mRNA_E-siliculosus-1a_F_contig1480.2807.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1480.2807.1
Unique NamemRNA_E-siliculosus-1a_F_contig1480.2807.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1480.2807.1 vs. uniprot
Match: A0A6H5JDJ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDJ5_9PHAE)

HSP 1 Score: 161 bits (408), Expect = 6.290e-38
Identity = 84/89 (94.38%), Postives = 85/89 (95.51%), Query Frame = 3 
Query:    6 QQMEGGGGPHGPQDAGRASGGLVLLCLLVAAAVGAVGFSLGKYSRWACGRGARYEGLAELPRSKGRWLAAFLCSGFVAGATCSVLLLRS 272
            QQMEGG GPHG QDAGRASGGLVLLCLLVAAAVGAVGFSLGKYSRWACGRGARYEGLA LPRSKG W+AAFLCSGFVAGATCSVLLLRS
Sbjct:  572 QQMEGGRGPHGLQDAGRASGGLVLLCLLVAAAVGAVGFSLGKYSRWACGRGARYEGLAGLPRSKGWWVAAFLCSGFVAGATCSVLLLRS 660
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1480.2807.1 vs. uniprot
Match: D8LGS1_ECTSI (Beta-glucosidase, family GH1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGS1_ECTSI)

HSP 1 Score: 159 bits (403), Expect = 2.070e-37
Identity = 84/90 (93.33%), Postives = 86/90 (95.56%), Query Frame = 3 
Query:    3 GQQMEGGGGPHGPQDAGRASGGLVLLCLLVAAAVGAVGFSLGKYSRWACGRGARYEGLAELPRSKGRWLAAFLCSGFVAGATCSVLLLRS 272
            GQQ+EGG GPHG QDAGRASGGLVLLCLLVAAAVGAVGFSLGKYSRWA GRGARYEGLAELPRSKG W+AAFLCSGFVAGATCSVLLLRS
Sbjct:  542 GQQIEGGEGPHGLQDAGRASGGLVLLCLLVAAAVGAVGFSLGKYSRWAWGRGARYEGLAELPRSKGWWVAAFLCSGFVAGATCSVLLLRS 631
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1480.2807.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JDJ5_9PHAE6.290e-3894.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LGS1_ECTSI2.070e-3793.33Beta-glucosidase, family GH1 n=1 Tax=Ectocarpus si... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1480contigE-siliculosus-1a_F_contig1480:1377..3755 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size264
Model size2379
Exons1
Ec32 orthologEc-07_005240.1
Ec32 ortholog descriptionBeta-glucosidase, family GH1
Hectar predicted targeting categorysignal peptide
BRITEko00000,ko00001,ko01000,ko03051
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
CAZyGH1
COG Functional cat.G
EC3.2.1.21
EggNOG OGsCOG2723@1,KOG0626@2759
EggNOG free text desc.beta-glucosidase activity
KEGG Pathwayko00460,ko00500,ko00940,ko01100,ko01110,ko03050,map00460,map00500,map00940,map01100,map01110,map03050
KEGG ReactionR00026,R02558,R02887,R02985,R03527,R04949,R04998,R10035,R10039,R10040
KEGG koko:K01188,ko:K06699
KEGG rclassRC00049,RC00059,RC00171,RC00262,RC00397,RC00451,RC00714,RC00746,RC01248
Seed eggNOG ortholog2880.D8LGS1
Seed ortholog evalue2.1e-36
Seed ortholog score157.9
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1480.2807.1prot_E-siliculosus-1a_F_contig1480.2807.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1480 1388..1651 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927994.1971931-UTR-E-siliculosus-1a_F_contig1480:1376..13871622927994.1971931-UTR-E-siliculosus-1a_F_contig1480:1376..1387Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1480 1377..1387 +
1696318765.5146444-UTR-E-siliculosus-1a_F_contig1480:1376..13871696318765.5146444-UTR-E-siliculosus-1a_F_contig1480:1376..1387Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1480 1377..1387 +
1622927994.2281666-UTR-E-siliculosus-1a_F_contig1480:1651..37551622927994.2281666-UTR-E-siliculosus-1a_F_contig1480:1651..3755Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1480 1652..3755 +
1696318765.5364485-UTR-E-siliculosus-1a_F_contig1480:1651..37551696318765.5364485-UTR-E-siliculosus-1a_F_contig1480:1651..3755Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1480 1652..3755 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927994.2128048-CDS-E-siliculosus-1a_F_contig1480:1387..16511622927994.2128048-CDS-E-siliculosus-1a_F_contig1480:1387..1651Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1480 1388..1651 +
1696318765.5270548-CDS-E-siliculosus-1a_F_contig1480:1387..16511696318765.5270548-CDS-E-siliculosus-1a_F_contig1480:1387..1651Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1480 1388..1651 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1480.2807.1

