mRNA_E-siliculosus-1a_F_contig1422.2490.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1422.2490.1
Unique NamemRNA_E-siliculosus-1a_F_contig1422.2490.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1422.2490.1 vs. uniprot
Match: D8LGP3_ECTSI (Flagellar protofilament ribbon protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGP3_ECTSI)

HSP 1 Score: 468 bits (1204), Expect = 4.070e-156
Identity = 237/260 (91.15%), Postives = 246/260 (94.62%), Query Frame = 1 
Query:    1 TRAVGGPRDDARGEVGCDDGGGGRAATESAVVKTGVVPDEISPAAWSSDHGGGQRLSVGGFVFPAVVVEGEGATPATNGGGRHPRATAGEEPGAGAANGGPQKRLERQLDLRGVVLDAHGVPATGRDDKIVRRALARVQAQVFGQGGEVSVLRALKAEGKTPGDAADLWTTCRLLKIVAELSRRETEGLWLKFMPAAVERAGDGGRVTFAGFLESIKTFEACIRRGELLGLTSIGRNGNCAGPLVEETSKRKQTQGQNRS 780
            TR VGGPRDDARG+VGCD GGGGRAATE AVVK G +PDEI+PAAWSSDHGGGQ+LSVGGF FPAVVVEGEGATP  +GGGRHPRAT+GEEPGAG ANG PQKRLERQLDLRGVVLDAH VPATGRDDKIVRRALARVQAQVFGQGGEVSVLRALKAEGKTPGDAADLWTTCRLLKIVAELSRRETEGLWLKFMPAAVE+AGDGGRVTFAGFLESIKTFEAC+RRGELLGLTSIG NGNCAGPLVEETSKR QTQ Q+RS
Sbjct:  721 TRVVGGPRDDARGDVGCDHGGGGRAATEFAVVKAGAIPDEINPAAWSSDHGGGQQLSVGGFSFPAVVVEGEGATPVASGGGRHPRATSGEEPGAGTANGRPQKRLERQLDLRGVVLDAHEVPATGRDDKIVRRALARVQAQVFGQGGEVSVLRALKAEGKTPGDAADLWTTCRLLKIVAELSRRETEGLWLKFMPAAVEKAGDGGRVTFAGFLESIKTFEACLRRGELLGLTSIGWNGNCAGPLVEETSKRNQTQRQHRS 980
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BLAST of mRNA_E-siliculosus-1a_F_contig1422.2490.1 vs. uniprot
Match: A0A6H5J7M8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7M8_9PHAE)

HSP 1 Score: 456 bits (1173), Expect = 3.200e-151
Identity = 234/260 (90.00%), Postives = 242/260 (93.08%), Query Frame = 1 
Query:    1 TRAVGGPRDDARGEVGCDDGGGGRAATESAVVKTGVVPDEISPAAWSSDHGGGQRLSVGGFVFPAVVVEGEGATPATNGGGRHPRATAGEEPGAGAANGGPQKRLERQLDLRGVVLDAHGVPATGRDDKIVRRALARVQAQVFGQGGEVSVLRALKAEGKTPGDAADLWTTCRLLKIVAELSRRETEGLWLKFMPAAVERAGDGGRVTFAGFLESIKTFEACIRRGELLGLTSIGRNGNCAGPLVEETSKRKQTQGQNRS 780
            TR VGGP DDARG V CD GGGGRAAT+SAVVK GVVPDEI+P AWS DHGGGQR+SVGGF FPAVVVEGEGATPATNGG    +ATAGEEPGA AANGG QKRLERQLDLRGVVLDAH VPATGRDDKIVRRALARVQAQVFGQGGEVSVLRALKAEGKTPGDAADLWTTCRLL IVAELSRRETEGLWLKFMPAAVE+AGDGGRVTFAGFLESI+TFE C+RRGELLGLTSIGRNGNCAGPLVE+TSKRKQTQGQNRS
Sbjct:  746 TRVVGGPWDDARGAVDCDHGGGGRAATKSAVVKAGVVPDEINPTAWSFDHGGGQRISVGGFSFPAVVVEGEGATPATNGGAPLSQATAGEEPGARAANGGSQKRLERQLDLRGVVLDAHEVPATGRDDKIVRRALARVQAQVFGQGGEVSVLRALKAEGKTPGDAADLWTTCRLLNIVAELSRRETEGLWLKFMPAAVEKAGDGGRVTFAGFLESIRTFEVCLRRGELLGLTSIGRNGNCAGPLVEDTSKRKQTQGQNRS 1005
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1422.2490.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LGP3_ECTSI4.070e-15691.15Flagellar protofilament ribbon protein n=1 Tax=Ect... [more]
A0A6H5J7M8_9PHAE3.200e-15190.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1422contigE-siliculosus-1a_F_contig1422:8434..10772 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size783
Model size783
Exons3
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1422.2490.1prot_E-siliculosus-1a_F_contig1422.2490.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1422 8434..10772 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927937.0105627-CDS-E-siliculosus-1a_F_contig1422:8433..86811622927937.0105627-CDS-E-siliculosus-1a_F_contig1422:8433..8681Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1422 8434..8681 -
1696318744.6081786-CDS-E-siliculosus-1a_F_contig1422:8433..86811696318744.6081786-CDS-E-siliculosus-1a_F_contig1422:8433..8681Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1422 8434..8681 -
1622927937.0244534-CDS-E-siliculosus-1a_F_contig1422:9125..93001622927937.0244534-CDS-E-siliculosus-1a_F_contig1422:9125..9300Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1422 9126..9300 -
1696318744.617577-CDS-E-siliculosus-1a_F_contig1422:9125..93001696318744.617577-CDS-E-siliculosus-1a_F_contig1422:9125..9300Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1422 9126..9300 -
1622927937.045577-CDS-E-siliculosus-1a_F_contig1422:10412..107721622927937.045577-CDS-E-siliculosus-1a_F_contig1422:10412..10772Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1422 10413..10772 -
1696318744.627617-CDS-E-siliculosus-1a_F_contig1422:10412..107721696318744.627617-CDS-E-siliculosus-1a_F_contig1422:10412..10772Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1422 10413..10772 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1422.2490.1

>prot_E-siliculosus-1a_F_contig1422.2490.1 ID=prot_E-siliculosus-1a_F_contig1422.2490.1|Name=mRNA_E-siliculosus-1a_F_contig1422.2490.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=261bp
TRAVGGPRDDARGEVGCDDGGGGRAATESAVVKTGVVPDEISPAAWSSDH
GGGQRLSVGGFVFPAVVVEGEGATPATNGGGRHPRATAGEEPGAGAANGG
PQKRLERQLDLRGVVLDAHGVPATGRDDKIVRRALARVQAQVFGQGGEVS
VLRALKAEGKTPGDAADLWTTCRLLKIVAELSRRETEGLWLKFMPAAVER
AGDGGRVTFAGFLESIKTFEACIRRGELLGLTSIGRNGNCAGPLVEETSK
RKQTQGQNRS*
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mRNA from alignment at E-siliculosus-1a_F_contig1422:8434..10772-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1422.2490.1 ID=mRNA_E-siliculosus-1a_F_contig1422.2490.1|Name=mRNA_E-siliculosus-1a_F_contig1422.2490.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2339bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1422:8434..10772- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ACCCGCGCGGTGGGGGGCCCGCGGGATGATGCGCGCGGGGAGGTAGGCTG
CGACGACGGCGGCGGTGGTAGGGCGGCGACGGAGTCCGCGGTTGTCAAGA
CCGGGGTCGTCCCCGATGAGATAAGTCCCGCCGCTTGGAGTTCCGATCAC
GGCGGCGGGCAGCGGCTTTCGGTGGGGGGGTTCGTGTTTCCGGCGGTCGT
GGTGGAAGGGGAGGGGGCAACGCCAGCGACCAACGGGGGGGGTCGGCATC
CGCGGGCGACCGCGGGCGAGGAGCCGGGAGCGGGGGCGGCGAACGGCGGG
CCGCAGAAGAGGCTGGAGAGGCAGCTGGACCTACGCGGCGTGGTTCTGGA
TGCTCACGGGGTAAATTTTGAAGATAGATGTGTGCTGGCTATTCTTGTAC
ACATGAGAAATGTGGCTGCAGCACATCCCCTCCCCTTTTCCTCGGGTGTG
GTGCACAGCTACCCAGCGCTCCACGAGAGAGCAAGAGAAAATTTGCCCGC
AGTTTTCTGGTTAGACAATTATTTTGCATGGAGTTTTCTGATTGGCAAAA
TAACCCTGGTTGACACGATGCGTCATCCACGAGAGGGTCACGTTGTTCTA
GAACAAAAAAATATTTCAATCTGACCGTGCAGGTTGCGTCGGCTGATTGA
TGATGATGATTGGTCAGTATTGACATCTATCTCTGTTGGTTGGTGAGTAC
AAATACACACACAAAAAAACCGACTGCTGTACCATACACTGCAATACTAG
AGGTAGCCTGTGTGAGTTGCCATCATCAGTGTAAGCCCAAATACCCAACA
GAGACCGATCACCGAGGTACAGCAGCTACCAGCGGCAGCTAAGTTGTTTG
TTGGGGGACGTAGTGCGCGGAGGATTATGAAACCACACCGACCGACTGAG
GTTGAGTGTGTTGGTTGTTGAAGCACTCTTGAACCATCACTCACTTCACA
CAGCAGTAGACTATACATTTTCCTTCCATCCATCCATCCATCCATGCATC
CATCCATCCACACTTCATTCATCACACACAAAGTGTGCGACCTGGTCGTA
GTCACAATCGAAATCACACATAATACATACATACCACACGCATACTATTG
TACTGCTGCTGTTGTATCTATACTCACTCGTACACTCTTCTTCTTGTACA
CGACGAGATAGATATCGTAAAGAAGAACCACGATCAATCTTTACTCGACG
AACCATTCGAAAGATACATACAACTCACAACGACGGCCACCACCACCAAT
CTTACCGGAAAATAATCGTCTCCCGATTACTACCCCAGGCGCGCACAAAC
ACATGCATCCCGCTCTCTCTCTCTACGTAGATCGATTCACCCGCGCTTTC
GAGAAAGAACGACACGCGTTCTCGCCTCTCATATCTCGACAGCAGTTTTC
CCAACACACAGTAATACCCACCACCCGCACGTACAACAATTAGGATTATG
GCTCCCCTCCTTTTTATGGTAGGTTCCTGCGACCGGAAGAGACGACAAGA
TCGTGCGGCGCGCTCTGGCGAGGGTACAGGCCCAGGTGTTCGGCCAAGGG
GGCGAGGTGTCAGTGCTGAGGGCGCTCAAGGCGGAGGGAAAGACTCCCGG
AGACGCCGCAGACTTGTGGACGACGTGCCGCCTGCTGAAGATCGTAGGTA
AGCTGGGTGTCCGGGGAGCGGCGGAAAGGCAGTAGGTGCGTGGCGCGACT
TGGGCACTCACTCGCATTGTCGGGTGTCATTCTCACCGGTTCCAGGTTGG
GTAATTTCGCTCCTCGCACCTTGTCTTTCGCGGCGTTGATGCGTCACCGG
CGTGCGGTGTTGTTCTGAGGAGGCTTCGTAATTAGCGTGCAACCCGCATC
CGCTGAGTGCGCTACGCTCGTGTTTCGATATACCTAAATTTTATGTAGTG
ACCCTAGGCAAACCCTGGCTAGCGACGGAAAACGTCCATCTGTCTGTCAA
TATGCGTCCACGAGGACAAATGCCATGGAAAATCGTGACGCGCAACCCCC
ACCAAGCGTTCTCGCCTTGATCCACCCTCGCTATTCTAACATCTGCTGGC
CAACGCTCGTCTGCACCGCATCGCACCGCACCACACGGCAGCGGAGCTGT
CCCGCCGGGAAACGGAGGGCCTGTGGCTCAAGTTCATGCCCGCCGCCGTC
GAAAGGGCGGGGGACGGGGGAAGGGTGACTTTCGCGGGTTTCCTGGAGTC
CATCAAGACCTTCGAGGCGTGCATACGGAGGGGGGAGTTGTTGGGGCTGA
CGAGTATCGGGCGGAACGGCAACTGCGCCGGACCCCTAGTCGAGGAGACC
AGCAAACGCAAACAAACCCAGGGACAGAACCGTTCGTGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1422:8434..10772-

>mRNA_E-siliculosus-1a_F_contig1422.2490.1 ID=mRNA_E-siliculosus-1a_F_contig1422.2490.1|Name=mRNA_E-siliculosus-1a_F_contig1422.2490.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1566bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1422:8434..10772- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ACCCGCGCGGTGGGGGGCCCGCGGGATGATGCGCGCGGGGAGGTAGGCTG
CGACGACGGCGGCGGTGGTAGGGCGGCGACGGAGTCCGCGGTTGTCAAGA
CCGGGGTCGTCCCCGATGAGATAAGTCCCGCCGCTTGGAGTTCCGATCAC
GGCGGCGGGCAGCGGCTTTCGGTGGGGGGGTTCGTGTTTCCGGCGGTCGT
GGTGGAAGGGGAGGGGGCAACGCCAGCGACCAACGGGGGGGGTCGGCATC
CGCGGGCGACCGCGGGCGAGGAGCCGGGAGCGGGGGCGGCGAACGGCGGG
CCGCAGAAGAGGCTGGAGAGGCAGCTGGACCTACGCGGCGTGGTTCTGGA
TGCTCACGGGACCCGCGCGGTGGGGGGCCCGCGGGATGATGCGCGCGGGG
AGGTAGGCTGCGACGACGGCGGCGGTGGTAGGGCGGCGACGGAGTCCGCG
GTTGTCAAGACCGGGGTCGTCCCCGATGAGATAAGTCCCGCCGCTTGGAG
TTCCGATCACGGCGGCGGGCAGCGGCTTTCGGTGGGGGGGTTCGTGTTTC
CGGCGGTCGTGGTGGAAGGGGAGGGGGCAACGCCAGCGACCAACGGGGGG
GGTCGGCATCCGCGGGCGACCGCGGGCGAGGAGCCGGGAGCGGGGGCGGC
GAACGGCGGGCCGCAGAAGAGGCTGGAGAGGCAGCTGGACCTACGCGGCG
TGGTTCTGGATGCTCACGGGGTTCCTGCGACCGGAAGAGACGACAAGATC
GTGCGGCGCGCTCTGGCGAGGGTACAGGCCCAGGTGTTCGGCCAAGGGGG
CGAGGTGTCAGTGCTGAGGGCGCTCAAGGCGGAGGGAAAGACTCCCGGAG
ACGCCGCAGACTTGTGGACGACGTGCCGCCTGCTGAAGATCGTAGGTTCC
TGCGACCGGAAGAGACGACAAGATCGTGCGGCGCGCTCTGGCGAGGGTAC
AGGCCCAGGTGTTCGGCCAAGGGGGCGAGGTGTCAGTGCTGAGGGCGCTC
AAGGCGGAGGGAAAGACTCCCGGAGACGCCGCAGACTTGTGGACGACGTG
CCGCCTGCTGAAGATCGTAGCGGAGCTGTCCCGCCGGGAAACGGAGGGCC
TGTGGCTCAAGTTCATGCCCGCCGCCGTCGAAAGGGCGGGGGACGGGGGA
AGGGTGACTTTCGCGGGTTTCCTGGAGTCCATCAAGACCTTCGAGGCGTG
CATACGGAGGGGGGAGTTGTTGGGGCTGACGAGTATCGGGCGGAACGGCA
ACTGCGCCGGACCCCTAGTCGAGGAGACCAGCAAACGCAAACAAACCCAG
GGACAGAACCGTTCGTGACGGAGCTGTCCCGCCGGGAAACGGAGGGCCTG
TGGCTCAAGTTCATGCCCGCCGCCGTCGAAAGGGCGGGGGACGGGGGAAG
GGTGACTTTCGCGGGTTTCCTGGAGTCCATCAAGACCTTCGAGGCGTGCA
TACGGAGGGGGGAGTTGTTGGGGCTGACGAGTATCGGGCGGAACGGCAAC
TGCGCCGGACCCCTAGTCGAGGAGACCAGCAAACGCAAACAAACCCAGGG
ACAGAACCGTTCGTGA
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