mRNA_E-siliculosus-1a_F_contig153.3071.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig153.3071.1
Unique NamemRNA_E-siliculosus-1a_F_contig153.3071.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig153.3071.1 vs. uniprot
Match: D7FQG7_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQG7_ECTSI)

HSP 1 Score: 445 bits (1145), Expect = 1.750e-157
Identity = 230/231 (99.57%), Postives = 230/231 (99.57%), Query Frame = 1
Query:    1 MVTSQLFLGTAATLIASSAAFVAPIAAPRSSTARVAASSTPKMTAGSDYAASLPGAPFGMAAEGKYFDPAGLATNQDPETIKKWREAELKHGRVSMLAAVGILVSEVFHPLFMGPAYIGPAVEHAQQIATVYPLFWVASLGMIAFIEGQTIKDAWGTVSPVTGVGNLKTEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQEVVDGKGILEHIVSRI 693
            MVTSQLFLGTAATLIASSAAFVAPIAAPRSS ARVAASSTPKMTAGSDYAASLPGAPFGMAAEGKYFDPAGLATNQDPETIKKWREAELKHGRVSMLAAVGILVSEVFHPLFMGPAYIGPAVEHAQQIATVYPLFWVASLGMIAFIEGQTIKDAWGTVSPVTGVGNLKTEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQEVVDGKGILEHIVSRI
Sbjct:    1 MVTSQLFLGTAATLIASSAAFVAPIAAPRSSIARVAASSTPKMTAGSDYAASLPGAPFGMAAEGKYFDPAGLATNQDPETIKKWREAELKHGRVSMLAAVGILVSEVFHPLFMGPAYIGPAVEHAQQIATVYPLFWVASLGMIAFIEGQTIKDAWGTVSPVTGVGNLKTEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQEVVDGKGILEHIVSRI 231          
BLAST of mRNA_E-siliculosus-1a_F_contig153.3071.1 vs. uniprot
Match: D7G7Q6_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q6_ECTSI)

HSP 1 Score: 247 bits (630), Expect = 2.740e-79
Identity = 134/224 (59.82%), Postives = 168/224 (75.00%), Query Frame = 1
Query:    1 MVTSQLFLGTAATLIASSAAFVAPIAAPRSSTARVAASSTPKMTAGSDYAASLPGAPFGMAAEGKYFDPAGLATNQDPETIKKWREAELKHGRVSMLAAVGILVSEVFHPLFMGPAYIGPAVEHAQQIATVYPLFWVASLGMIAFIEGQTIKDAWGTVSPVTGVGNLKTEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQEVVDGKGIL 672
            MV +QLFLG+AATLIASS AFVAP+A    S A  ++SS  KM+AGSDY A+LPGAPFG   +GK FDP  L+   DP  IKKWREAE+KHGRV+MLA++G+LV+E +HPLFMGP YIGPAV+H Q+I+  YP FWV SL  +AFIE  TI  A+ T S VTG G LK +Y PGDLGFDPL L P+D     +++++EL+ GR AMIG+ GM+VQE+++   IL
Sbjct:    1 MVATQLFLGSAATLIASSTAFVAPMAV--RSAAPASSSSALKMSAGSDYVATLPGAPFG---DGKIFDPLNLSDGADPADIKKWREAEIKHGRVAMLASLGVLVAEQYHPLFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKEDYVPGDLGFDPLNLKPEDEAALDVMKTKELNNGRLAMIGIAGMLVQELINPADIL 219          
BLAST of mRNA_E-siliculosus-1a_F_contig153.3071.1 vs. uniprot
Match: D7G7S1_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S1_ECTSI)

HSP 1 Score: 239 bits (611), Expect = 2.150e-76
Identity = 130/221 (58.82%), Postives = 161/221 (72.85%), Query Frame = 1
Query:   10 SQLFLGTAATLIASSAAFVAPIAAPRSSTARVAASSTPKMTAGSDYAASLPGAPFGMAAEGKYFDPAGLATNQDPETIKKWREAELKHGRVSMLAAVGILVSEVFHPLFMGPAYIGPAVEHAQQIATVYPLFWVASLGMIAFIEGQTIKDAWGTVSPVTGVGNLKTEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQEVVDGKGIL 672
            S +FLGTAATLIASS AFVAP+A    S A  +++S  KM+AGSDY A+LPGAPFG   +GK FDP  L+   +P  IK WREAE+KHGRV+MLA VG++V+E +HPLFMGP YIGPAV+H Q+I+  +P FW  SL  +AFIE  TI  A+   SPVTG G L+ EY PGDLGFDPL L PKD      +Q++EL+ GR AMIG+ GM+VQE+V+   IL
Sbjct:    5 SNMFLGTAATLIASSTAFVAPMAV--RSAAPASSASALKMSAGSDYVATLPGAPFG---DGKIFDPLELSDGAEPGEIKLWREAEIKHGRVAMLATVGVIVAEQYHPLFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTITKAYAEPSPVTGEGGLRDEYSPGDLGFDPLNLKPKDQAGLEKMQTKELNNGRLAMIGIAGMLVQELVNPADIL 220          
BLAST of mRNA_E-siliculosus-1a_F_contig153.3071.1 vs. uniprot
Match: D7G7Q9_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q9_ECTSI)

HSP 1 Score: 233 bits (595), Expect = 6.320e-74
Identity = 128/226 (56.64%), Postives = 163/226 (72.12%), Query Frame = 1
Query:    1 MVTSQLFLGTAATLIASSAAFVAPIAAPRSSTARVAASSTPKMTAGSDYAASLPGAPFGMAAEGKYFDPAGLATNQDPETIKKWREAELKHGRVSMLAAVGILVSEVFHPLFMGPAYIGPAVEHAQQIATVYPLFWVASLGMIAFIEGQTIKDAWGTVSPVTGVGNLKTEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQEVVDGKGILEH 678
            MV SQ+FLGTAA LIASS AFVAP+A    S A  +A+S  KM+AGSDY A+LPGAPF   ++GK FDP  L+    P  IKKWREAE+KHGRV+MLA++GILV+E +HPLFMG  +IGPA+ H Q+I+  +P FW  SL  +AFIE  TI  A+ T S VTG G LK +Y PGDLGFDPL L P       +++++EL+ GR AMIG+ GM+ QE+V+G+ IL +
Sbjct:    1 MVASQMFLGTAAALIASSTAFVAPVAV--RSAAPASAASALKMSAGSDYVATLPGAPF---SDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDGEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDILPN 221          
BLAST of mRNA_E-siliculosus-1a_F_contig153.3071.1 vs. uniprot
Match: D7G7S0_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S0_ECTSI)

HSP 1 Score: 230 bits (586), Expect = 1.200e-72
Identity = 126/221 (57.01%), Postives = 157/221 (71.04%), Query Frame = 1
Query:   10 SQLFLGTAATLIASSAAFVAPIAAPRSSTARVAASSTPKMTAGSDYAASLPGAPFGMAAEGKYFDPAGLATNQDPETIKKWREAELKHGRVSMLAAVGILVSEVFHPLFMGPAYIGPAVEHAQQIATVYPLFWVASLGMIAFIEGQTIKDAWGTVSPVTGVGNLKTEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQEVVDGKGIL 672
            S +FLGTAATLIASSAAFV P+A    S A  +++S  KM+AG+DY A+LPG      A GK FD   LA   DP  IK WREAE+KHGRV+MLA VG++V+E +HP FMGP YIGPAV+H Q+I   +P FW  SL  +AFIE  TIK A+   SPVTG G L+ EY PGDLGFDP  + PKD      +Q++EL+ GR AMIG++GM+VQE+V+G+ IL
Sbjct:    5 SNMFLGTAATLIASSAAFVTPMAV--RSAAPASSASALKMSAGTDYLATLPG------ANGKIFDLLELADGADPGEIKLWREAEIKHGRVAMLATVGVVVAEQYHPFFMGPDYIGPAVDHFQEITAKFPQFWAYSLLGMAFIEYNTIKKAYAEPSPVTGEGGLRDEYSPGDLGFDPAKIKPKDQAGLEKMQNKELNNGRLAMIGIVGMLVQELVNGQDIL 217          
BLAST of mRNA_E-siliculosus-1a_F_contig153.3071.1 vs. uniprot
Match: D7G5B4_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5B4_ECTSI)

HSP 1 Score: 216 bits (550), Expect = 1.810e-66
Identity = 115/219 (52.51%), Postives = 158/219 (72.15%), Query Frame = 1
Query:    1 MVTSQ-LFLGTAATLIASSAAFVAPIAAPRSSTARVAASSTPKMTAGSDYAASLPGAPFGMAAEGKYFDPAGLATNQDPETIKKWREAELKHGRVSMLAAVGILVSEVFHPLFMGPAYIGPAVEHAQQIATVYPLFWVASLGMIAFIEGQTIKDAWGTVSPVTGVGNLKTEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQEVV 654
            MVTS    +G A+   AS  AF+ P   P + +AR   S+  +M+AGSDY ++LPGAPF   A+GK +DP GL++  DPE IKKWREAE+KHGRV+MLA+VG+LV+E FHPLF+GP YIGPA+ H ++I   +P FW  +L  IA++E + I   +  + PVTG G ++ +Y PGDLGFDPLGLAP+D  +  +++++EL+ GR AMIG+ GMIVQE+V
Sbjct:   52 MVTSTGALVGMASWCFASCEAFIVPT--PTTLSARP-TSTAARMSAGSDYVSTLPGAPF---ADGKVWDPVGLSSEADPEDIKKWREAEIKHGRVAMLASVGVLVAENFHPLFLGPDYIGPAIFHFEEITARFPQFWALTLLAIAWLEYRQINIGFAELDPVTGEGGMRLDYVPGDLGFDPLGLAPEDEHELNVMKTKELNHGRLAMIGITGMIVQELV 264          
BLAST of mRNA_E-siliculosus-1a_F_contig153.3071.1 vs. uniprot
Match: D7G7S5_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S5_ECTSI)

HSP 1 Score: 182 bits (463), Expect = 2.400e-54
Identity = 87/158 (55.06%), Postives = 114/158 (72.15%), Query Frame = 1
Query:  199 FDPAGLATNQDPETIKKWREAELKHGRVSMLAAVGILVSEVFHPLFMGPAYIGPAVEHAQQIATVYPLFWVASLGMIAFIEGQTIKDAWGTVSPVTGVGNLKTEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQEVVDGKGIL 672
            FDP GL+    P  IKKWREAE+KHGRV+MLA++G++V+E +HP FMGP YIGPAV+H Q+I+  +P FW  SL  +AF+E  TI  A+ T S VTG G LK +Y PGDLGFDPL L P D     +++++EL+ GR AMIG+ GM+ QE+V+   IL
Sbjct:   38 FDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFVEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADIL 195          
BLAST of mRNA_E-siliculosus-1a_F_contig153.3071.1 vs. uniprot
Match: A0A6H5K8D0_9PHAE (LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K8D0_9PHAE)

HSP 1 Score: 181 bits (459), Expect = 8.520e-54
Identity = 111/224 (49.55%), Postives = 140/224 (62.50%), Query Frame = 1
Query:    1 MVTSQLFLGTAATLIASSAAFVAPIAAPRSSTARVAASSTPKMTAGSDYAASLPGAPFGMAAEGKYFDPAGLATNQDPETIKKWREAELKHGRVSMLAAVGILVSEVFHPLFMGPAYIGPAVEHAQQIATVYPLFWVASLGMIAFIEGQTIKDAWGTVSPVTGVGNLKTEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQEVVDGKGIL 672
            MV SQ+F+GTAATLIASS AFVAP+A    S     +S   KM+AGSDY A+LPGAPF   ++GK FDP GL+    P  IKKWREAE+KHGRV+MLA++G++V+E                            FW  SL  +AFIE  TI  A+ T S VTG G LK +Y PGDLGFDPL L P D     +++++EL+ GR AMIG+ GM+ QE+V+   IL
Sbjct:    1 MVASQMFIGTAATLIASSTAFVAPMAV--RSVTTTPSSPGLKMSAGSDYVATLPGAPF---SDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAE----------------------------FWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADIL 191          
BLAST of mRNA_E-siliculosus-1a_F_contig153.3071.1 vs. uniprot
Match: D7G7Q7_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Q7_ECTSI)

HSP 1 Score: 180 bits (456), Expect = 1.560e-53
Identity = 88/163 (53.99%), Postives = 113/163 (69.33%), Query Frame = 1