>prot_E-siliculosus-1a_F_contig1480.2807.1 ID=prot_E-siliculosus-1a_F_contig1480.2807.1|Name=mRNA_E-siliculosus-1a_F_contig1480.2807.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=88bp
MEGGGGPHGPQDAGRASGGLVLLCLLVAAAVGAVGFSLGKYSRWACGRGA
RYEGLAELPRSKGRWLAAFLCSGFVAGATCSVLLLRS*
back to top

mRNA from alignment at E-siliculosus-1a_F_contig1480:1377..3755+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1480.2807.1 ID=mRNA_E-siliculosus-1a_F_contig1480.2807.1|Name=mRNA_E-siliculosus-1a_F_contig1480.2807.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2379bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1480:1377..3755+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGGGCCAGCAGATGGAAGGAGGGGGGGGTCCCCACGGGCCACAGGACGCC
GGCCGGGCGTCGGGAGGGCTGGTTCTGCTGTGCTTGCTGGTGGCGGCGGC
GGTAGGGGCGGTCGGGTTTAGCCTAGGGAAGTACAGCCGGTGGGCTTGCG
GACGGGGCGCGCGGTACGAGGGCTTGGCGGAGCTCCCGCGGTCGAAGGGT
CGGTGGTTGGCGGCGTTCCTGTGCTCGGGCTTCGTGGCGGGAGCCACCTG
CTCCGTCTTGCTTCTCCGGTCGTGAGACGACGGCTGCTGCGCGAGCGAGC
AACGTACGTTCACTGCTGCTGTAGCGGCAGAGTGCATATGCCGGGGTAGG
CGTCTCTGGAGAGTGGTGCCGTCGTTGACTTCCGTGCTTTGTGCGCGGTG
GAGTCGATGTAGGTGTCCCCGTGTACAGCTGTCACGGCGTGGCCTGTTCC
CGGTGCAAGCTCGATCCAGGGGTGGATAGAGTCGCGCGGATGTTACATTA
CAGCGGTTCCCCCCGCGGCCCGAATCCAGAGAACGCCACCAATGCTAGGT
TGGTAGATCTTTGTATGCCGTGCGCGACGGTCGTGATTTTGTTCCGTGGT
GGCGCGACCAATAGCCTCGGCGTGTATTGGGGGCGCACCTTTTAGTGAAG
GGGCCTCTCTCCCGTCCGGGTGTAGGACCCCCTTTTTGGTGTCTGGCAGT
CCGCTGCATGATGATGCAGAGATTGAGCCTCAGATGAACCTTTTTGGTGT
CTCGCAGTCCATTGCGTGATGATGCAGAGATTGAGCCTTAGTGAACTAAC
TCTCCCGAGCCCCTGAGTGAGTGTGAGGGGTCGTTTGATATCTCGACTGC
GGGGACGGTATTGCGAGGGCGAACTTGGACGGCTACTTACGTGAACCGCC
TGCCCGCGAAATGTTCCCGTCGCATGTTGTTTTTGTTTCAGGCGTTGGAC
ATGACGTCCTTTCGGTCTTGTGTGATATTTGGTACTGTCTGCTTGGACGT
TATTTCCTTGTTTAGGTTTCGTTTTTGTCGATGCAGATCCGGCGGGCTGT
TCTATGGAGCGGGATGTTTGTCCATCGTGGTGGTGTGGGCATGCTAAGTC
AAGGTTTTGTGCAGAAAATGTCGCTGGCATTAGCTGAGCGGGTCGTCGGG
GTTTTTGTGCGCGCCACGAAATTTGCCGAACCATCGTCATCGTCGCGTTA
GCATGGTTTTGTGTGTCGGCGAAGAACGGGTGAGCGGTGTGTTGTGTAGA
GACAGATCATTTGCTCTCTCATCAGCTGTGGGGTATGGAGTCGGCTCGCA
ATGCATGTGGTTGAATGGTTGCGCGCGCTGCATATTTTGTGCTCGGTGCC
TGTTTTGTCTCGCTGGCTGCCTACTACGGCAACAGTGCTCTCGCGAGACA
TTCTCGACCGCGCTTCATGGCATCACCTCCCACAAGGGTCGGTGTATCCA
CTCCTCATGAATAGGAAGGGAAATGAGTGTCCACTAGCGATTGGCACTCA
TTTCCAAACTCTTCACGATAAGTTTGTTGGAGAACAACTGAGCGAAAATG
GTCAATTATGAAGTATATATTTCTGGATTTATGTTTAGCCGCTCTTCGGG
CCGAGCGAACTCGGATGTTTTTGGGCTGCCATAACCTTAGCAGCAGCAGC
AGTGTCCTTTCCGACATTTTGTTGCCGCGCGTACCTTTCTTTCAGGTTTC
CTCTCTGCTTTCCATGCACGAGACGATATGCCCGATGGTATAATCTGGTA
TCTGTAGAGGTACAGCACTTGCCTTTTTTGAGTTGAGGTCTGAGCCTTTG
GGCCTCCACCTTTATGTATTACTGTGTTCCTTTTTTGCGACAATAAAAGG
AGCGTGGTCGGCGACCGGTGTTTTTCTTAATGCTCGGTTTGGTTCCGCTT
GGCCTCGCGTGCCGGAAGCAGTTCATTGGCTGTGTGTGGTCGATCTGCTT
TGTTCGGTCACCTACTGCGAGGTCTTTTGACTGTTTGAGGACTTTCTTTT
GTCTTGTTCTTCGCGTTTGTTTATGGGTGGTAATTTTTCTGGATCCTTAA
CACGTGTAGTTCAAAGAGGATGTTGCCCCTATTTTCTTCTCTTTTTTCTT
CCTTCTTTTTCATTTTTTTGCAGTCTATGGTTACCTCACATAGCGGATAG
AGGCGGGCAGAGGGTTCTAGACTAAATACATATCTGTCGTTGATTTGGTG
TCTATTGACTTGCGGACCCTCCGGGTCCATTATTTTCTAGTATACCTTTG
TTGGATAAGTTAGCCTGTGACCATGGGAATCGACCGCGTCGAGTGTTGGA
CTAGTACGGACGATAGAAGGTACTGGAAGAGAGATCGGAACGGTTTTAAT
GTGAAGACAACAACAACAACAGCAGCAGC
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1480:1377..3755+

