prot_E-siliculosus-1a_F_contig1422.2490.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig1422.2490.1
Unique Nameprot_E-siliculosus-1a_F_contig1422.2490.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length261
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1422.2490.1 vs. uniprot
Match: D8LGP3_ECTSI (Flagellar protofilament ribbon protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGP3_ECTSI)

HSP 1 Score: 468 bits (1204), Expect = 4.070e-156
Identity = 237/260 (91.15%), Postives = 246/260 (94.62%), Query Frame = 0 
Query:    1 TRAVGGPRDDARGEVGCDDGGGGRAATESAVVKTGVVPDEISPAAWSSDHGGGQRLSVGGFVFPAVVVEGEGATPATNGGGRHPRATAGEEPGAGAANGGPQKRLERQLDLRGVVLDAHGVPATGRDDKIVRRALARVQAQVFGQGGEVSVLRALKAEGKTPGDAADLWTTCRLLKIVAELSRRETEGLWLKFMPAAVERAGDGGRVTFAGFLESIKTFEACIRRGELLGLTSIGRNGNCAGPLVEETSKRKQTQGQNRS 260
            TR VGGPRDDARG+VGCD GGGGRAATE AVVK G +PDEI+PAAWSSDHGGGQ+LSVGGF FPAVVVEGEGATP  +GGGRHPRAT+GEEPGAG ANG PQKRLERQLDLRGVVLDAH VPATGRDDKIVRRALARVQAQVFGQGGEVSVLRALKAEGKTPGDAADLWTTCRLLKIVAELSRRETEGLWLKFMPAAVE+AGDGGRVTFAGFLESIKTFEAC+RRGELLGLTSIG NGNCAGPLVEETSKR QTQ Q+RS
Sbjct:  721 TRVVGGPRDDARGDVGCDHGGGGRAATEFAVVKAGAIPDEINPAAWSSDHGGGQQLSVGGFSFPAVVVEGEGATPVASGGGRHPRATSGEEPGAGTANGRPQKRLERQLDLRGVVLDAHEVPATGRDDKIVRRALARVQAQVFGQGGEVSVLRALKAEGKTPGDAADLWTTCRLLKIVAELSRRETEGLWLKFMPAAVEKAGDGGRVTFAGFLESIKTFEACLRRGELLGLTSIGWNGNCAGPLVEETSKRNQTQRQHRS 980
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BLAST of mRNA_E-siliculosus-1a_F_contig1422.2490.1 vs. uniprot
Match: A0A6H5J7M8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7M8_9PHAE)

HSP 1 Score: 456 bits (1173), Expect = 3.200e-151
Identity = 234/260 (90.00%), Postives = 242/260 (93.08%), Query Frame = 0 
Query:    1 TRAVGGPRDDARGEVGCDDGGGGRAATESAVVKTGVVPDEISPAAWSSDHGGGQRLSVGGFVFPAVVVEGEGATPATNGGGRHPRATAGEEPGAGAANGGPQKRLERQLDLRGVVLDAHGVPATGRDDKIVRRALARVQAQVFGQGGEVSVLRALKAEGKTPGDAADLWTTCRLLKIVAELSRRETEGLWLKFMPAAVERAGDGGRVTFAGFLESIKTFEACIRRGELLGLTSIGRNGNCAGPLVEETSKRKQTQGQNRS 260
            TR VGGP DDARG V CD GGGGRAAT+SAVVK GVVPDEI+P AWS DHGGGQR+SVGGF FPAVVVEGEGATPATNGG    +ATAGEEPGA AANGG QKRLERQLDLRGVVLDAH VPATGRDDKIVRRALARVQAQVFGQGGEVSVLRALKAEGKTPGDAADLWTTCRLL IVAELSRRETEGLWLKFMPAAVE+AGDGGRVTFAGFLESI+TFE C+RRGELLGLTSIGRNGNCAGPLVE+TSKRKQTQGQNRS
Sbjct:  746 TRVVGGPWDDARGAVDCDHGGGGRAATKSAVVKAGVVPDEINPTAWSFDHGGGQRISVGGFSFPAVVVEGEGATPATNGGAPLSQATAGEEPGARAANGGSQKRLERQLDLRGVVLDAHEVPATGRDDKIVRRALARVQAQVFGQGGEVSVLRALKAEGKTPGDAADLWTTCRLLNIVAELSRRETEGLWLKFMPAAVEKAGDGGRVTFAGFLESIRTFEVCLRRGELLGLTSIGRNGNCAGPLVEDTSKRKQTQGQNRS 1005
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1422.2490.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LGP3_ECTSI4.070e-15691.15Flagellar protofilament ribbon protein n=1 Tax=Ect... [more]
A0A6H5J7M8_9PHAE3.200e-15190.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1422contigE-siliculosus-1a_F_contig1422:8434..10772 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1422.2490.1mRNA_E-siliculosus-1a_F_contig1422.2490.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig1422 8434..10772 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig1422.2490.1 ID=prot_E-siliculosus-1a_F_contig1422.2490.1|Name=mRNA_E-siliculosus-1a_F_contig1422.2490.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=261bp
TRAVGGPRDDARGEVGCDDGGGGRAATESAVVKTGVVPDEISPAAWSSDH
GGGQRLSVGGFVFPAVVVEGEGATPATNGGGRHPRATAGEEPGAGAANGG
PQKRLERQLDLRGVVLDAHGVPATGRDDKIVRRALARVQAQVFGQGGEVS
VLRALKAEGKTPGDAADLWTTCRLLKIVAELSRRETEGLWLKFMPAAVER
AGDGGRVTFAGFLESIKTFEACIRRGELLGLTSIGRNGNCAGPLVEETSK
RKQTQGQNRS*
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