Query:  193 KYFDPAGLATNQDPETIKKWREAELKHGRVSMLAAVGILVSEVFHPLFMGPAYIGPAVEHAQQIATVYPLFWVASLGMIAFIEGQTIKDAWGTVSPVTGVGNLKTEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQEVVDGKGILEHI 681
            K FDP GLA   +   IK WREAE+KHGRV+MLA++G+LV+E +HP FMGP YIGPAV+H Q+I+  +P FW  SL  +A IE  TI  A+   S VTG G L+ EY PGDLGFDPL L P D      +Q++EL+ GR AMIG+ G +VQE+V+   IL+ +
Sbjct:   15 KIFDPLGLADGAEVGDIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISARFPEFWAFSLLALALIEYNTITKAYAEPSFVTGEGGLRDEYSPGDLGFDPLNLKPTDQTALETMQTKELNNGRLAMIGIAGTLVQELVNPTNILDFL 177          
BLAST of mRNA_E-siliculosus-1a_F_contig153.3071.1 vs. uniprot
Match: A0A6H5JWB4_9PHAE (LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWB4_9PHAE)

HSP 1 Score: 183 bits (464), Expect = 4.020e-52
Identity = 88/158 (55.70%), Postives = 114/158 (72.15%), Query Frame = 1
Query:  199 FDPAGLATNQDPETIKKWREAELKHGRVSMLAAVGILVSEVFHPLFMGPAYIGPAVEHAQQIATVYPLFWVASLGMIAFIEGQTIKDAWGTVSPVTGVGNLKTEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQEVVDGKGIL 672
            FDP GL+    P  IKKWREAE+KHGRV+MLA++G++V+E +HP FMGP YIGPAV+H Q+I+  +P FW  SL  +AFIE  TI  A+ T S VTG G LK +Y PGDLGFDPL L P D     +++++EL+ GR AMIG+ GM+ QE+V+   IL
Sbjct:  234 FDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADIL 391          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig153.3071.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQG7_ECTSI1.750e-15799.57Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
D7G7Q6_ECTSI2.740e-7959.82Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
D7G7S1_ECTSI2.150e-7658.82Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
D7G7Q9_ECTSI6.320e-7456.64Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
D7G7S0_ECTSI1.200e-7257.01Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
D7G5B4_ECTSI1.810e-6652.51Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
D7G7S5_ECTSI2.400e-5455.06Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
A0A6H5K8D0_9PHAE8.520e-5449.55LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A... [more]
D7G7Q7_ECTSI1.560e-5353.99Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
A0A6H5JWB4_9PHAE4.020e-5255.70LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig153contigE-siliculosus-1a_F_contig153:36607..39705 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size696
Model size767
Exons4
Ec32 orthologEc-01_006160.1
Ec32 ortholog descriptionLight harvesting complex protein
Hectar predicted targeting categorychloroplast
Taxonomic scopeEukaryota
BRITEko00000,ko00001,ko00194
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.U
EggNOG OGs2BEWM@1,2S15M@2759
EggNOG free text desc.Chlorophyll A-B binding protein
KEGG Pathwayko00196,ko01100,map00196,map01100
KEGG koko:K08914
Seed eggNOG ortholog2880.D7FQG7
Seed ortholog evalue8e-123
Seed ortholog score446.4