>mRNA_E-siliculosus-1a_F_contig1480.2807.1 ID=mRNA_E-siliculosus-1a_F_contig1480.2807.1|Name=mRNA_E-siliculosus-1a_F_contig1480.2807.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=528bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1480:1377..3755+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGAAGGAGGGGGGGGTCCCCACGGGCCACAGGACGCCGGCCGGGCGTC
GGGAGGGCTGGTTCTGCTGTGCTTGCTGGTGGCGGCGGCGGTAGGGGCGG
TCGGGTTTAGCCTAGGGAAGTACAGCCGGTGGGCTTGCGGACGGGGCGCG
CGGTACGAGGGCTTGGCGGAGCTCCCGCGGTCGAAGGGTCGGTGGTTGGC
GGCGTTCCTGTGCTCGGGCTTCGTGGCGGGAGCCACCTGCTCCGTCTTGC
TTCTCCGGTCGTGAATGGAAGGAGGGGGGGGTCCCCACGGGCCACAGGAC
GCCGGCCGGGCGTCGGGAGGGCTGGTTCTGCTGTGCTTGCTGGTGGCGGC
GGCGGTAGGGGCGGTCGGGTTTAGCCTAGGGAAGTACAGCCGGTGGGCTT
GCGGACGGGGCGCGCGGTACGAGGGCTTGGCGGAGCTCCCGCGGTCGAAG
GGTCGGTGGTTGGCGGCGTTCCTGTGCTCGGGCTTCGTGGCGGGAGCCAC
CTGCTCCGTCTTGCTTCTCCGGTCGTGA
back to top