILVQSFVRFPGFPPFPVSNPARPLAVLKGLLSTEGNNVVLFLLGIGVVELTIGKQDYVDRAPGELGEFGAFAKPVDKEEWDKVQMAELKHGRLAMLGVVGCLVQELVTGEGPVEQLLNGNIFPFA 706
            MGREITLM+LGLIAGCGGFAVPPTARRLRPNAARGCWR P +NGCH ST SRSSSAARIEMSIREMIGADVESGGLFDPLGFSKDEPSLFRRRAVELKHGRVAMLAVTGILVQSFV FPGFPPFPVSNPARPLAVLKGLLSTEGNNVVLFLLG GVVELTIGKQDYVDRAPGELGEFGAFAKPVDKEEWDKVQMAELKHGRLAMLGVVGCLVQELVTGEGPVEQLLNGNIFPFA
Sbjct:    1 MGREITLMMLGLIAGCGGFAVPPTARRLRPNAARGCWRRPSQNGCHSSTRSRSSSAARIEMSIREMIGADVESGGLFDPLGFSKDEPSLFRRRAVELKHGRVAMLAVTGILVQSFVHFPGFPPFPVSNPARPLAVLKGLLSTEGNNVVLFLLGTGVVELTIGKQDYVDRAPGELGEFGAFAKPVDKEEWDKVQMAELKHGRLAMLGVVGCLVQELVTGEGPVEQLLNGNIFPFA 234
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BLAST of mRNA_E-siliculosus-1a_F_contig1543.3144.1 vs. uniprot
Match: A0A835ZIK7_9STRA (Chlorophyll a/b-binding protein domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIK7_9STRA)

HSP 1 Score: 188 bits (477), Expect = 1.300e-56
Identity = 93/182 (51.10%), Postives = 129/182 (70.88%), Query Frame = 2 
Query:  158 RSSSAARIEMSIREMIGADVESGGLFDPLGFSKDEPSLFRRRAVELKHGRVAMLAVTGILVQSFVRFPGFPPFPVSNPARPLAVLKGLLSTEGNNVVLFLLGIGVVELTIGKQDYVDRAPGELGEFGAFAKPVDKEEWDKVQMAELKHGRLAMLGVVGCLVQELVTGEGPVEQLLNGNIFPF 703
            RS++AA   M++++M+GAD+E+ G++DPL  SKD+ +LF+ R VELKHGRVAMLA  G+LVQSF   P     PV +  RPLA L  +L+          L +G  EL+IGKQDY ++APG++  FG F KP D++EW+K+Q+ ELK+GRLAM+  +G  VQE +TG+GP+EQL  G+I PF
Sbjct:    4 RSAAAAVTRMAVQDMLGADIETSGVWDPLRLSKDDGNLFKYREVELKHGRVAMLATLGVLVQSFNHLPD----PVFSNPRPLAALSQILAERPVAFWQIFLAVGAFELSIGKQDYENKAPGDIATFGDFVKPSDEDEWEKIQLRELKNGRLAMVASIGMFVQEALTGQGPIEQLQVGHISPF 181
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BLAST of mRNA_E-siliculosus-1a_F_contig1543.3144.1 vs. uniprot
Match: A0A835ZAI4_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAI4_9STRA)

HSP 1 Score: 187 bits (476), Expect = 4.420e-56
Identity = 98/177 (55.37%), Postives = 125/177 (70.62%), Query Frame = 2 
Query:  173 ARIEMSIREMIGADVESGGLFDPLGFSKDEPSLFRRRAVELKHGRVAMLAVTGILVQSFVRFPGFPPFPVSNPARPLAVLKGLLSTEGNNVVLFLLGIGVVELTIGKQDYVDRAPGELGEFGAFAKPVDKEEWDKVQMAELKHGRLAMLGVVGCLVQELVTGEGPVEQLLNGNIFPF 703
            A   MS+ +M+G DVE+GGLFDPLGFSKDE SLFRRRAVELKHGR+ MLA  G+LVQ++V  P       SNP RP+  L  +L       +  LL IG++ELT G QDY ++APG+LG FG   KP D  E  ++Q+ ELK+GRLAM+G++G LVQE +T +GP+EQLL G+  PF
Sbjct:   37 AVTRMSVEDMVGIDVETGGLFDPLGFSKDEASLFRRRAVELKHGRICMLATFGVLVQTYVHLPDAV---FSNP-RPIGALLQVLDQRPVAAIQILLAIGLLELTAGAQDYANKAPGDLGRFGDAFKPDDAGELAELQLKELKNGRLAMMGIMGMLVQEGLTKQGPIEQLLVGHTSPF 209
