prot_E-siliculosus-1a_F_contig1480.2807.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig1480.2807.1
Unique Nameprot_E-siliculosus-1a_F_contig1480.2807.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length88
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1480.2807.1 vs. uniprot
Match: A0A6H5JDJ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDJ5_9PHAE)

HSP 1 Score: 159 bits (403), Expect = 4.840e-44
Identity = 82/87 (94.25%), Postives = 83/87 (95.40%), Query Frame = 0 
Query:    1 MEGGGGPHGPQDAGRASGGLVLLCLLVAAAVGAVGFSLGKYSRWACGRGARYEGLAELPRSKGRWLAAFLCSGFVAGATCSVLLLRS 87
            MEGG GPHG QDAGRASGGLVLLCLLVAAAVGAVGFSLGKYSRWACGRGARYEGLA LPRSKG W+AAFLCSGFVAGATCSVLLLRS
Sbjct:  574 MEGGRGPHGLQDAGRASGGLVLLCLLVAAAVGAVGFSLGKYSRWACGRGARYEGLAGLPRSKGWWVAAFLCSGFVAGATCSVLLLRS 660
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BLAST of mRNA_E-siliculosus-1a_F_contig1480.2807.1 vs. uniprot
Match: D8LGS1_ECTSI (Beta-glucosidase, family GH1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGS1_ECTSI)

HSP 1 Score: 156 bits (395), Expect = 5.110e-43
Identity = 81/87 (93.10%), Postives = 83/87 (95.40%), Query Frame = 0 
Query:    1 MEGGGGPHGPQDAGRASGGLVLLCLLVAAAVGAVGFSLGKYSRWACGRGARYEGLAELPRSKGRWLAAFLCSGFVAGATCSVLLLRS 87
            +EGG GPHG QDAGRASGGLVLLCLLVAAAVGAVGFSLGKYSRWA GRGARYEGLAELPRSKG W+AAFLCSGFVAGATCSVLLLRS
Sbjct:  545 IEGGEGPHGLQDAGRASGGLVLLCLLVAAAVGAVGFSLGKYSRWAWGRGARYEGLAELPRSKGWWVAAFLCSGFVAGATCSVLLLRS 631
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1480.2807.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JDJ5_9PHAE4.840e-4494.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LGS1_ECTSI5.110e-4393.10Beta-glucosidase, family GH1 n=1 Tax=Ectocarpus si... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 20..38
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 65..85
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..19
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 86..87
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 39..64
NoneNo IPR availableTMHMMTMhelixcoord: 63..85
NoneNo IPR availableTMHMMTMhelixcoord: 20..42

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1480contigE-siliculosus-1a_F_contig1480:1388..1651 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1480.2807.1mRNA_E-siliculosus-1a_F_contig1480.2807.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig1480 1377..3755 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig1480.2807.1 ID=prot_E-siliculosus-1a_F_contig1480.2807.1|Name=mRNA_E-siliculosus-1a_F_contig1480.2807.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=88bp
MEGGGGPHGPQDAGRASGGLVLLCLLVAAAVGAVGFSLGKYSRWACGRGA
RYEGLAELPRSKGRWLAAFLCSGFVAGATCSVLLLRS*
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