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig153.3071.1prot_E-siliculosus-1a_F_contig153.3071.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig153 36678..39705 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928039.8936129-UTR-E-siliculosus-1a_F_contig153:36606..366771622928039.8936129-UTR-E-siliculosus-1a_F_contig153:36606..36677Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig153 36607..36677 -
1696318783.4851372-UTR-E-siliculosus-1a_F_contig153:36606..366771696318783.4851372-UTR-E-siliculosus-1a_F_contig153:36606..36677Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig153 36607..36677 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928039.9124048-CDS-E-siliculosus-1a_F_contig153:36677..368521622928039.9124048-CDS-E-siliculosus-1a_F_contig153:36677..36852Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig153 36678..36852 -
1696318783.5014791-CDS-E-siliculosus-1a_F_contig153:36677..368521696318783.5014791-CDS-E-siliculosus-1a_F_contig153:36677..36852Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig153 36678..36852 -
1622928039.9297714-CDS-E-siliculosus-1a_F_contig153:37147..372901622928039.9297714-CDS-E-siliculosus-1a_F_contig153:37147..37290Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig153 37148..37290 -
1696318783.5106206-CDS-E-siliculosus-1a_F_contig153:37147..372901696318783.5106206-CDS-E-siliculosus-1a_F_contig153:37147..37290Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig153 37148..37290 -
1622928039.9417963-CDS-E-siliculosus-1a_F_contig153:37855..380441622928039.9417963-CDS-E-siliculosus-1a_F_contig153:37855..38044Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig153 37856..38044 -
1696318783.5206141-CDS-E-siliculosus-1a_F_contig153:37855..380441696318783.5206141-CDS-E-siliculosus-1a_F_contig153:37855..38044Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig153 37856..38044 -
1622928039.9526129-CDS-E-siliculosus-1a_F_contig153:39516..397051622928039.9526129-CDS-E-siliculosus-1a_F_contig153:39516..39705Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig153 39517..39705 -
1696318783.5281816-CDS-E-siliculosus-1a_F_contig153:39516..397051696318783.5281816-CDS-E-siliculosus-1a_F_contig153:39516..39705Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig153 39517..39705 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig153.3071.1

>prot_E-siliculosus-1a_F_contig153.3071.1 ID=prot_E-siliculosus-1a_F_contig153.3071.1|Name=mRNA_E-siliculosus-1a_F_contig153.3071.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=232bp
MVTSQLFLGTAATLIASSAAFVAPIAAPRSSTARVAASSTPKMTAGSDYA
ASLPGAPFGMAAEGKYFDPAGLATNQDPETIKKWREAELKHGRVSMLAAV
GILVSEVFHPLFMGPAYIGPAVEHAQQIATVYPLFWVASLGMIAFIEGQT
IKDAWGTVSPVTGVGNLKTEYYPGDLGFDPLGLAPKDGEDFRLIQSQELD
