mRNA_E-siliculosus-1a_F_contig1477.2786.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1477.2786.1 vs. uniprot
Match: A0A6H5K094_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K094_9PHAE) HSP 1 Score: 365 bits (937), Expect = 1.820e-118 Identity = 238/290 (82.07%), Postives = 239/290 (82.41%), Query Frame = 1
Query: 112 MEQVFFRLHVRFVTTVTRLLSPKTRRLLEYVTLANAFVLVTSLAWLHTRFVNPKGRQGSAVSCLPAALEKAGVDPAQLHVLQIHIRQPPDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEQQVSDSRRHSGGATVDAGLEISGLGGGESGDGSATCT--SAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLPPRLDSPPQSPEIFYSMKLVTGKDAVGTLSGPGTLGIERCVVKGGDGVDGNNPAGXXXXXXXICGAVVEEKRPTLVQTLMDAFSWGGRKGET 975
MEQVFFRLHVRFVTTVTRLLSPKTRRLLEYVTLANAF+LVTSLAWLHTRFVNPKG QGSAVSCLPAALEKAGVDPAQLHVLQIHIRQPPDDXXXXXXXXXX AEQQVSDSRRHSGGA DAGL ISGLGGGESG SAT T SA XXXXXXXXXXXXX LLPPRLDSPP SPEIFYSMKLVTGKDAVGTLSGPGTLGIERCVVKGGDGVDGNNPAGXXXXXXXICGAVVEEKRP LVQTLMDAFSWGG KGET
Sbjct: 1 MEQVFFRLHVRFVTTVTRLLSPKTRRLLEYVTLANAFLLVTSLAWLHTRFVNPKGSQGSAVSCLPAALEKAGVDPAQLHVLQIHIRQPPDDXXXXXXXXXXKNLMSFPDGSSRIDDSSRSGTNAEQQVSDSRRHSGGAAGDAGLGISGLGGGESGYASATGTAASACTGSGEEEGAAGTMGSXXXXXXXXXXXXXWLLPPRLDSPPLSPEIFYSMKLVTGKDAVGTLSGPGTLGIERCVVKGGDGVDGNNPAGXXXXXXXICGAVVEEKRPALVQTLMDAFSWGG-KGET 289
BLAST of mRNA_E-siliculosus-1a_F_contig1477.2786.1 vs. uniprot
Match: D8LLK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLK2_ECTSI) HSP 1 Score: 318 bits (814), Expect = 2.840e-96 Identity = 237/297 (79.80%), Postives = 240/297 (80.81%), Query Frame = 1
Query: 112 MEQVFFRLHVRFVTTVTRLLSPKTRRLLEYVTLANAFVLVTSLAWLHTRFVNPKGRQGSAVSCLPAALEKAGVDPAQLHVLQIHIRQPPDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEQQVSDSRRHSGG------ATVDAGLEISGLGGGESGDGSATCTSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---LLPPRLDSPPQSPEIFYSMKLVTGKDAVGTLSGPGTLGIERCVVKGGDGVDGNNPAGXXXXXXXICGAVVEEKRPTLVQTLMDAFSWGGRKGET 975
MEQVFFRLHVRFVTTVTRLLSPKTRRLLEYVTLANAF+LVTSLAWLHTRFVNPKGRQGSAVSCLPAALEKAGVDPAQLHVLQIHIRQPPDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX A DAGL +SGLG S T T+A XXXXXXXXX LLPPRLDSPPQSPEIFYSMKLVTGKDAVGTLSGPGTLGIERCVVKGGDGVDGNNPAGXXXXXXXICGAVVEEKRPTLVQTLMDAFSWGG KGET
Sbjct: 1 MEQVFFRLHVRFVTTVTRLLSPKTRRLLEYVTLANAFLLVTSLAWLHTRFVNPKGRQGSAVSCLPAALEKAGVDPAQLHVLQIHIRQPPDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAADAGLGMSGLGXXXXXXXSVTGTTAATACTGSGEEVGAAGAIGSESXXXXXXXXXXXXLLPPRLDSPPQSPEIFYSMKLVTGKDAVGTLSGPGTLGIERCVVKGGDGVDGNNPAGXXXXXXXICGAVVEEKRPTLVQTLMDAFSWGG-KGET 296
BLAST of mRNA_E-siliculosus-1a_F_contig1477.2786.1 vs. uniprot
Match: A0A7S2WVH7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WVH7_9STRA) HSP 1 Score: 53.9 bits (128), Expect = 7.560e-5 Identity = 29/54 (53.70%), Postives = 37/54 (68.52%), Query Frame = 1
Query: 112 MEQVFFRLHVRFVTTVTRLLSPKTRRLLEYVTLANAFVLVTSLAWLHTRFVNPK 273
MEQVFFRLHVR V T+TR SP RR++EY LA + L + + LHTR + P+
Sbjct: 1 MEQVFFRLHVRCVRTITRACSPTFRRVVEYGLLALSVGLCSLVVALHTRHIAPR 54 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1477.2786.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1477.2786.1 >prot_E-siliculosus-1a_F_contig1477.2786.1 ID=prot_E-siliculosus-1a_F_contig1477.2786.1|Name=mRNA_E-siliculosus-1a_F_contig1477.2786.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=325bp AGSLRPVQEPEEEASVSALSHKGSCYDFTWPASLSREMEQVFFRLHVRFVback to top mRNA from alignment at E-siliculosus-1a_F_contig1477:27779..30305+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1477.2786.1 ID=mRNA_E-siliculosus-1a_F_contig1477.2786.1|Name=mRNA_E-siliculosus-1a_F_contig1477.2786.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2527bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1477:27779..30305+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1477:27779..30305+ >mRNA_E-siliculosus-1a_F_contig1477.2786.1 ID=mRNA_E-siliculosus-1a_F_contig1477.2786.1|Name=mRNA_E-siliculosus-1a_F_contig1477.2786.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1950bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1477:27779..30305+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |