prot_E-siliculosus-1a_F_contig143.2532.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig143.2532.1
Unique Nameprot_E-siliculosus-1a_F_contig143.2532.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length1327
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig143.2532.1 vs. uniprot
Match: D8LQ94_ECTSI (Rab-GAP TBC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ94_ECTSI)

HSP 1 Score: 1888 bits (4891), Expect = 0.000e+0
Identity = 1115/1331 (83.77%), Postives = 1126/1331 (84.60%), Query Frame = 0
Query:    1 MRSVRPDAQPADSAGLGGRGGDSSPESFPAGHQSRLAVPRNWRASMSRRRSEGAAGSGSGINSGITRGGSGRKEQQQSSSHLEKDGEWFGDARGVAGSASEKVLGAAVQDQEQDSPAMSLLCSITKASANAVPELCSPSSLTGDAAGPRQSRLRQRGGPSRPRFSSVGSAGSGGGAVGGGRGVFAPPSGEYYRLPWYRRPLPSNRRVGVAGGGEATHLKRASSMISAPRAGLRPPPVITSGAGXXXXXXXXXXXXXLNGVATPGGGERTRATEQREEXXXXXXXXXXXXXXXXXXXXDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPANEVPVCFAATESPTERPPLTTPMRSPTSAFEAVADRAGAAAQQAASN----VVSVNAQADVHATPTANSMAADRDESTREEGGSADRSRSGGTAVAAGTEQPRGTSPEKEHAAESEELEKLRAEVARLKREMASMAAXXXXXXXXXXXXXXXXXXXRRPSQRIETSSPVASFSSSHAQEKHPAWQWDATAAEGGESSDADGASRPMPNRLRADNSWMQXXXXXXXXXXXXXXXXXXXXRTERRYHRDSIGVGFSGKSRPGSVLPAPRKDSSNGGERSRGSSEDVGDEVGLLSPPVNGTKIEGPSPASREKEKTAAVLEGRRRDSGADSINGASGAXXXXXXXXDGADRGARGSESAGSDASVRRGXXXXXXXXXXXXXXXQMSVFFPVIAPPDPNADAGGTETAEGAAALASAAATRIGETVTPPGALRAARAARDAVSAKKQLQQQQQLAARHAPVVYAKIPVETVRRRGGVDGNGRVWRWVLAQRTEDQTVRQAVISHGLPRFGRRHIWAAWAAVATPETYKKPKQSSDPAKEGSIVNTIAHDVARTKIVHPLFGSGGQGLAMLKRVLVRCAELGAVKEAGYIQGMNYLAGFILITFADCVLSEREDLKSRSSRNRATSGGSSTCSSNAPADSAAAGDVTEPSDVQPGPANEGGTAVETEGKGGEAEKEAA-VKEPTVAEVAQIENECVQMLQGVIALQGGVLSRDLWGLHANTELVEDLLSRQCPDVMEHLRKVNLELIVLTPRWFICIYAGSMSNQSVVTRIWDLFMWYGRRGPAVLVWVALAVLHGCRQGMFESHGLPATVKAVRRYAEGCKTFDDLVRQAPVGLNQVVAAWEEQGNNRKIALLDGEGALPDRMAAGLVEEMTGEPVYLPPPEVLSPPRHRRSPSGLAPVAATSTAFGIQFPSTPGRPPTPLTSPRSPFPEWAANIFRSSTGGPNEDGGGVPASVDVGSVNGGRGXXXXXXXXXXDNLPPTSPRFSTPSRQRQLRRAASTSWW 1326
            MR+VR DAQPA+S GLGGRGGDSSPESFP GHQSRLAVPRNWRASMSRRRSEGAAGSGSGINSGITRGGSGRKEQQQSSSHLEKDGEWFGDARGVA SASEKVL AAVQDQEQDSPAMSLLCSITKASANAVPELCSPSSLTGDAAGPRQSRLRQRGGPSRPRFSSVGSAGSGGGAVGGGRGV APP G+YYRLPWYRRPLPSNRRVGVAGGGEATHLKRA                                                                                                                                                VADRAGA AQQAAS     VVS NAQA+VHATPTANSMAADRDESTREEGG