prot_E-siliculosus-1a_F_contig153.3071.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_E-siliculosus-1a_F_contig153.3071.1
Unique Name	prot_E-siliculosus-1a_F_contig153.3071.1
Type	polypeptide
Organism	Ectocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length	232

Homology

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BLAST of mRNA_E-siliculosus-1a_F_contig153.3071.1 vs. uniprot
Match: D7FQG7_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQG7_ECTSI)

HSP 1 Score: 446 bits (1148), Expect = 2.420e-158
Identity = 230/231 (99.57%), Postives = 230/231 (99.57%), Query Frame = 0

Query:    1 MVTSQLFLGTAATLIASSAAFVAPIAAPRSSTARVAASSTPKMTAGSDYAASLPGAPFGMAAEGKYFDPAGLATNQDPETIKKWREAELKHGRVSMLAAVGILVSEVFHPLFMGPAYIGPAVEHAQQIATVYPLFWVASLGMIAFIEGQTIKDAWGTVSPVTGVGNLKTEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQEVVDGKGILEHIVSRI 231
            MVTSQLFLGTAATLIASSAAFVAPIAAPRSS ARVAASSTPKMTAGSDYAASLPGAPFGMAAEGKYFDPAGLATNQDPETIKKWREAELKHGRVSMLAAVGILVSEVFHPLFMGPAYIGPAVEHAQQIATVYPLFWVASLGMIAFIEGQTIKDAWGTVSPVTGVGNLKTEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQEVVDGKGILEHIVSRI
Sbjct:    1 MVTSQLFLGTAATLIASSAAFVAPIAAPRSSIARVAASSTPKMTAGSDYAASLPGAPFGMAAEGKYFDPAGLATNQDPETIKKWREAELKHGRVSMLAAVGILVSEVFHPLFMGPAYIGPAVEHAQQIATVYPLFWVASLGMIAFIEGQTIKDAWGTVSPVTGVGNLKTEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQEVVDGKGILEHIVSRI 231

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BLAST of mRNA_E-siliculosus-1a_F_contig153.3071.1 vs. uniprot
Match: D7G7Q6_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q6_ECTSI)

HSP 1 Score: 248 bits (632), Expect = 5.840e-80
Identity = 134/224 (59.82%), Postives = 168/224 (75.00%), Query Frame = 0

Query:    1 MVTSQLFLGTAATLIASSAAFVAPIAAPRSSTARVAASSTPKMTAGSDYAASLPGAPFGMAAEGKYFDPAGLATNQDPETIKKWREAELKHGRVSMLAAVGILVSEVFHPLFMGPAYIGPAVEHAQQIATVYPLFWVASLGMIAFIEGQTIKDAWGTVSPVTGVGNLKTEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQEVVDGKGIL 224
            MV +QLFLG+AATLIASS AFVAP+A    S A  ++SS  KM+AGSDY A+LPGAPFG   +GK FDP  L+   DP  IKKWREAE+KHGRV+MLA++G+LV+E +HPLFMGP YIGPAV+H Q+I+  YP FWV SL  +AFIE  TI  A+ T S VTG G LK +Y PGDLGFDPL L P+D     +++++EL+ GR AMIG+ GM+VQE+++   IL
Sbjct:    1 MVATQLFLGSAATLIASSTAFVAPMAV--RSAAPASSSSALKMSAGSDYVATLPGAPFG---DGKIFDPLNLSDGADPADIKKWREAEIKHGRVAMLASLGVLVAEQYHPLFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKEDYVPGDLGFDPLNLKPEDEAALDVMKTKELNNGRLAMIGIAGMLVQELINPADIL 219

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BLAST of mRNA_E-siliculosus-1a_F_contig153.3071.1 vs. uniprot
Match: D7G7S1_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S1_ECTSI)

HSP 1 Score: 240 bits (613), Expect = 4.620e-77
Identity = 130/221 (58.82%), Postives = 161/221 (72.85%), Query Frame = 0

