prot_E-siliculosus-1a_F_contig14435.2594.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig14435.2594.1
Unique Nameprot_E-siliculosus-1a_F_contig14435.2594.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length206
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig14435.2594.1 vs. uniprot
Match: O78798_PYLLI (DNA-directed RNA polymerase n=1 Tax=Pylaiella littoralis TaxID=2885 RepID=O78798_PYLLI)

HSP 1 Score: 125 bits (313), Expect = 1.520e-29
Identity = 85/210 (40.48%), Postives = 130/210 (61.90%), Query Frame = 0 
Query:    1 DLSLKDKQKEIEKKIQSEIQKSPLPFLANLNNKTIDESKNELYNYASIILEKSRLPKPMETFMNPELLTAITLRVLINLFHTISEKSSKISRISLIRAIADLILRQLAWEQEQLNFNSKEKEKTYIGLEKTYNKYQQELSDKTDTTSKTLAAKIVECLSKANITIEHI-ETKTFKNS---IKTTKYFQLSESWAQIAAQAIDSRTKLPMI 206
            + S K  Q  +E++++ ++  +PLP+L  +NN  I ESK  L + A  ILEKSRLP+ ++TFM  ELLTAI+L +L  LFH  S + S+IS+ +LIRAI D  +RQL+ ++++     +E +     L+K+  K +++   KTDT ++TLAAKIV  LS   I I  I +   +  S   I+TT Y  LS+ W ++A Q  ++ T LPM+
Sbjct:   37 ETSAKSAQYFLERELEHKLTTNPLPYLGQVNNNRIKESKAHLNDAAKKILEKSRLPEELKTFMTSELLTAISLTILTKLFHKASAQDSRISQTALIRAILDHFVRQLSLQRDK-EIYKEENDGEKTKLKKSSKKKEEQKILKTDTAARTLAAKIVGVLSNPEIDICRIYQENPYSKSPSRIRTTNYLCLSDEWVEVAKQYENTFTCLPML 245
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig14435.2594.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
O78798_PYLLI1.520e-2940.48DNA-directed RNA polymerase n=1 Tax=Pylaiella litt... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 118..138

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig14435contigE-siliculosus-1a_F_contig14435:208..825 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig14435.2594.1mRNA_E-siliculosus-1a_F_contig14435.2594.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig14435 208..825 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig14435.2594.1 ID=prot_E-siliculosus-1a_F_contig14435.2594.1|Name=mRNA_E-siliculosus-1a_F_contig14435.2594.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=206bp
DLSLKDKQKEIEKKIQSEIQKSPLPFLANLNNKTIDESKNELYNYASIIL
EKSRLPKPMETFMNPELLTAITLRVLINLFHTISEKSSKISRISLIRAIA
DLILRQLAWEQEQLNFNSKEKEKTYIGLEKTYNKYQQELSDKTDTTSKTL
AAKIVECLSKANITIEHIETKTFKNSIKTTKYFQLSESWAQIAAQAIDSR
TKLPMI
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