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BLAST of mRNA_E-siliculosus-1a_F_contig1543.3144.1 vs. uniprot
Match: W7U405_9STRA (Light-harvesting protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U405_9STRA)

HSP 1 Score: 176 bits (446), Expect = 1.090e-51
Identity = 96/185 (51.89%), Postives = 124/185 (67.03%), Query Frame = 2 
Query:  149 TSSRSSSAARIEMSIREMIGADVESGGLFDPLGFSKDEPSLFRRRAVELKHGRVAMLAVTGILVQSFVRFPGFPPFPVSNPARPLAVLKGLLSTEGNNVVLFLLGIGVVELTIGKQDYVDRAPGELGEFGAFAKPVDKEEWDKVQMAELKHGRLAMLGVVGCLVQELVTGEGPVEQLLNGNIFPF 703
            T+ R +    + M++ EMIG+DVE+ G+FDPLG +KDE SL+R R +ELKHGRVAMLA  G LVQSF   P       SNP RPLA L  + S          L IG +ELTIGKQD  +RAPG++G FGA   P D E++  +Q+ ELK+GRLAM+ ++G  VQE +TG+GP+EQLL G+  PF
Sbjct:   20 TAPRMTRGRSVRMAVNEMIGSDVETNGVFDPLGLAKDEASLYRSRLIELKHGRVAMLACLGTLVQSFYHLPDEV---FSNP-RPLAALAQVYSERPVAFWQIFLAIGAIELTIGKQDTANRAPGDVG-FGAAFIPDDAEDFAALQLKELKNGRLAMMAIIGQFVQEKLTGQGPIEQLLEGHFSPF 199
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BLAST of mRNA_E-siliculosus-1a_F_contig1543.3144.1 vs. uniprot
Match: W7TRI0_9STRA (Light-harvesting protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TRI0_9STRA)

HSP 1 Score: 171 bits (434), Expect = 2.690e-50
Identity = 94/173 (54.34%), Postives = 120/173 (69.36%), Query Frame = 2 
Query:  185 MSIREMIGADVESGGLFDPLGFSKDEPSLFRRRAVELKHGRVAMLAVTGILVQSFVRFPGFPPFPVSNPARPLAVLKGLLSTEGNNVVLFLLGIGVVELTIGKQDYVDRAPGELGEFGAFAKPVDKEEWDKVQMAELKHGRLAMLGVVGCLVQELVTGEGPVEQLLNGNIFPF 703
            MS  +MIG DVE+GGLFDPLGFSKDE SL++ R VELKHGRVAMLA  G LVQS+   P       SNP RPL  L  LLS     ++  ++ I ++E+T GKQD  + APG+LG FG   KP  + E   VQ+ ELK+GRLAM+ ++G  VQEL+TG+GP+EQ+ +G+I PF
Sbjct:    1 MSASDMIGIDVETGGLFDPLGFSKDEQSLYKYRQVELKHGRVAMLACLGTLVQSYTHLPDDV---FSNP-RPLGALGQLLSERPLAILQIVIAITLIEVTSGKQD-PELAPGQLGRFGEAFKPEGEAEMAAVQLKELKNGRLAMVAIIGQWVQELLTGQGPIEQITSGHISPF 168
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BLAST of mRNA_E-siliculosus-1a_F_contig1543.3144.1 vs. uniprot
Match: A0A6H5KVZ6_9PHAE (LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVZ6_9PHAE)

HSP 1 Score: 171 bits (432), Expect = 2.630e-49
Identity = 96/177 (54.24%), Postives = 117/177 (66.10%), Query Frame = 2 
Query:  191 IREMIGADVESGGLFDPLGFSKDEPSLFRRRAVELKHGRVAMLAVTGILVQSFVRFPGFPPFPVSNPARPLAVLKGLLSTEGNNVVLFLLGI----GVVELTIGKQDY--VDRAPGELGEFGAFAKPVDKEEWDKVQMAELKHGRLAMLGVVGCLVQELVTGEGPVEQLLNGNIFPF 703
            + EM+GA  E+GG+FDPLG + DE SL+RRR  ELKHGRV MLA  G+LVQSFV+FP       SN  RPL    G L        + LLGI    G++ELTIG++DY   +  PG+LGE    A+P D + W + Q+ ELKHGRLA LG+ G L QELVT EGPVEQLL G+I PF
Sbjct:   53 VSEMVGASEETGGVFDPLGLATDETSLYRRRVAELKHGRVCMLATVGVLVQSFVQFPDPDRSAFSN-TRPL----GALFQVWRERPVILLGIVALMGLIELTIGREDYGSSEAEPGKLGELWQTARPEDPQLWRRRQLQELKHGRLASLGITGMLAQELVTHEGPVEQLLKGDINPF 224
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BLAST of mRNA_E-siliculosus-1a_F_contig1543.3144.1 vs. uniprot
Match: D8LBT8_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBT8_ECTSI)

HSP 1 Score: 169 bits (427), Expect = 2.790e-49
Identity = 95/174 (54.60%), Postives = 116/174 (66.67%), Query Frame = 2 
Query:  200 MIGADVESGGLFDPLGFSKDEPSLFRRRAVELKHGRVAMLAVTGILVQSFVRFPGFPPFPVSNPARPLAVLKGLLSTEGNNVVLFLLGI----GVVELTIGKQDY--VDRAPGELGEFGAFAKPVDKEEWDKVQMAELKHGRLAMLGVVGCLVQELVTGEGPVEQLLNGNIFPF 703
            M+GA  E+GG+FDPLG + DE SL+RRR  ELKHGRV MLA  G+LVQSFV+FP       SN  RPL    G L        + LLGI    G++ELTIG++DY   +  PG+LG+F   A+P D + W + Q+ ELKHGRLA LG+ G L QELVT EGPVEQLL G+I PF
Sbjct:    1 MVGASEETGGVFDPLGLATDETSLYRRRVAELKHGRVCMLATVGVLVQSFVQFPDPDRSAFSN-TRPL----GALFQVWRERPVILLGIVALMGLIELTIGREDYGSSEAEPGKLGDFWQAARPEDPQLWRRRQLQELKHGRLASLGITGMLAQELVTHEGPVEQLLKGDINPF 169
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BLAST of mRNA_E-siliculosus-1a_F_contig1543.3144.1 vs. uniprot
Match: A0A0G4GDB0_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GDB0_VITBC)

HSP 1 Score: 169 bits (428), Expect = 7.140e-49
Identity = 93/176 (52.84%), Postives = 121/176 (68.75%), Query Frame = 2 
Query:  182 EMSIREMIGADVESGGLFDPLGFSKDEPSLFRRRAVELKHGRVAMLAVTGILVQSF-VRFPGFPPFPVSNPARPLAVLKGLLSTEGNNVVLFLLGIGVVELTIGKQDYVDRAPGELGEFGAFAKPVDKEEWDKVQMAELKHGRLAMLGVVGCLVQELVTGEGPVEQLLNGNIFPFA 706
            +MS+ EMIGADVE+GG+FDPL FS+DE SLFRRRAVELKHGR+AMLA  G  VQS  V  P     PV +  RPL+ L  +L+         +  I  +EL  G+QDY ++APG+LG FG   K  D EE+ K Q+ ELK+GRLAM+G++G +VQE +TG+   EQ+ +GNI PF+
Sbjct:   43 KMSVEEMIGADVETGGVFDPLKFSEDEASLFRRRAVELKHGRIAMLACLGYFVQSAGVHLPD----PVFSEPRPLSALTKVLTERPWAAAQIVAAIAAIELGPGRQDYENKAPGDLGYFGDSFKNSDPEEFRKDQLRELKNGRLAMIGIMGMMVQEGLTGQSVWEQIGSGNINPFS 214
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BLAST of mRNA_E-siliculosus-1a_F_contig1543.3144.1 vs. uniprot
Match: D5KBP8_ELYCH (Light harvesting complex protein 3 (Fragment) n=4 Tax=Eukaryota TaxID=2759 RepID=D5KBP8_ELYCH)

HSP 1 Score: 160 bits (406), Expect = 1.880e-46
Identity = 80/148 (54.05%), Postives = 105/148 (70.95%), Query Frame = 2 
Query:  233 FDPLGFSKDEPSLFRRRAVELKHGRVAMLAVTGILVQSFVRFPGFPPFPVSNPARPLAVLKGLLSTEGNNVVLFLLGIGVVELTIGKQDYVDRAPGELGEFGAFAKPVDKEEWDKVQMAELKHGRLAMLGVVGCLVQELVTGEGPVEQ 676