Query:    4 SQLFLGTAATLIASSAAFVAPIAAPRSSTARVAASSTPKMTAGSDYAASLPGAPFGMAAEGKYFDPAGLATNQDPETIKKWREAELKHGRVSMLAAVGILVSEVFHPLFMGPAYIGPAVEHAQQIATVYPLFWVASLGMIAFIEGQTIKDAWGTVSPVTGVGNLKTEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQEVVDGKGIL 224
            S +FLGTAATLIASS AFVAP+A    S A  +++S  KM+AGSDY A+LPGAPFG   +GK FDP  L+   +P  IK WREAE+KHGRV+MLA VG++V+E +HPLFMGP YIGPAV+H Q+I+  +P FW  SL  +AFIE  TI  A+   SPVTG G L+ EY PGDLGFDPL L PKD      +Q++EL+ GR AMIG+ GM+VQE+V+   IL
Sbjct:    5 SNMFLGTAATLIASSTAFVAPMAV--RSAAPASSASALKMSAGSDYVATLPGAPFG---DGKIFDPLELSDGAEPGEIKLWREAEIKHGRVAMLATVGVIVAEQYHPLFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTITKAYAEPSPVTGEGGLRDEYSPGDLGFDPLNLKPKDQAGLEKMQTKELNNGRLAMIGIAGMLVQELVNPADIL 220

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BLAST of mRNA_E-siliculosus-1a_F_contig153.3071.1 vs. uniprot
Match: D7G7Q9_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q9_ECTSI)

HSP 1 Score: 234 bits (597), Expect = 1.360e-74
Identity = 128/226 (56.64%), Postives = 163/226 (72.12%), Query Frame = 0

Query:    1 MVTSQLFLGTAATLIASSAAFVAPIAAPRSSTARVAASSTPKMTAGSDYAASLPGAPFGMAAEGKYFDPAGLATNQDPETIKKWREAELKHGRVSMLAAVGILVSEVFHPLFMGPAYIGPAVEHAQQIATVYPLFWVASLGMIAFIEGQTIKDAWGTVSPVTGVGNLKTEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQEVVDGKGILEH 226
            MV SQ+FLGTAA LIASS AFVAP+A    S A  +A+S  KM+AGSDY A+LPGAPF   ++GK FDP  L+    P  IKKWREAE+KHGRV+MLA++GILV+E +HPLFMG  +IGPA+ H Q+I+  +P FW  SL  +AFIE  TI  A+ T S VTG G LK +Y PGDLGFDPL L P       +++++EL+ GR AMIG+ GM+ QE+V+G+ IL +
Sbjct:    1 MVASQMFLGTAAALIASSTAFVAPVAV--RSAAPASAASALKMSAGSDYVATLPGAPF---SDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDGEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDILPN 221

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BLAST of mRNA_E-siliculosus-1a_F_contig153.3071.1 vs. uniprot
Match: D7G7S0_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S0_ECTSI)

HSP 1 Score: 231 bits (588), Expect = 2.600e-73
Identity = 126/221 (57.01%), Postives = 157/221 (71.04%), Query Frame = 0

Query:    4 SQLFLGTAATLIASSAAFVAPIAAPRSSTARVAASSTPKMTAGSDYAASLPGAPFGMAAEGKYFDPAGLATNQDPETIKKWREAELKHGRVSMLAAVGILVSEVFHPLFMGPAYIGPAVEHAQQIATVYPLFWVASLGMIAFIEGQTIKDAWGTVSPVTGVGNLKTEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQEVVDGKGIL 224
            S +FLGTAATLIASSAAFV P+A    S A  +++S  KM+AG+DY A+LPG      A GK FD   LA   DP  IK WREAE+KHGRV+MLA VG++V+E +HP FMGP YIGPAV+H Q+I   +P FW  SL  +AFIE  TIK A+   SPVTG G L+ EY PGDLGFDP  + PKD      +Q++EL+ GR AMIG++GM+VQE+V+G+ IL
Sbjct:    5 SNMFLGTAATLIASSAAFVTPMAV--RSAAPASSASALKMSAGTDYLATLPG------ANGKIFDLLELADGADPGEIKLWREAEIKHGRVAMLATVGVVVAEQYHPFFMGPDYIGPAVDHFQEITAKFPQFWAYSLLGMAFIEYNTIKKAYAEPSPVTGEGGLRDEYSPGDLGFDPAKIKPKDQAGLEKMQNKELNNGRLAMIGIVGMLVQELVNGQDIL 217

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BLAST of mRNA_E-siliculosus-1a_F_contig153.3071.1 vs. uniprot
Match: D7G5B4_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5B4_ECTSI)

HSP 1 Score: 217 bits (552), Expect = 3.960e-67
Identity = 115/219 (52.51%), Postives = 158/219 (72.15%), Query Frame = 0