LGRYAMIGVLGMIVQEVVDGKGILEHIVSRI*
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mRNA from alignment at E-siliculosus-1a_F_contig153:36607..39705-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig153.3071.1 ID=mRNA_E-siliculosus-1a_F_contig153.3071.1|Name=mRNA_E-siliculosus-1a_F_contig153.3071.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3099bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig153:36607..39705- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGTCACCTCCCAGTTGTTCCTTGGCACTGCCGCCACTCTCATCGCCTC ATCGGCGGCGTTCGTTGCACCGATCGCGGCGCCGCGATCCTCTACTGCGC GTGTCGCTGCGTCTTCGACCCCCAAGATGACCGCAGGCTCGGACTACGCA GCTTCATTGCCGGGTGCGCCATTCGGAATGGCGGCCGAGGTATGCTTGGT ATTGCTGTAGATCGGATACACTTGCGTCGTTGTGGGTTAGCGGTGTAACC CAGGCACAGCAACTTTGCTGGTTTTCGGTTTTCGCAATCGTTCGAAGTGT CACGTTTCAGAATGACGCATCCTGTGCTGTGATGTCACAACAATGTTCTG CGTAACACATGATGCTGACCAGCCATGTAGCAAAACGAGCAAAGCTTTTG CGTCCGGATGGATTCGGCTCTCATCCTAGACGTGAAAAAACAGGCGTGCA TCACGCGGGGAACTTACACCCAAGTAGGTGGGCATGTATACTACCATTGC TATTGATGGGCCTTACGACCTGTCTAGGCCAATCCCTCATGAACCTCACC GTAGTCTGCTGTCATACTCACCGTGAACATCAATCACCCTGTGACGGCAC CTCTGAACGTGTTTCACTACGCTGTAGGTGCGTTGGAGAAACTCGTACCC AACATGATGTAATCTAACACCGGAAAGGGTGTCAAAAATTCTGCCCCTGA CATGGCAGGATTGCTGGTGTCACGTGCGTTTGCTGATGACACGCGCCTTC TCGAACACGACAGTCGTTTACGTTGTACAGAGATACAATCATCAGCTCCC CTTCCACAACAAACGCTTATCATCCCACACTCTCTCACCAAGAACGAATA GCTTTCACCACATGTCGTGTTTGCCCCCTGTGTCTAGAGTACACGGTAAA AGGAAGGTTTGTTCGTCGAGCAGATAGAAAAAACTGGTGTTTATTTTGTA ACAGTCGAATTAGAATTTGGCTTCATTGTCTATCGGAAACCCAGGGTCAC GGTGTTTGGAATTATTAGTCTAAAGCTGCGGGGTGCCATTCCGTGCTCGA GTCCAGCAGGGGCTTGTAGCAAAGTCGAGTAACGTTTGAGAGCTACAGAG CGCGTGAAGCAACGGAAGGACAGCAGCAGCCGCCTAGCGCAGTGGCGCCG GCAGTTCAGAAAAATTCATAAATGTACCTTATATGCCAATGCAGGAAAAC CGGCACTAGGATACATGTGCTCAGAGACGCTAAGTTACGCCCTCGTTTAA TCGATGGTGCCCAAATTGTAATCACCAATGGCGTTGGTGCGCTAAACCAC CGGGAACTATTGGCTTCAACTGAACTTTTCGCATGACACGTGCTCCCTTA TGTCATCACTCGTATCGCAACAACCGAAGACAAGACTTCTCGTGCATGTA TTACAGTAGATATCCAACAGAGTATTGGGGCGAATCCTAAGGTTGTGATT GGAAGGAACCCAGCTGTACGCTGAATGCGGGCTTCTGCCACCAGATCCGC CATTCCACACGCCACGTCATGTGTATTTAGAAAGTATACATATTCTACCG TCACTGAAGACCACCCGTTTACGCCGCCAATATTTCCGCGAACGCACGGA GTAACCACCGACTATTTCCTGCCTTTTCCTTCCTCACCCACCCCTGCCCA AATCCTGCCAGGGAAAGTACTTTGACCCTGCAGGGTTGGCTACGAATCAG GATCCCGAGACAATCAAGAAGTGGCGCGAGGCTGAGTTGAAGCACGGCCG CGTGTCGATGTTGGCTGCGGTGGGTATACTTGTCAGCGAGGTATTCCACC CGCTGTTCATGGGCCCCGCGTACATCGGCCCTGCGGTGGAGCACGCTCAG GTACAATCACCGCATATCGGTTGTCCTCCTTGTTTTCCTTGGCACTTTGC GCCTTGATGTGGCGAGCCACTCAAGTTAAAAAAAACTACCAATGGCCCCA GCACCTCATCCGCTGCAGCATCAAACCAGTGATGGCCAACGGAAAAAAGT GGCAAACGAATATTATTCTTCCGTGGTCGTCATCGTTCCCGGGTAGCCCG ACCCACCACATGCTCGGTTCTTGAAGTTGCGCCGTACACCAAAACGTTTT GCGGCACGGTGAATCTTTGTTCAAACCAGGGCGAAGTTCGTTCGTGCTCA TGTGTCGTGTGCGTGGTTTTGGGGCTTCAGGTTTACGTTTCTTCGAATCT