ADRSRSGGTAVAAGTEQPRGTSPEKEHAAESEELEKLRAEVARLKREMASMAAXXXXXXXXXXXXXXXXXXXRRPSQRIETSSPVASFSSSHAQEKHPAWQWDATAAEGGESSDADGASRPMPNRLRADNSWMQXXXXXXXXXXXXXXXXXXXXRTERRYHRDSIGVGFSG SRPGSVLPAPRKDSSNGGERSRGSSED+GDEVGLLSPPVN  KIEGPSPASREKEKTA VLEGRRRDSGADSINGAS A     XXX       RG             XXXXXXXXXXXXXXXQMSVFFPVIAPPDPNADAGGTETAEGAAALASAAATRIGE+VTPPGALRAARAARDAVSAKKQLQQQQQLAARHAPVVYAKIPVETVRRRGGVDGNGRVWRWVLAQRTEDQTVRQAV+SHGLPRFGRRHIWAAWAAVATPETYKKPKQSSDPAKEGSIVNTIAHDVARTKIVHPLFGSGGQGLAMLKRVLVRCAELGAVKEAGYIQGMNYLAGF+LITFADCVLSEREDLKSRSSRNR TSGGSSTCSSNAPADSAAAGDVTEPSDVQPGPANEG  AVETEG GG AEKEAA VKEPTVAEVAQIENECVQMLQGVIALQGGVLSRDLWGLHANTELVEDLLSRQCPDVMEHLRKVNLELIVLTPRWFICIYAGSMSNQSVVTRIWDLFMWYGRRGPAVLVWVALAVLHGCR+GMFESHGLPATVKAVRRYAEGCKTFD+LVRQAPVGLN+VVAAWEEQGNNRKIALLDGEGALPDRMAAGLVEEMTGEPVYLPPPEVLSPPRHRRSPSGLAPVAATSTAFGIQFPSTPGRPPTPLTSPRSPFPEWAANIFRSSTGGPNEDGGGVPASVDVGSVNGGRG          DNLPPTSPRFSTPSRQRQLRRAASTSWW
Sbjct:    1 MRNVRSDAQPANSTGLGGRGGDSSPESFPPGHQSRLAVPRNWRASMSRRRSEGAAGSGSGINSGITRGGSGRKEQQQSSSHLEKDGEWFGDARGVADSASEKVLAAAVQDQEQDSPAMSLLCSITKASANAVPELCSPSSLTGDAAGPRQSRLRQRGGPSRPRFSSVGSAGSGGGAVGGGRGVVAPPPGDYYRLPWYRRPLPSNRRVGVAGGGEATHLKRA------------------------------------------------------------------------------------------------------------------------------------------------VADRAGAVAQQAASKATSPVVSGNAQAEVHATPTANSMAADRDESTREEGGFADRSRSGGTAVAAGTEQPRGTSPEKEHAAESEELEKLRAEVARLKREMASMAAXXXXXXXXXXXXXXXXXXXRRPSQRIETSSPVASFSSSHAQEKHPAWQWDATAAEGGESSDADGASRPMPNRLRADNSWMQXXXXXXXXXXXXXXXXXXXXRTERRYHRDSIGVGFSGTSRPGSVLPAPRKDSSNGGERSRGSSEDIGDEVGLLSPPVNSAKIEGPSPASREKEKTAVVLEGRRRDSGADSINGASVAGAGAGXXXXXXXXXXRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXQMSVFFPVIAPPDPNADAGGTETAEGAAALASAAATRIGESVTPPGALRAARAARDAVSAKKQLQQQQQLAARHAPVVYAKIPVETVRRRGGVDGNGRVWRWVLAQRTEDQTVRQAVMSHGLPRFGRRHIWAAWAAVATPETYKKPKQSSDPAKEGSIVNTIAHDVARTKIVHPLFGSGGQGLAMLKRVLVRCAELGAVKEAGYIQGMNYLAGFMLITFADCVLSEREDLKSRSSRNRGTSGGSSTCSSNAPADSAAAGDVTEPSDVQPGPANEGSAAVETEGMGGGAEKEAAAVKEPTVAEVAQIENECVQMLQGVIALQGGVLSRDLWGLHANTELVEDLLSRQCPDVMEHLRKVNLELIVLTPRWFICIYAGSMSNQSVVTRIWDLFMWYGRRGPAVLVWVALAVLHGCRKGMFESHGLPATVKAVRRYAEGCKTFDELVRQAPVGLNEVVAAWEEQGNNRKIALLDGEGALPDRMAAGLVEEMTGEPVYLPPPEVLSPPRHRRSPSGLAPVAATSTAFGIQFPSTPGRPPTPLTSPRSPFPEWAANIFRSSTGGPNEDGGGVPASVDVGSVNGGRGGGGG------DNLPPTSPRFSTPSRQRQLRRAASTSWW 1181          
BLAST of mRNA_E-siliculosus-1a_F_contig143.2532.1 vs. uniprot