            +DPLGFSKDE SLFRRR VELKHGR+ MLA  G+ VQ+ +  P     PV +  RP+  L  + +     +   +L IG +EL+IGKQDY ++APG+LG FG FAKP D  EW+KVQ+ ELK+GRLAM+ ++G LVQE +T +GP+EQ
Sbjct:    1 WDPLGFSKDEASLFRRRVVELKHGRICMLATLGVFVQNSIHLPD----PVFSNPRPIGALLQVFAERPIAIWQIILAIGAIELSIGKQDYENKAPGDLGSFGDFAKPSDPIEWEKVQLRELKNGRLAMMAIMGMLVQEGLTKQGPLEQ 144
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BLAST of mRNA_E-siliculosus-1a_F_contig1543.3144.1 vs. uniprot
Match: A0A835Z571_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z571_9STRA)

HSP 1 Score: 162 bits (409), Expect = 4.850e-46
Identity = 88/175 (50.29%), Postives = 122/175 (69.71%), Query Frame = 2 
Query:  179 IEMSIREMIGADVESGGLFDPLGFSKDEPSLFRRRAVELKHGRVAMLAVTGILVQSFVRFPGFPPFPVSNPARPLAVLKGLLSTEGNNVVLFLLGIGVVELTIGKQDYVDRAPGELGEFGAFAKPVDKEEWDKVQMAELKHGRLAMLGVVGCLVQELVTGEGPVEQLLNGNIFPF 703
            + MS+ E+IGAD E+GG++DP GF+KD+ +L++ R VELKHGRVAMLA  G+LVQSFV  P  P F  ++ ARP      L S+    +    L  G VEL + KQD  ++APG+LG FGA+  P  +EE + +Q+ ELK+GRLAM+ +VG  VQE +TG+GP+EQ+L G++ PF
Sbjct:   38 LRMSVEELIGADTETGGVWDPAGFAKDDAALYKYREVELKHGRVAMLATLGVLVQSFVTLPD-PVF--ADGARPQTAAFELASSRPEALAQIFLACGAVELLVLKQD-PEKAPGDLG-FGAY--PDTEEELEVLQLKELKNGRLAMMAIVGMFVQEKLTGQGPIEQILAGHVSPF 205
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1543.3144.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JT49_9PHAE2.200e-16096.58LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A835ZIK7_9STRA1.300e-5651.10Chlorophyll a/b-binding protein domain-containing ... [more]
A0A835ZAI4_9STRA4.420e-5655.37Light harvesting complex protein n=1 Tax=Tribonema... [more]
W7U405_9STRA1.090e-5151.89Light-harvesting protein n=2 Tax=Monodopsidaceae T... [more]
W7TRI0_9STRA2.690e-5054.34Light-harvesting protein n=1 Tax=Nannochloropsis g... [more]
A0A6H5KVZ6_9PHAE2.630e-4954.24LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D8LBT8_ECTSI2.790e-4954.60Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
A0A0G4GDB0_VITBC7.140e-4952.84Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
D5KBP8_ELYCH1.880e-4654.05Light harvesting complex protein 3 (Fragment) n=4 ... [more]
A0A835Z571_9STRA4.850e-4650.29Light harvesting complex protein n=1 Tax=Tribonema... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1543contigE-siliculosus-1a_F_contig1543:10287..13952 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size705
Model size758
Exons5
Ec32 orthologEc-00_005570.1
Ec32 ortholog descriptionLight harvesting complex protein (probable pseudogene)
