mRNA_E-siliculosus-1a_F_contig14435.2594.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig14435.2594.1
Unique NamemRNA_E-siliculosus-1a_F_contig14435.2594.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig14435.2594.1 vs. uniprot
Match: O78798_PYLLI (DNA-directed RNA polymerase n=1 Tax=Pylaiella littoralis TaxID=2885 RepID=O78798_PYLLI)

HSP 1 Score: 125 bits (313), Expect = 1.520e-29
Identity = 85/210 (40.48%), Postives = 130/210 (61.90%), Query Frame = 1 
Query:    1 DLSLKDKQKEIEKKIQSEIQKSPLPFLANLNNKTIDESKNELYNYASIILEKSRLPKPMETFMNPELLTAITLRVLINLFHTISEKSSKISRISLIRAIADLILRQLAWEQEQLNFNSKEKEKTYIGLEKTYNKYQQELSDKTDTTSKTLAAKIVECLSKANITIEHI-ETKTFKNS---IKTTKYFQLSESWAQIAAQAIDSRTKLPMI 618
            + S K  Q  +E++++ ++  +PLP+L  +NN  I ESK  L + A  ILEKSRLP+ ++TFM  ELLTAI+L +L  LFH  S + S+IS+ +LIRAI D  +RQL+ ++++     +E +     L+K+  K +++   KTDT ++TLAAKIV  LS   I I  I +   +  S   I+TT Y  LS+ W ++A Q  ++ T LPM+
Sbjct:   37 ETSAKSAQYFLERELEHKLTTNPLPYLGQVNNNRIKESKAHLNDAAKKILEKSRLPEELKTFMTSELLTAISLTILTKLFHKASAQDSRISQTALIRAILDHFVRQLSLQRDK-EIYKEENDGEKTKLKKSSKKKEEQKILKTDTAARTLAAKIVGVLSNPEIDICRIYQENPYSKSPSRIRTTNYLCLSDEWVEVAKQYENTFTCLPML 245
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig14435.2594.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
O78798_PYLLI1.520e-2940.48DNA-directed RNA polymerase n=1 Tax=Pylaiella litt... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig14435contigE-siliculosus-1a_F_contig14435:208..825 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size618
Model size618
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927954.397226-CDS-E-siliculosus-1a_F_contig14435:207..8251622927954.397226-CDS-E-siliculosus-1a_F_contig14435:207..825Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14435 208..825 +
1696318751.8105195-CDS-E-siliculosus-1a_F_contig14435:207..8251696318751.8105195-CDS-E-siliculosus-1a_F_contig14435:207..825Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig14435 208..825 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig14435.2594.1prot_E-siliculosus-1a_F_contig14435.2594.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig14435 208..825 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig14435.2594.1

>prot_E-siliculosus-1a_F_contig14435.2594.1 ID=prot_E-siliculosus-1a_F_contig14435.2594.1|Name=mRNA_E-siliculosus-1a_F_contig14435.2594.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=206bp
DLSLKDKQKEIEKKIQSEIQKSPLPFLANLNNKTIDESKNELYNYASIIL
EKSRLPKPMETFMNPELLTAITLRVLINLFHTISEKSSKISRISLIRAIA
DLILRQLAWEQEQLNFNSKEKEKTYIGLEKTYNKYQQELSDKTDTTSKTL
AAKIVECLSKANITIEHIETKTFKNSIKTTKYFQLSESWAQIAAQAIDSR
TKLPMI
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mRNA from alignment at E-siliculosus-1a_F_contig14435:208..825+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig14435.2594.1 ID=mRNA_E-siliculosus-1a_F_contig14435.2594.1|Name=mRNA_E-siliculosus-1a_F_contig14435.2594.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=618bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14435:208..825+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GATCTAAGCCTAAAAGACAAACAAAAAGAAATAGAAAAAAAGATCCAAAG
CGAGATACAAAAATCTCCTTTACCTTTCCTTGCTAACCTAAACAATAAAA
CTATTGATGAGTCTAAAAACGAGTTATACAACTATGCTTCAATAATCTTA
GAAAAATCCAGATTACCAAAACCTATGGAGACTTTTATGAATCCTGAGTT
ACTAACTGCCATAACGCTTAGGGTATTAATTAATCTTTTTCATACTATTT
CCGAAAAAAGCTCTAAGATATCTCGTATATCATTAATACGTGCTATTGCA
GATTTAATCTTACGCCAACTGGCCTGGGAACAAGAACAACTCAACTTTAA
CTCTAAAGAAAAAGAGAAAACATACATAGGTTTAGAAAAAACTTACAATA
AATACCAACAAGAGCTTTCAGATAAAACCGATACAACCTCCAAAACTTTA
GCAGCAAAGATAGTAGAATGCCTGTCTAAGGCTAACATTACCATAGAACA
TATCGAAACAAAAACCTTTAAGAATAGTATCAAAACTACAAAATACTTTC
AATTAAGCGAAAGTTGGGCACAAATAGCAGCCCAAGCAATCGACTCACGA
ACTAAACTCCCAATGATC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig14435:208..825+

>mRNA_E-siliculosus-1a_F_contig14435.2594.1 ID=mRNA_E-siliculosus-1a_F_contig14435.2594.1|Name=mRNA_E-siliculosus-1a_F_contig14435.2594.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1236bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig14435:208..825+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GATCTAAGCCTAAAAGACAAACAAAAAGAAATAGAAAAAAAGATCCAAAG
CGAGATACAAAAATCTCCTTTACCTTTCCTTGCTAACCTAAACAATAAAA
CTATTGATGAGTCTAAAAACGAGTTATACAACTATGCTTCAATAATCTTA
GAAAAATCCAGATTACCAAAACCTATGGAGACTTTTATGAATCCTGAGTT
ACTAACTGCCATAACGCTTAGGGTATTAATTAATCTTTTTCATACTATTT
CCGAAAAAAGCTCTAAGATATCTCGTATATCATTAATACGTGCTATTGCA
GATTTAATCTTACGCCAACTGGCCTGGGAACAAGAACAACTCAACTTTAA
CTCTAAAGAAAAAGAGAAAACATACATAGGTTTAGAAAAAACTTACAATA
AATACCAACAAGAGCTTTCAGATAAAACCGATACAACCTCCAAAACTTTA
GCAGCAAAGATAGTAGAATGCCTGTCTAAGGCTAACATTACCATAGAACA
TATCGAAACAAAAACCTTTAAGAATAGTATCAAAACTACAAAATACTTTC
AATTAAGCGAAAGTTGGGCACAAATAGCAGCCCAAGCAATCGACTCACGA
ACTAAACTCCCAATGATCGATCTAAGCCTAAAAGACAAACAAAAAGAAAT
AGAAAAAAAGATCCAAAGCGAGATACAAAAATCTCCTTTACCTTTCCTTG
CTAACCTAAACAATAAAACTATTGATGAGTCTAAAAACGAGTTATACAAC
TATGCTTCAATAATCTTAGAAAAATCCAGATTACCAAAACCTATGGAGAC
TTTTATGAATCCTGAGTTACTAACTGCCATAACGCTTAGGGTATTAATTA
ATCTTTTTCATACTATTTCCGAAAAAAGCTCTAAGATATCTCGTATATCA
TTAATACGTGCTATTGCAGATTTAATCTTACGCCAACTGGCCTGGGAACA
AGAACAACTCAACTTTAACTCTAAAGAAAAAGAGAAAACATACATAGGTT
TAGAAAAAACTTACAATAAATACCAACAAGAGCTTTCAGATAAAACCGAT
ACAACCTCCAAAACTTTAGCAGCAAAGATAGTAGAATGCCTGTCTAAGGC
TAACATTACCATAGAACATATCGAAACAAAAACCTTTAAGAATAGTATCA
AAACTACAAAATACTTTCAATTAAGCGAAAGTTGGGCACAAATAGCAGCC
CAAGCAATCGACTCACGAACTAAACTCCCAATGATC
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