CTTTGTCTGTCCCCTGTCTCAAATGTCTCACAAATTGACGAACGGGTGTA GACCTGGATTTCAAGGACGGATAAAGAAACTCACCAGGATAATTGAATCT GCGTCCCATAATCAATGACATCAATCTCGTGCCTACCCTTCGTTGCTAAG TTTTTCATATCTTGGTTCCCGCGCCCTGACAAATCGCGTGCACTCTGTTC CTACCCCCATTCCAGCAAATCGCGACGGTCTACCCCCTGTTCTGGGTAGC TTCGCTGGGCATGATCGCGTTCATTGAGGGACAGACGATCAAGGACGCGT GGGGCACCGTCAGCCCCGTGACTGGTGTGGGAAACTTGAAAACCGAGTAC TACCCGGGGTGAGTGCCGAGCGTCTTGTACAAATATTAAGGTGTAGTTCT CGGTTGCGGAGAGTTGGACGTCCGCGCACCGGATGATGATCAGATGTCCA CAACTGAAATGCTTGACATTTACCTGGGTGGGTACCGCTTTTTGTAGTAC CCCCGCGTTGAGCCCGCCGAGATGATATTCAAACTCGTAAGGAAAGAGCA GGGTCTGGTCCAGGGATTCGGCGTGCACCACTAAGGGCTTCCAGTCCTAA TGATCTGTCTGCATCTCTCCCCTACCCTTCCCGATTCGATCGTTGCTTCG CAGAGACCTTGGGTTCGACCCGCTGGGTCTCGCGCCCAAAGACGGCGAGG ACTTCCGGTTGATCCAGTCTCAGGAGCTCGACCTCGGGCGGTACGCCATG ATTGGCGTGTTGGGGATGATTGTTCAGGAGGTTGTAGACGGGAAGGGTAT TCTGGAGCACATCGTCTCGCGGATTTAGACTTTGTTTGTCGTGCGGTGGG TTTTCTTCCCTCGTGGCGTATTTTATGTATCGTGACTCCGGTGACGCGC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig153:36607..39705-

>mRNA_E-siliculosus-1a_F_contig153.3071.1 ID=mRNA_E-siliculosus-1a_F_contig153.3071.1|Name=mRNA_E-siliculosus-1a_F_contig153.3071.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1392bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig153:36607..39705- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGTCACCTCCCAGTTGTTCCTTGGCACTGCCGCCACTCTCATCGCCTC
ATCGGCGGCGTTCGTTGCACCGATCGCGGCGCCGCGATCCTCTACTGCGC
GTGTCGCTGCGTCTTCGACCCCCAAGATGACCGCAGGCTCGGACTACGCA
GCTTCATTGCCGGGTGCGCCATTCGGAATGGCGGCCGAGATGGTCACCTC
CCAGTTGTTCCTTGGCACTGCCGCCACTCTCATCGCCTCATCGGCGGCGT
TCGTTGCACCGATCGCGGCGCCGCGATCCTCTACTGCGCGTGTCGCTGCG
TCTTCGACCCCCAAGATGACCGCAGGCTCGGACTACGCAGCTTCATTGCC
GGGTGCGCCATTCGGAATGGCGGCCGAGGGAAAGTACTTTGACCCTGCAG
GGTTGGCTACGAATCAGGATCCCGAGACAATCAAGAAGTGGCGCGAGGCT
GAGTTGAAGCACGGCCGCGTGTCGATGTTGGCTGCGGTGGGTATACTTGT
CAGCGAGGTATTCCACCCGCTGTTCATGGGCCCCGCGTACATCGGCCCTG
CGGTGGAGCACGCTCAGGGAAAGTACTTTGACCCTGCAGGGTTGGCTACG
AATCAGGATCCCGAGACAATCAAGAAGTGGCGCGAGGCTGAGTTGAAGCA
CGGCCGCGTGTCGATGTTGGCTGCGGTGGGTATACTTGTCAGCGAGGTAT
TCCACCCGCTGTTCATGGGCCCCGCGTACATCGGCCCTGCGGTGGAGCAC
GCTCAGCAAATCGCGACGGTCTACCCCCTGTTCTGGGTAGCTTCGCTGGG
CATGATCGCGTTCATTGAGGGACAGACGATCAAGGACGCGTGGGGCACCG
TCAGCCCCGTGACTGGTGTGGGAAACTTGAAAACCGAGTACTACCCGGGC
AAATCGCGACGGTCTACCCCCTGTTCTGGGTAGCTTCGCTGGGCATGATC
GCGTTCATTGAGGGACAGACGATCAAGGACGCGTGGGGCACCGTCAGCCC
CGTGACTGGTGTGGGAAACTTGAAAACCGAGTACTACCCGGGAGACCTTG
GGTTCGACCCGCTGGGTCTCGCGCCCAAAGACGGCGAGGACTTCCGGTTG
ATCCAGTCTCAGGAGCTCGACCTCGGGCGGTACGCCATGATTGGCGTGTT
GGGGATGATTGTTCAGGAGGTTGTAGACGGGAAGGGTATTCTGGAGCACA
TCGTCTCGCGGATTTAGAGACCTTGGGTTCGACCCGCTGGGTCTCGCGCC
CAAAGACGGCGAGGACTTCCGGTTGATCCAGTCTCAGGAGCTCGACCTCG
GGCGGTACGCCATGATTGGCGTGTTGGGGATGATTGTTCAGGAGGTTGTA
GACGGGAAGGGTATTCTGGAGCACATCGTCTCGCGGATTTAG
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