Hectar predicted targeting categorysignal peptide
BRITEko00000,ko00001,ko00194
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.U
EggNOG OGs2CDPH@1,2S44M@2759
EggNOG free text desc.Chlorophyll A-B binding protein
KEGG Pathwayko00196,map00196
KEGG koko:K08907
Seed eggNOG ortholog2880.D7FPU8
Seed ortholog evalue4.4e-36
Seed ortholog score158.3
Taxonomic scopeEukaryota
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928051.9239507-UTR-E-siliculosus-1a_F_contig1543:10286..102901622928051.9239507-UTR-E-siliculosus-1a_F_contig1543:10286..10290Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1543 10287..10290 +
1696318788.4473457-UTR-E-siliculosus-1a_F_contig1543:10286..102901696318788.4473457-UTR-E-siliculosus-1a_F_contig1543:10286..10290Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1543 10287..10290 +
1622928052.0488153-UTR-E-siliculosus-1a_F_contig1543:13903..139521622928052.0488153-UTR-E-siliculosus-1a_F_contig1543:13903..13952Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1543 13904..13952 +
1696318788.500805-UTR-E-siliculosus-1a_F_contig1543:13903..139521696318788.500805-UTR-E-siliculosus-1a_F_contig1543:13903..13952Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1543 13904..13952 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928051.9434574-CDS-E-siliculosus-1a_F_contig1543:10290..105311622928051.9434574-CDS-E-siliculosus-1a_F_contig1543:10290..10531Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1543 10291..10531 +
1696318788.4566846-CDS-E-siliculosus-1a_F_contig1543:10290..105311696318788.4566846-CDS-E-siliculosus-1a_F_contig1543:10290..10531Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1543 10291..10531 +
1622928051.968182-CDS-E-siliculosus-1a_F_contig1543:11244..113061622928051.968182-CDS-E-siliculosus-1a_F_contig1543:11244..11306Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1543 11245..11306 +
1696318788.464018-CDS-E-siliculosus-1a_F_contig1543:11244..113061696318788.464018-CDS-E-siliculosus-1a_F_contig1543:11244..11306Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1543 11245..11306 +
1622928051.9834185-CDS-E-siliculosus-1a_F_contig1543:12554..127431622928051.9834185-CDS-E-siliculosus-1a_F_contig1543:12554..12743Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1543 12555..12743 +
1696318788.4743717-CDS-E-siliculosus-1a_F_contig1543:12554..127431696318788.4743717-CDS-E-siliculosus-1a_F_contig1543:12554..12743Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1543 12555..12743 +