Match: A4S0J9_OSTLU (Rab-GAP TBC domain-containing protein n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4S0J9_OSTLU)

HSP 1 Score: 63.2 bits (152), Expect = 2.210e-6
Identity = 47/133 (35.34%), Postives = 63/133 (47.37%), Query Frame = 0
Query:  807 RVWRWVLAQ----RTEDQTVRQAVISHGLPRFGRRHIWAAW--------AAVATPETYKKPKQSSDPAKEGSIVNT-IAHDVARTKIVHPLFGSGGQGLAMLKRVLVRCAELGAVKEAGYIQGMNYLAGFILI 926
            R WR  +A     R   + VR    ++G+ R  R  +W AW        A+  T E Y +  + SD A   +  +  I  D+ART   H  F   G  L  L+RVL   A   A   AGY+QGMNYL GF+L+
Sbjct:   41 RRWRAFVANGRDARARGELVRAFARANGVGREARPRLWFAWSGAEAAKRASDTTYEEYLRAAELSDDAAAATTRDAQIEMDLARTFPEHARFAETGDALPALRRVLRATATSAA---AGYVQGMNYLGGFLLL 170          
BLAST of mRNA_E-siliculosus-1a_F_contig143.2532.1 vs. uniprot
Match: A0A7S0EL96_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0EL96_9EUKA)

HSP 1 Score: 54.7 bits (130), Expect = 5.610e-5
Identity = 28/111 (25.23%), Postives = 58/111 (52.25%), Query Frame = 0
Query: 1035 RDLWGLHANTELVEDLLSRQCPDVMEHLRKVNLELIVLTPRWFICIYAGSMSNQSVVTRIWDLFMWYGRRGPAVLVWVALAVLHGCR-QGMFESHGLPATVKAVRRYAEGC 1144
            + + G   +++++E LL +Q P++  HLR ++L +  +T +WF+C++  ++ ++S   R+WDL        P  +  VA+A+      Q + E+  +   V  +R     C
Sbjct:   13 QSMLGHQVDSQVLEQLLEQQLPELSAHLRSLSLSVPFVTTQWFLCLFLNALPSESCF-RVWDLIFCLH---PCTIFQVAIALFGSMEEQSLLEATDIGPAVFVIRSATRSC 119          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig143.2532.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LQ94_ECTSI0.000e+083.77Rab-GAP TBC domain-containing protein n=2 Tax=Ecto... [more]
A4S0J9_OSTLU2.210e-635.34Rab-GAP TBC domain-containing protein n=1 Tax=Ostr... [more]
A0A7S0EL96_9EUKA5.610e-525.23Hypothetical protein (Fragment) n=1 Tax=Phaeocysti... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 440..467
NoneNo IPR availableCOILSCoilCoilcoord: 292..330
NoneNo IPR availableCOILSCoilCoilcoord: 759..779
NoneNo IPR availableGENE3D1.10.472.80coord: 1032..1155
e-value: 6.1E-15
score: 57.1
NoneNo IPR availableGENE3D1.10.8.270coord: 835..932
e-value: 3.1E-8
score: 35.6
NoneNo IPR availablePANTHERPTHR46705FAMILY NOT NAMEDcoord: 272..333
NoneNo IPR availablePANTHERPTHR46705:SF10coord: 272..333
IPR000195Rab-GTPase-TBC domainSMARTSM00164tbc_4coord: 827..1128
e-value: 1.6E-5
score: 31.2
IPR000195Rab-GTPase-TBC domainPFAMPF00566RabGAP-TBCcoord: 1035..1122
