mRNA_E-siliculosus-1a_F_contig153.3071.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig153.3071.1 vs. uniprot
Match: D7FQG7_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQG7_ECTSI) HSP 1 Score: 445 bits (1145), Expect = 1.750e-157 Identity = 230/231 (99.57%), Postives = 230/231 (99.57%), Query Frame = 1
Query: 1 MVTSQLFLGTAATLIASSAAFVAPIAAPRSSTARVAASSTPKMTAGSDYAASLPGAPFGMAAEGKYFDPAGLATNQDPETIKKWREAELKHGRVSMLAAVGILVSEVFHPLFMGPAYIGPAVEHAQQIATVYPLFWVASLGMIAFIEGQTIKDAWGTVSPVTGVGNLKTEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQEVVDGKGILEHIVSRI 693
MVTSQLFLGTAATLIASSAAFVAPIAAPRSS ARVAASSTPKMTAGSDYAASLPGAPFGMAAEGKYFDPAGLATNQDPETIKKWREAELKHGRVSMLAAVGILVSEVFHPLFMGPAYIGPAVEHAQQIATVYPLFWVASLGMIAFIEGQTIKDAWGTVSPVTGVGNLKTEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQEVVDGKGILEHIVSRI
Sbjct: 1 MVTSQLFLGTAATLIASSAAFVAPIAAPRSSIARVAASSTPKMTAGSDYAASLPGAPFGMAAEGKYFDPAGLATNQDPETIKKWREAELKHGRVSMLAAVGILVSEVFHPLFMGPAYIGPAVEHAQQIATVYPLFWVASLGMIAFIEGQTIKDAWGTVSPVTGVGNLKTEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQEVVDGKGILEHIVSRI 231
BLAST of mRNA_E-siliculosus-1a_F_contig153.3071.1 vs. uniprot
Match: D7G7Q6_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q6_ECTSI) HSP 1 Score: 247 bits (630), Expect = 2.740e-79 Identity = 134/224 (59.82%), Postives = 168/224 (75.00%), Query Frame = 1
Query: 1 MVTSQLFLGTAATLIASSAAFVAPIAAPRSSTARVAASSTPKMTAGSDYAASLPGAPFGMAAEGKYFDPAGLATNQDPETIKKWREAELKHGRVSMLAAVGILVSEVFHPLFMGPAYIGPAVEHAQQIATVYPLFWVASLGMIAFIEGQTIKDAWGTVSPVTGVGNLKTEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQEVVDGKGIL 672
MV +QLFLG+AATLIASS AFVAP+A S A ++SS KM+AGSDY A+LPGAPFG +GK FDP L+ DP IKKWREAE+KHGRV+MLA++G+LV+E +HPLFMGP YIGPAV+H Q+I+ YP FWV SL +AFIE TI A+ T S VTG G LK +Y PGDLGFDPL L P+D +++++EL+ GR AMIG+ GM+VQE+++ IL
Sbjct: 1 MVATQLFLGSAATLIASSTAFVAPMAV--RSAAPASSSSALKMSAGSDYVATLPGAPFG---DGKIFDPLNLSDGADPADIKKWREAEIKHGRVAMLASLGVLVAEQYHPLFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKEDYVPGDLGFDPLNLKPEDEAALDVMKTKELNNGRLAMIGIAGMLVQELINPADIL 219
BLAST of mRNA_E-siliculosus-1a_F_contig153.3071.1 vs. uniprot
Match: D7G7S1_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S1_ECTSI) HSP 1 Score: 239 bits (611), Expect = 2.150e-76 Identity = 130/221 (58.82%), Postives = 161/221 (72.85%), Query Frame = 1
Query: 10 SQLFLGTAATLIASSAAFVAPIAAPRSSTARVAASSTPKMTAGSDYAASLPGAPFGMAAEGKYFDPAGLATNQDPETIKKWREAELKHGRVSMLAAVGILVSEVFHPLFMGPAYIGPAVEHAQQIATVYPLFWVASLGMIAFIEGQTIKDAWGTVSPVTGVGNLKTEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQEVVDGKGIL 672
S +FLGTAATLIASS AFVAP+A S A +++S KM+AGSDY A+LPGAPFG +GK FDP L+ +P IK WREAE+KHGRV+MLA VG++V+E +HPLFMGP YIGPAV+H Q+I+ +P FW SL +AFIE TI A+ SPVTG G L+ EY PGDLGFDPL L PKD +Q++EL+ GR AMIG+ GM+VQE+V+ IL
Sbjct: 5 SNMFLGTAATLIASSTAFVAPMAV--RSAAPASSASALKMSAGSDYVATLPGAPFG---DGKIFDPLELSDGAEPGEIKLWREAEIKHGRVAMLATVGVIVAEQYHPLFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTITKAYAEPSPVTGEGGLRDEYSPGDLGFDPLNLKPKDQAGLEKMQTKELNNGRLAMIGIAGMLVQELVNPADIL 220
BLAST of mRNA_E-siliculosus-1a_F_contig153.3071.1 vs. uniprot
Match: D7G7Q9_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q9_ECTSI) HSP 1 Score: 233 bits (595), Expect = 6.320e-74 Identity = 128/226 (56.64%), Postives = 163/226 (72.12%), Query Frame = 1