1622928052.001106-CDS-E-siliculosus-1a_F_contig1543:13309..135041622928052.001106-CDS-E-siliculosus-1a_F_contig1543:13309..13504Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1543 13310..13504 +
1696318788.4828317-CDS-E-siliculosus-1a_F_contig1543:13309..135041696318788.4828317-CDS-E-siliculosus-1a_F_contig1543:13309..13504Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1543 13310..13504 +
1622928052.0366414-CDS-E-siliculosus-1a_F_contig1543:13885..139031622928052.0366414-CDS-E-siliculosus-1a_F_contig1543:13885..13903Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1543 13886..13903 +
1696318788.4913285-CDS-E-siliculosus-1a_F_contig1543:13885..139031696318788.4913285-CDS-E-siliculosus-1a_F_contig1543:13885..13903Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1543 13886..13903 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1543.3144.1prot_E-siliculosus-1a_F_contig1543.3144.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1543 10291..13903 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1543.3144.1

>prot_E-siliculosus-1a_F_contig1543.3144.1 ID=prot_E-siliculosus-1a_F_contig1543.3144.1|Name=mRNA_E-siliculosus-1a_F_contig1543.3144.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=235bp
MGREITLMILGLIAGCGGFAVPPTARRLRPNAARGCWRTPPRNGCHPSTS
SRSSSAARIEMSIREMIGADVESGGLFDPLGFSKDEPSLFRRRAVELKHG
RVAMLAVTGILVQSFVRFPGFPPFPVSNPARPLAVLKGLLSTEGNNVVLF
LLGIGVVELTIGKQDYVDRAPGELGEFGAFAKPVDKEEWDKVQMAELKHG
RLAMLGVVGCLVQELVTGEGPVEQLLNGNIFPFA*
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mRNA from alignment at E-siliculosus-1a_F_contig1543:10287..13952+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1543.3144.1 ID=mRNA_E-siliculosus-1a_F_contig1543.3144.1|Name=mRNA_E-siliculosus-1a_F_contig1543.3144.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3666bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1543:10287..13952+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CACCATGGGTCGAGAGATAACGCTCATGATCCTTGGCCTCATTGCAGGCT
GTGGAGGCTTTGCCGTACCGCCCACCGCGCGAAGATTGAGACCAAACGCT
GCGAGAGGCTGCTGGAGGACGCCCCCACGAAATGGCTGCCATCCCTCAAC
AAGCAGCAGATCGTCTTCTGCAGCCAGGATCGAAATGTCCATAAGGGAAA
TGATCGGCGCTGACGTCGAGAGCGGGGGCCTGTTTGATCCGTTAGGTGAG
AAAAAGGGTGGACTGACTGCTGTGTTACAAAAATAAAGCATCTCAGGCTT
GTACAAGGTGTTTTTAGCGGTTGGGAGCGTATGCATAGCATACGTGGATC
CATTCAAATTTTCAAATGTGAGGGCAGGAGGCGACAACTAGAGGGACATT
CTGCCGGCACATGTGCCCTTGAGTCGACACTGCTGTTGCCCTTGGGAGGT
GCCTGAGCCCAAGTCCCGTGCGGCTTACAACATGCCACAACCATCGTAGT
GGTGATCATACTTGTGTGGCAAAGCCCTTCTCCAAAAGTGCAGCCTTCAC
AATGTACCGCACTATGTGCGGGAGAACGGAACAGGGATGTACAGCGTAGG