Query:    1 MVTSQ-LFLGTAATLIASSAAFVAPIAAPRSSTARVAASSTPKMTAGSDYAASLPGAPFGMAAEGKYFDPAGLATNQDPETIKKWREAELKHGRVSMLAAVGILVSEVFHPLFMGPAYIGPAVEHAQQIATVYPLFWVASLGMIAFIEGQTIKDAWGTVSPVTGVGNLKTEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQEVV 218
            MVTS    +G A+   AS  AF+ P   P + +AR   S+  +M+AGSDY ++LPGAPF   A+GK +DP GL++  DPE IKKWREAE+KHGRV+MLA+VG+LV+E FHPLF+GP YIGPA+ H ++I   +P FW  +L  IA++E + I   +  + PVTG G ++ +Y PGDLGFDPLGLAP+D  +  +++++EL+ GR AMIG+ GMIVQE+V
Sbjct:   52 MVTSTGALVGMASWCFASCEAFIVPT--PTTLSARP-TSTAARMSAGSDYVSTLPGAPF---ADGKVWDPVGLSSEADPEDIKKWREAEIKHGRVAMLASVGVLVAENFHPLFLGPDYIGPAIFHFEEITARFPQFWALTLLAIAWLEYRQINIGFAELDPVTGEGGMRLDYVPGDLGFDPLGLAPEDEHELNVMKTKELNHGRLAMIGITGMIVQELV 264

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BLAST of mRNA_E-siliculosus-1a_F_contig153.3071.1 vs. uniprot
Match: D7G7S5_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S5_ECTSI)

HSP 1 Score: 183 bits (465), Expect = 5.490e-55
Identity = 87/158 (55.06%), Postives = 114/158 (72.15%), Query Frame = 0

Query:   67 FDPAGLATNQDPETIKKWREAELKHGRVSMLAAVGILVSEVFHPLFMGPAYIGPAVEHAQQIATVYPLFWVASLGMIAFIEGQTIKDAWGTVSPVTGVGNLKTEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQEVVDGKGIL 224
            FDP GL+    P  IKKWREAE+KHGRV+MLA++G++V+E +HP FMGP YIGPAV+H Q+I+  +P FW  SL  +AF+E  TI  A+ T S VTG G LK +Y PGDLGFDPL L P D     +++++EL+ GR AMIG+ GM+ QE+V+   IL
Sbjct:   38 FDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFVEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADIL 195

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BLAST of mRNA_E-siliculosus-1a_F_contig153.3071.1 vs. uniprot
Match: A0A6H5K8D0_9PHAE (LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K8D0_9PHAE)

HSP 1 Score: 182 bits (461), Expect = 1.950e-54
Identity = 111/224 (49.55%), Postives = 140/224 (62.50%), Query Frame = 0

Query:    1 MVTSQLFLGTAATLIASSAAFVAPIAAPRSSTARVAASSTPKMTAGSDYAASLPGAPFGMAAEGKYFDPAGLATNQDPETIKKWREAELKHGRVSMLAAVGILVSEVFHPLFMGPAYIGPAVEHAQQIATVYPLFWVASLGMIAFIEGQTIKDAWGTVSPVTGVGNLKTEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQEVVDGKGIL 224
            MV SQ+F+GTAATLIASS AFVAP+A    S     +S   KM+AGSDY A+LPGAPF   ++GK FDP GL+    P  IKKWREAE+KHGRV+MLA++G++V+E                            FW  SL  +AFIE  TI  A+ T S VTG G LK +Y PGDLGFDPL L P D     +++++EL+ GR AMIG+ GM+ QE+V+   IL
Sbjct:    1 MVASQMFIGTAATLIASSTAFVAPMAV--RSVTTTPSSPGLKMSAGSDYVATLPGAPF---SDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAE----------------------------FWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADIL 191

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BLAST of mRNA_E-siliculosus-1a_F_contig153.3071.1 vs. uniprot
Match: D7G7Q7_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Q7_ECTSI)

HSP 1 Score: 181 bits (458), Expect = 3.570e-54
Identity = 88/163 (53.99%), Postives = 113/163 (69.33%), Query Frame = 0

Query:   65 KYFDPAGLATNQDPETIKKWREAELKHGRVSMLAAVGILVSEVFHPLFMGPAYIGPAVEHAQQIATVYPLFWVASLGMIAFIEGQTIKDAWGTVSPVTGVGNLKTEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQEVVDGKGILEHI 227
            K FDP GLA   +   IK WREAE+KHGRV+MLA++G+LV+E +HP FMGP YIGPAV+H Q+I+  +P FW  SL  +A IE  TI  A+   S VTG G L+ EY PGDLGFDPL L P D      +Q++EL+ GR AMIG+ G +VQE+V+   IL+ +
Sbjct:   15 KIFDPLGLADGAEVGDIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISARFPEFWAFSLLALALIEYNTITKAYAEPSFVTGEGGLRDEYSPGDLGFDPLNLKPTDQTALETMQTKELNNGRLAMIGIAGTLVQELVNPTNILDFL 177