e-value: 5.6E-12
score: 45.8
coord: 851..930
e-value: 4.0E-7
score: 29.9
IPR000195Rab-GTPase-TBC domainPROSITEPS50086TBC_RABGAPcoord: 830..1102
score: 14.697
IPR035969Rab-GTPase-TBC domain superfamilySUPERFAMILY47923Ypt/Rab-GAP domain of gyp1pcoord: 817..1061
IPR035969Rab-GTPase-TBC domain superfamilySUPERFAMILY47923Ypt/Rab-GAP domain of gyp1pcoord: 1036..1143

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig143contigE-siliculosus-1a_F_contig143:46776..54652 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig143.2532.1mRNA_E-siliculosus-1a_F_contig143.2532.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig143 45436..56301 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig143.2532.1 ID=prot_E-siliculosus-1a_F_contig143.2532.1|Name=mRNA_E-siliculosus-1a_F_contig143.2532.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=1327bp
MRSVRPDAQPADSAGLGGRGGDSSPESFPAGHQSRLAVPRNWRASMSRRR
SEGAAGSGSGINSGITRGGSGRKEQQQSSSHLEKDGEWFGDARGVAGSAS
EKVLGAAVQDQEQDSPAMSLLCSITKASANAVPELCSPSSLTGDAAGPRQ
SRLRQRGGPSRPRFSSVGSAGSGGGAVGGGRGVFAPPSGEYYRLPWYRRP
LPSNRRVGVAGGGEATHLKRASSMISAPRAGLRPPPVITSGAGAAAAGAA
AAAGAALNGVATPGGGERTRATEQREENQQQGKQQQRQQPDKQQQQQDKQ
QDEQQQQQQQQQQQQQQQQQQQDKQQDKQQSPANEVPVCFAATESPTERP
PLTTPMRSPTSAFEAVADRAGAAAQQAASNVVSVNAQADVHATPTANSMA
ADRDESTREEGGSADRSRSGGTAVAAGTEQPRGTSPEKEHAAESEELEKL
RAEVARLKREMASMAAAAATTGITTPKQQKSGGSRRRPSQRIETSSPVAS
FSSSHAQEKHPAWQWDATAAEGGESSDADGASRPMPNRLRADNSWMQQRR
RSSSSSSGTMERRSSGGRTERRYHRDSIGVGFSGKSRPGSVLPAPRKDSS
NGGERSRGSSEDVGDEVGLLSPPVNGTKIEGPSPASREKEKTAAVLEGRR
RDSGADSINGASGAGAGAGAGGDGADRGARGSESAGSDASVRRGGARGNE
SAGSDASMRQMSVFFPVIAPPDPNADAGGTETAEGAAALASAAATRIGET
VTPPGALRAARAARDAVSAKKQLQQQQQLAARHAPVVYAKIPVETVRRRG
GVDGNGRVWRWVLAQRTEDQTVRQAVISHGLPRFGRRHIWAAWAAVATPE
TYKKPKQSSDPAKEGSIVNTIAHDVARTKIVHPLFGSGGQGLAMLKRVLV
RCAELGAVKEAGYIQGMNYLAGFILITFADCVLSEREDLKSRSSRNRATS
GGSSTCSSNAPADSAAAGDVTEPSDVQPGPANEGGTAVETEGKGGEAEKE
AAVKEPTVAEVAQIENECVQMLQGVIALQGGVLSRDLWGLHANTELVEDL
LSRQCPDVMEHLRKVNLELIVLTPRWFICIYAGSMSNQSVVTRIWDLFMW
YGRRGPAVLVWVALAVLHGCRQGMFESHGLPATVKAVRRYAEGCKTFDDL
VRQAPVGLNQVVAAWEEQGNNRKIALLDGEGALPDRMAAGLVEEMTGEPV
YLPPPEVLSPPRHRRSPSGLAPVAATSTAFGIQFPSTPGRPPTPLTSPRS
PFPEWAANIFRSSTGGPNEDGGGVPASVDVGSVNGGRGGGGGGGGGGGDN
LPPTSPRFSTPSRQRQLRRAASTSWW*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR035969Rab-GTPase_TBC_sf
IPR000195Rab-GTPase-TBC_dom