Query: 1 MVTSQLFLGTAATLIASSAAFVAPIAAPRSSTARVAASSTPKMTAGSDYAASLPGAPFGMAAEGKYFDPAGLATNQDPETIKKWREAELKHGRVSMLAAVGILVSEVFHPLFMGPAYIGPAVEHAQQIATVYPLFWVASLGMIAFIEGQTIKDAWGTVSPVTGVGNLKTEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQEVVDGKGILEH 678
MV SQ+FLGTAA LIASS AFVAP+A S A +A+S KM+AGSDY A+LPGAPF ++GK FDP L+ P IKKWREAE+KHGRV+MLA++GILV+E +HPLFMG +IGPA+ H Q+I+ +P FW SL +AFIE TI A+ T S VTG G LK +Y PGDLGFDPL L P +++++EL+ GR AMIG+ GM+ QE+V+G+ IL +
Sbjct: 1 MVASQMFLGTAAALIASSTAFVAPVAV--RSAAPASAASALKMSAGSDYVATLPGAPF---SDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDGEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDILPN 221
BLAST of mRNA_E-siliculosus-1a_F_contig153.3071.1 vs. uniprot
Match: D7G7S0_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S0_ECTSI) HSP 1 Score: 230 bits (586), Expect = 1.200e-72 Identity = 126/221 (57.01%), Postives = 157/221 (71.04%), Query Frame = 1
Query: 10 SQLFLGTAATLIASSAAFVAPIAAPRSSTARVAASSTPKMTAGSDYAASLPGAPFGMAAEGKYFDPAGLATNQDPETIKKWREAELKHGRVSMLAAVGILVSEVFHPLFMGPAYIGPAVEHAQQIATVYPLFWVASLGMIAFIEGQTIKDAWGTVSPVTGVGNLKTEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQEVVDGKGIL 672
S +FLGTAATLIASSAAFV P+A S A +++S KM+AG+DY A+LPG A GK FD LA DP IK WREAE+KHGRV+MLA VG++V+E +HP FMGP YIGPAV+H Q+I +P FW SL +AFIE TIK A+ SPVTG G L+ EY PGDLGFDP + PKD +Q++EL+ GR AMIG++GM+VQE+V+G+ IL
Sbjct: 5 SNMFLGTAATLIASSAAFVTPMAV--RSAAPASSASALKMSAGTDYLATLPG------ANGKIFDLLELADGADPGEIKLWREAEIKHGRVAMLATVGVVVAEQYHPFFMGPDYIGPAVDHFQEITAKFPQFWAYSLLGMAFIEYNTIKKAYAEPSPVTGEGGLRDEYSPGDLGFDPAKIKPKDQAGLEKMQNKELNNGRLAMIGIVGMLVQELVNGQDIL 217
BLAST of mRNA_E-siliculosus-1a_F_contig153.3071.1 vs. uniprot
Match: D7G5B4_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5B4_ECTSI) HSP 1 Score: 216 bits (550), Expect = 1.810e-66 Identity = 115/219 (52.51%), Postives = 158/219 (72.15%), Query Frame = 1
Query: 1 MVTSQ-LFLGTAATLIASSAAFVAPIAAPRSSTARVAASSTPKMTAGSDYAASLPGAPFGMAAEGKYFDPAGLATNQDPETIKKWREAELKHGRVSMLAAVGILVSEVFHPLFMGPAYIGPAVEHAQQIATVYPLFWVASLGMIAFIEGQTIKDAWGTVSPVTGVGNLKTEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQEVV 654
MVTS +G A+ AS AF+ P P + +AR S+ +M+AGSDY ++LPGAPF A+GK +DP GL++ DPE IKKWREAE+KHGRV+MLA+VG+LV+E FHPLF+GP YIGPA+ H ++I +P FW +L IA++E + I + + PVTG G ++ +Y PGDLGFDPLGLAP+D + +++++EL+ GR AMIG+ GMIVQE+V
Sbjct: 52 MVTSTGALVGMASWCFASCEAFIVPT--PTTLSARP-TSTAARMSAGSDYVSTLPGAPF---ADGKVWDPVGLSSEADPEDIKKWREAEIKHGRVAMLASVGVLVAENFHPLFLGPDYIGPAIFHFEEITARFPQFWALTLLAIAWLEYRQINIGFAELDPVTGEGGMRLDYVPGDLGFDPLGLAPEDEHELNVMKTKELNHGRLAMIGITGMIVQELV 264
BLAST of mRNA_E-siliculosus-1a_F_contig153.3071.1 vs. uniprot
Match: D7G7S5_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S5_ECTSI) HSP 1 Score: 182 bits (463), Expect = 2.400e-54 Identity = 87/158 (55.06%), Postives = 114/158 (72.15%), Query Frame = 1
Query: 199 FDPAGLATNQDPETIKKWREAELKHGRVSMLAAVGILVSEVFHPLFMGPAYIGPAVEHAQQIATVYPLFWVASLGMIAFIEGQTIKDAWGTVSPVTGVGNLKTEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQEVVDGKGIL 672
FDP GL+ P IKKWREAE+KHGRV+MLA++G++V+E +HP FMGP YIGPAV+H Q+I+ +P FW SL +AF+E TI A+ T S VTG G LK +Y PGDLGFDPL L P D +++++EL+ GR AMIG+ GM+ QE+V+ IL
Sbjct: 38 FDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFVEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADIL 195
BLAST of mRNA_E-siliculosus-1a_F_contig153.3071.1 vs. uniprot
Match: A0A6H5K8D0_9PHAE (LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K8D0_9PHAE) HSP 1 Score: 181 bits (459), Expect = 8.520e-54 Identity = 111/224 (49.55%), Postives = 140/224 (62.50%), Query Frame = 1
Query: 1 MVTSQLFLGTAATLIASSAAFVAPIAAPRSSTARVAASSTPKMTAGSDYAASLPGAPFGMAAEGKYFDPAGLATNQDPETIKKWREAELKHGRVSMLAAVGILVSEVFHPLFMGPAYIGPAVEHAQQIATVYPLFWVASLGMIAFIEGQTIKDAWGTVSPVTGVGNLKTEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQEVVDGKGIL 672
MV SQ+F+GTAATLIASS AFVAP+A S +S KM+AGSDY A+LPGAPF ++GK FDP GL+ P IKKWREAE+KHGRV+MLA++G++V+E FW SL +AFIE TI A+ T S VTG G LK +Y PGDLGFDPL L P D +++++EL+ GR AMIG+ GM+ QE+V+ IL
Sbjct: 1 MVASQMFIGTAATLIASSTAFVAPMAV--RSVTTTPSSPGLKMSAGSDYVATLPGAPF---SDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAE----------------------------FWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADIL 191
BLAST of mRNA_E-siliculosus-1a_F_contig153.3071.1 vs. uniprot
Match: D7G7Q7_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Q7_ECTSI) HSP 1 Score: 180 bits (456), Expect = 1.560e-53 Identity = 88/163 (53.99%), Postives = 113/163 (69.33%), Query Frame = 1
Query: 193 KYFDPAGLATNQDPETIKKWREAELKHGRVSMLAAVGILVSEVFHPLFMGPAYIGPAVEHAQQIATVYPLFWVASLGMIAFIEGQTIKDAWGTVSPVTGVGNLKTEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQEVVDGKGILEHI 681
K FDP GLA + IK WREAE+KHGRV+MLA++G+LV+E +HP FMGP YIGPAV+H Q+I+ +P FW SL +A IE TI A+ S VTG G L+ EY PGDLGFDPL L P D +Q++EL+ GR AMIG+ G +VQE+V+ IL+ +
Sbjct: 15 KIFDPLGLADGAEVGDIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISARFPEFWAFSLLALALIEYNTITKAYAEPSFVTGEGGLRDEYSPGDLGFDPLNLKPTDQTALETMQTKELNNGRLAMIGIAGTLVQELVNPTNILDFL 177
BLAST of mRNA_E-siliculosus-1a_F_contig153.3071.1 vs. uniprot
Match: A0A6H5JWB4_9PHAE (LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWB4_9PHAE) HSP 1 Score: 183 bits (464), Expect = 4.020e-52 Identity = 88/158 (55.70%), Postives = 114/158 (72.15%), Query Frame = 1
Query: 199 FDPAGLATNQDPETIKKWREAELKHGRVSMLAAVGILVSEVFHPLFMGPAYIGPAVEHAQQIATVYPLFWVASLGMIAFIEGQTIKDAWGTVSPVTGVGNLKTEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQEVVDGKGIL 672
FDP GL+ P IKKWREAE+KHGRV+MLA++G++V+E +HP FMGP YIGPAV+H Q+I+ +P FW SL +AFIE TI A+ T S VTG G LK +Y PGDLGFDPL L P D +++++EL+ GR AMIG+ GM+ QE+V+ IL
Sbjct: 234 FDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADIL 391 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig153.3071.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig153.3071.1 >prot_E-siliculosus-1a_F_contig153.3071.1 ID=prot_E-siliculosus-1a_F_contig153.3071.1|Name=mRNA_E-siliculosus-1a_F_contig153.3071.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=232bp MVTSQLFLGTAATLIASSAAFVAPIAAPRSSTARVAASSTPKMTAGSDYAback to top mRNA from alignment at E-siliculosus-1a_F_contig153:36607..39705- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig153.3071.1 ID=mRNA_E-siliculosus-1a_F_contig153.3071.1|Name=mRNA_E-siliculosus-1a_F_contig153.3071.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3099bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig153:36607..39705- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig153:36607..39705- >mRNA_E-siliculosus-1a_F_contig153.3071.1 ID=mRNA_E-siliculosus-1a_F_contig153.3071.1|Name=mRNA_E-siliculosus-1a_F_contig153.3071.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1392bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig153:36607..39705- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |