prot_E-siliculosus-1a_F_contig1477.2786.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig1477.2786.1
Unique Nameprot_E-siliculosus-1a_F_contig1477.2786.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length325
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1477.2786.1 vs. uniprot
Match: A0A6H5K094_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K094_9PHAE)

HSP 1 Score: 365 bits (937), Expect = 1.820e-118
Identity = 238/290 (82.07%), Postives = 239/290 (82.41%), Query Frame = 0 
Query:   38 MEQVFFRLHVRFVTTVTRLLSPKTRRLLEYVTLANAFVLVTSLAWLHTRFVNPKGRQGSAVSCLPAALEKAGVDPAQLHVLQIHIRQPPDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEQQVSDSRRHSGGATVDAGLEISGLGGGESGDGSATCT--SAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLPPRLDSPPQSPEIFYSMKLVTGKDAVGTLSGPGTLGIERCVVKGGDGVDGNNPAGXXXXXXXICGAVVEEKRPTLVQTLMDAFSWGGRKGET 325
            MEQVFFRLHVRFVTTVTRLLSPKTRRLLEYVTLANAF+LVTSLAWLHTRFVNPKG QGSAVSCLPAALEKAGVDPAQLHVLQIHIRQPPDDXXXXXXXXXX                      AEQQVSDSRRHSGGA  DAGL ISGLGGGESG  SAT T  SA                XXXXXXXXXXXXX LLPPRLDSPP SPEIFYSMKLVTGKDAVGTLSGPGTLGIERCVVKGGDGVDGNNPAGXXXXXXXICGAVVEEKRP LVQTLMDAFSWGG KGET
Sbjct:    1 MEQVFFRLHVRFVTTVTRLLSPKTRRLLEYVTLANAFLLVTSLAWLHTRFVNPKGSQGSAVSCLPAALEKAGVDPAQLHVLQIHIRQPPDDXXXXXXXXXXKNLMSFPDGSSRIDDSSRSGTNAEQQVSDSRRHSGGAAGDAGLGISGLGGGESGYASATGTAASACTGSGEEEGAAGTMGSXXXXXXXXXXXXXWLLPPRLDSPPLSPEIFYSMKLVTGKDAVGTLSGPGTLGIERCVVKGGDGVDGNNPAGXXXXXXXICGAVVEEKRPALVQTLMDAFSWGG-KGET 289
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BLAST of mRNA_E-siliculosus-1a_F_contig1477.2786.1 vs. uniprot
Match: D8LLK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLK2_ECTSI)

HSP 1 Score: 318 bits (814), Expect = 2.840e-96
Identity = 237/297 (79.80%), Postives = 240/297 (80.81%), Query Frame = 0 
Query:   38 MEQVFFRLHVRFVTTVTRLLSPKTRRLLEYVTLANAFVLVTSLAWLHTRFVNPKGRQGSAVSCLPAALEKAGVDPAQLHVLQIHIRQPPDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEQQVSDSRRHSGG------ATVDAGLEISGLGGGESGDGSATCTSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---LLPPRLDSPPQSPEIFYSMKLVTGKDAVGTLSGPGTLGIERCVVKGGDGVDGNNPAGXXXXXXXICGAVVEEKRPTLVQTLMDAFSWGGRKGET 325
            MEQVFFRLHVRFVTTVTRLLSPKTRRLLEYVTLANAF+LVTSLAWLHTRFVNPKGRQGSAVSCLPAALEKAGVDPAQLHVLQIHIRQPPDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                    A  DAGL +SGLG       S T T+A                     XXXXXXXXX   LLPPRLDSPPQSPEIFYSMKLVTGKDAVGTLSGPGTLGIERCVVKGGDGVDGNNPAGXXXXXXXICGAVVEEKRPTLVQTLMDAFSWGG KGET
Sbjct:    1 MEQVFFRLHVRFVTTVTRLLSPKTRRLLEYVTLANAFLLVTSLAWLHTRFVNPKGRQGSAVSCLPAALEKAGVDPAQLHVLQIHIRQPPDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAADAGLGMSGLGXXXXXXXSVTGTTAATACTGSGEEVGAAGAIGSESXXXXXXXXXXXXLLPPRLDSPPQSPEIFYSMKLVTGKDAVGTLSGPGTLGIERCVVKGGDGVDGNNPAGXXXXXXXICGAVVEEKRPTLVQTLMDAFSWGG-KGET 296
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BLAST of mRNA_E-siliculosus-1a_F_contig1477.2786.1 vs. uniprot
Match: A0A7S2WVH7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WVH7_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 7.560e-5
Identity = 29/54 (53.70%), Postives = 37/54 (68.52%), Query Frame = 0 
Query:   38 MEQVFFRLHVRFVTTVTRLLSPKTRRLLEYVTLANAFVLVTSLAWLHTRFVNPK 91
            MEQVFFRLHVR V T+TR  SP  RR++EY  LA +  L + +  LHTR + P+
Sbjct:    1 MEQVFFRLHVRCVRTITRACSPTFRRVVEYGLLALSVGLCSLVVALHTRHIAPR 54
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1477.2786.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K094_9PHAE1.820e-11882.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLK2_ECTSI2.840e-9679.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2WVH7_9STRA7.560e-553.70Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019144MembralinPFAMPF09746Membralincoord: 37..89
e-value: 1.7E-5
score: 24.1
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..63
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 84..325
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 64..83

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1477contigE-siliculosus-1a_F_contig1477:27779..30304 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1477.2786.1mRNA_E-siliculosus-1a_F_contig1477.2786.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig1477 27779..30305 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig1477.2786.1 ID=prot_E-siliculosus-1a_F_contig1477.2786.1|Name=mRNA_E-siliculosus-1a_F_contig1477.2786.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=325bp
AGSLRPVQEPEEEASVSALSHKGSCYDFTWPASLSREMEQVFFRLHVRFV
TTVTRLLSPKTRRLLEYVTLANAFVLVTSLAWLHTRFVNPKGRQGSAVSC
LPAALEKAGVDPAQLHVLQIHIRQPPDDWGGGGGGGRRKNLMSFPGGSSR
IDDSSSSGTNAEQQVSDSRRHSGGATVDAGLEISGLGGGESGDGSATCTS
AATACTGGGEEEGAAGAMRSESSSSSGDGGGLLPPRLDSPPQSPEIFYSM
KLVTGKDAVGTLSGPGTLGIERCVVKGGDGVDGNNPAGGGGGGGGICGAV
VEEKRPTLVQTLMDAFSWGGRKGET
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019144Membralin