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BLAST of mRNA_E-siliculosus-1a_F_contig153.3071.1 vs. uniprot
Match: A0A6H5JWB4_9PHAE (LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWB4_9PHAE)

HSP 1 Score: 184 bits (466), Expect = 9.270e-53
Identity = 88/158 (55.70%), Postives = 114/158 (72.15%), Query Frame = 0

Query:   67 FDPAGLATNQDPETIKKWREAELKHGRVSMLAAVGILVSEVFHPLFMGPAYIGPAVEHAQQIATVYPLFWVASLGMIAFIEGQTIKDAWGTVSPVTGVGNLKTEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQEVVDGKGIL 224
            FDP GL+    P  IKKWREAE+KHGRV+MLA++G++V+E +HP FMGP YIGPAV+H Q+I+  +P FW  SL  +AFIE  TI  A+ T S VTG G LK +Y PGDLGFDPL L P D     +++++EL+ GR AMIG+ GM+ QE+V+   IL
Sbjct:  234 FDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADIL 391

The following BLAST results are available for this feature:

BLAST of mRNA_E-siliculosus-1a_F_contig153.3071.1 vs. uniprot

BLAST of mRNA_E-siliculosus-1a_F_contig153.3071.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FQG7_ECTSI	2.420e-158	99.57	Light harvesting complex protein n=2 Tax=Ectocarpu...	[more]
D7G7Q6_ECTSI	5.840e-80	59.82	Light harvesting complex protein n=2 Tax=Ectocarpu...	[more]
D7G7S1_ECTSI	4.620e-77	58.82	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
D7G7Q9_ECTSI	1.360e-74	56.64	Light harvesting complex protein n=2 Tax=Ectocarpu...	[more]
D7G7S0_ECTSI	2.600e-73	57.01	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
D7G5B4_ECTSI	3.960e-67	52.51	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
D7G7S5_ECTSI	5.490e-55	55.06	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
A0A6H5K8D0_9PHAE	1.950e-54	49.55	LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A...	[more]
D7G7Q7_ECTSI	3.570e-54	53.99	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
A0A6H5JWB4_9PHAE	9.270e-53	55.70	LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 229..231
None	No IPR available	PANTHER	PTHR21649:SF63		coord: 10..220
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 18..22
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 23..231
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..22
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..5
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 6..17
None	No IPR available	SIGNALP_EUK	SignalP-noTM	SignalP-noTM	coord: 1..20 score: 0.577
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 39..228
None	No IPR available	TMHMM	TMhelix		coord: 128..146
None	No IPR available	TMHMM	TMhelix		coord: 91..113
None	No IPR available	TMHMM	TMhelix		coord: 5..27
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10		coord: 53..231 e-value: 4.6E-38 score: 133.1
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 59..216 e-value: 1.3E-35 score: 123.3
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 10..220

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E-siliculosus-1a_F_contig153	contig	E-siliculosus-1a_F_contig153:36678..39705 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female	2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90	2022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_E-siliculosus-1a_F_contig153.3071.1	mRNA_E-siliculosus-1a_F_contig153.3071.1	Ectocarpus siliculosus Ec863f_EcPH12_90f female	mRNA	E-siliculosus-1a_F_contig153 36607..39705 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_E-siliculosus-1a_F_contig153.3071.1 ID=prot_E-siliculosus-1a_F_contig153.3071.1|Name=mRNA_E-siliculosus-1a_F_contig153.3071.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=232bp
MVTSQLFLGTAATLIASSAAFVAPIAAPRSSTARVAASSTPKMTAGSDYA
ASLPGAPFGMAAEGKYFDPAGLATNQDPETIKKWREAELKHGRVSMLAAV
GILVSEVFHPLFMGPAYIGPAVEHAQQIATVYPLFWVASLGMIAFIEGQT
IKDAWGTVSPVTGVGNLKTEYYPGDLGFDPLGLAPKDGEDFRLIQSQELD
LGRYAMIGVLGMIVQEVVDGKGILEHIVSRI*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001344	Chloro_AB-bd_pln
IPR022796	Chloroa_b-bind
IPR023329	Chlorophyll_a/b-bd_dom_sf