TGCCGTACACACATGGGTTTGTTGACATGCTCTGGATGCCGGACAAGACT
GTAGCAAAACAGCAGAAGTCATCCTGCCGCTCAACAGCTTTCCACCTGCT
CCCCCCCCCCGACAAGAGTCTGTCCCTCCCGCCCCTTCTCTGCCCCCCCC
TCCCCCCCCCCCTCCCAACAAGAGTCCGTCTTCCCCCCCCTTGGCCCCCG
TCAATGCATGGAATCCGTTCGCCCCACACACTGAGCAAGTACTTGGTCCA
AAGCGAATGTTACGTGCGTTCGTCTCTGCGCCAATGTACTACATAGCATG
GAGCACCCCAACAACGCCTCCACGTCTGCCCGCGGTGCACCTGGTATATT
GTTCGCAGGATTTTCAAAAGACGAACCCTCGCTGTTCCGAAGGCGGGCCG
TCGAGCTCAAGCACGGAAGGGTAAGATGAACAAGGGAATTTGGGGGGGTG
GGGGGGGCGTATTCGTATGTGTTGCATGCCTTAGCGGTTAGACCATTGAC
CAAGCGTCCTCGAAAGGATGGAGCATTATTCCCACAGGACCGATCACCGA
TGGCCAACCGTTCCTTCCTACTTTGCCAAAGGTGGCTGGAAAATGTCTTC
CCTAGTCTATCCTAACGATATTACTTCCCGCCGTTTCAAACCACTTCCTA
TTCCCCAGTACAGCTACCGTCTTCTCCTCTCTATTCCATGCCTCAACATC
TCCCTGTACCTCCCTTGTATTTTTCCCAGCTCAGTCATTTACACTTGTCT
TTCCTTGTACAATGGACATTCCGTTTTTACATGGGGTCTTCGCACTAGGA
GCCGCAATCACGTTTGAACTTGTCGTCTTCATCGTCTACCTAAGTCTTCG
TCTACGTTCTCGAAGACCAATGTCCCCGGTCCTAAATTTGACCTTCAGCT
TTGTCCCTGCATCCTTTTGTCCATGTAAGTACTCCCTCTTCATTCTTTCA
ACATTCCCTACACATCTAGACCCTCCTTATCCTTGGTTTCTTTTGTTCGG
TTCTGTTCTTCTCTCTCGGTACAAAGAACAGATATCTTCTCCTTGAACCT
CTCTATACCTTCTGTTTCCAGGAACTTTTTGGGGGGGGCGGTGTAGAGCA
GTCGTCACCCGAGATCCTGTCTTGTTCATGCCTCTGAGCATTCATTGTGA
TACCACAACCTTGTGCAATAATTAAGAAAGGATTTGCAGATAATAAAATC
CTGTGCCCGGTCCCCGGTCTGAAGTTTGTGGCTGTCTGTAACTGTTGTGT
CTATTGTCAAATCTTATCCTCAGGGGATACGGAAGGGAGAAACCATAAGA
TAGGACAACAGAAAGAGTGAAGAGAAAGAGAGGGCGATGGACGGGATCTG
CTTCTTCCCCTCAAATACATTCGTAGTTCGCTTGTTTAACCCGCCACGTC
TGGTAAGTACTTCACTTACTTGTGGAAGCCCCCACAGTCGAGCCCCTGCC
GACCCATCTCTGCACTCACTCCCGTGTTTGACCTGGAAACAATGTAACAT
GCTTTCGTTTGGAAACACGGAAGTAGTTGTCCGCCCCCTCCTGCCTGCCC
GCCTGCAGCTAAATCAGCGCTTCACTGGTGTTTCGCGGAAACGTGGTCAC
AAGCAAGCTTCCACGCAACAAACACCGGTGCCGACCGCAACCCCTCCTTG
ATTTCGTCTTACCGGCAGGTGGCGATGCTCGCCGTCACCGGTATCTTGGT
GCAGTCCTTCGTGCGCTTCCCGGGTTTCCCGCCGTTTCCCGTCTCTAATC
CAGCGCGCCCGCTGGCGGTGCTGAAGGGACTCTTGTCGACCGAGGGAAAC
AACGTGGTGCTGTTTCTGTTGGGCATTGGGGTGGTGGAACTCACGATAGG
GAAGCAGGTGTGTGGTCTACCCGCGCGTTATTCTCTCTGGCACTGCAGCA
AAAGGTGCAAAGCGCAGTAGTTCGTGTCATGGCGGCACATACTCAGCAGT
TCAGCAACAGCAGTGTCGTCGGTCTTGTGTTTTCGAAGTTTCTAGCTTGG
TATACGAGAACACGCCTTGCAAAGAACTGGTACCAATTTATCTTTGGGTG
TGTCCGTCCATTTCCTACGGAACAGCAATTGGTCGAAAAAAAAGACAGGA
CTCTTGCTTGTTGTGTACGTTCTGGCTTCCCGACCTTGTGGGCTTATTTC
AAACCGAAAGGTCGAACCTATTTTAGTGGCATACGTTGTCTTTTTGTGGC
CACTGCAGCCACCTCGTAAGGAAGGGATACCTTGAACAAGCCATGGGCGT
ATTCGACGCCCCGGCGGGGCCATGCCCACCTAACACCATAACGGCACACC
GCGGTCGGTAAAGCGATGCCTCTCGTCGAGGTTCGGGATCCCTTCCCCTG
GCTGGCCTGTTTCTTGCGATGCCGGAACCCCACTTTTTTTTATCCTTGTC
GCCGCCGCCGCCGTCGACACCAGGACTACGTAGACAGAGCTCCGGGAGAG
CTCGGCGAGTTTGGAGCGTTCGCGAAGCCGGTGGACAAGGAGGAGTGGGA
TAAGGTTCAGATGGCCGAGCTGAAGCACGGACGCCTGGCAATGCTGGGTG
TGGTGGGGTGCTTGGTGCAGGAGCTCGTGACGGGGGAGGGACCCGTCGAG
CAGCTTCTCAACGGGAACGTAAGAGGGAGAACGACAGAGATGAAAAAAGG
AAGATGAGCAGGGGAGGGAGGACAGAGTCAAAGAAGTGATGCTTTGTGTG
CTACTTTTTCAGCTGTCAAAAAGTTGTGGTGCATCGCGAATTGCGCTGCC
GTGCACGGCGCAATCCATGTTTGACTGGATTCTTAGTGCTTGTGTGACGC
CCTCTTGCGAAATCGAATCGAAACCCCAAATGGCACCGAAACCTCTCGTT
CTCTGTATGTACCCCTCCCGCCACGCATATGCGCCCATGCTGTACCAAGC
GTATCCGGACTCATCGGACCCTCCTTCCGCTGACCGATCTCTCGTGCCCT
ATTGGGTTTGCCCACATTGCTCAATCTGCATCATCATTCCCATCAACAGA
TATTTCCATTCGCTTAGAGGGAGGAACCCCTGGTGGCAAGGAAGTGGATG
GACTGTTTCCGGGGTG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1543:10287..13952+

>mRNA_E-siliculosus-1a_F_contig1543.3144.1 ID=mRNA_E-siliculosus-1a_F_contig1543.3144.1|Name=mRNA_E-siliculosus-1a_F_contig1543.3144.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1410bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1543:10287..13952+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGGTCGAGAGATAACGCTCATGATCCTTGGCCTCATTGCAGGCTGTGG
AGGCTTTGCCGTACCGCCCACCGCGCGAAGATTGAGACCAAACGCTGCGA
GAGGCTGCTGGAGGACGCCCCCACGAAATGGCTGCCATCCCTCAACAAGC
AGCAGATCGTCTTCTGCAGCCAGGATCGAAATGTCCATAAGGGAAATGAT
CGGCGCTGACGTCGAGAGCGGGGGCCTGTTTGATCCGTTAGATGGGTCGA
GAGATAACGCTCATGATCCTTGGCCTCATTGCAGGCTGTGGAGGCTTTGC
CGTACCGCCCACCGCGCGAAGATTGAGACCAAACGCTGCGAGAGGCTGCT
GGAGGACGCCCCCACGAAATGGCTGCCATCCCTCAACAAGCAGCAGATCG
TCTTCTGCAGCCAGGATCGAAATGTCCATAAGGGAAATGATCGGCGCTGA
CGTCGAGAGCGGGGGCCTGTTTGATCCGTTAGGATTTTCAAAAGACGAAC
CCTCGCTGTTCCGAAGGCGGGCCGTCGAGCTCAAGCACGGAAGGGATTTT
CAAAAGACGAACCCTCGCTGTTCCGAAGGCGGGCCGTCGAGCTCAAGCAC
GGAAGGGTGGCGATGCTCGCCGTCACCGGTATCTTGGTGCAGTCCTTCGT
GCGCTTCCCGGGTTTCCCGCCGTTTCCCGTCTCTAATCCAGCGCGCCCGC
TGGCGGTGCTGAAGGGACTCTTGTCGACCGAGGGAAACAACGTGGTGCTG
TTTCTGTTGGGCATTGGGGTGGTGGAACTCACGATAGGGAAGCAGGTGGC
GATGCTCGCCGTCACCGGTATCTTGGTGCAGTCCTTCGTGCGCTTCCCGG
GTTTCCCGCCGTTTCCCGTCTCTAATCCAGCGCGCCCGCTGGCGGTGCTG
AAGGGACTCTTGTCGACCGAGGGAAACAACGTGGTGCTGTTTCTGTTGGG
CATTGGGGTGGTGGAACTCACGATAGGGAAGCAGGACTACGTAGACAGAG
CTCCGGGAGAGCTCGGCGAGTTTGGAGCGTTCGCGAAGCCGGTGGACAAG
GAGGAGTGGGATAAGGTTCAGATGGCCGAGCTGAAGCACGGACGCCTGGC
AATGCTGGGTGTGGTGGGGTGCTTGGTGCAGGAGCTCGTGACGGGGGAGG
GACCCGTCGAGCAGCTTCTCAACGGGAACGACTACGTAGACAGAGCTCCG
GGAGAGCTCGGCGAGTTTGGAGCGTTCGCGAAGCCGGTGGACAAGGAGGA
GTGGGATAAGGTTCAGATGGCCGAGCTGAAGCACGGACGCCTGGCAATGC
TGGGTGTGGTGGGGTGCTTGGTGCAGGAGCTCGTGACGGGGGAGGGACCC
GTCGAGCAGCTTCTCAACGGGAACATATTTCCATTCGCTTAGATATTTCC
ATTCGCTTAG
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