prot_E-siliculosus-1a_F_contig1406.2405.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig1406.2405.1
Unique Nameprot_E-siliculosus-1a_F_contig1406.2405.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length209
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1406.2405.1 vs. uniprot
Match: A0A6H5KIY4_9PHAE (PHD-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIY4_9PHAE)

HSP 1 Score: 299 bits (766), Expect = 2.850e-90
Identity = 183/193 (94.82%), Postives = 185/193 (95.85%), Query Frame = 0 
Query:    2 ALASDARGGWSGVGSGEQGTADDDXXXXXXXXXXXXXXRTDLVANGSVVQGGTVQMAFEGGCYGSVQIHNKRYLAVMLEADEVAAGGAAMALCGGQTTRSPGLMDILNLRQAQGLMPNFDSINLRVCPISSTASLLAGASPSVPPRQQQLLQQKQLQRAQGSGEAAMEAVSQPVVRRPLRMVDDPAKMSVAEK 194
            ALASDARGGWSGVGSGEQG  DD XXXXXXXXXXXXXXRTDLVANGSVVQGGTVQMAFEGGCYGSVQIHNKRYLAVMLEADEVAAGGAAMALCGGQT RSPGLMDILNLRQAQGLMPNFDSINLRVCPISSTASLLAGASP VPPRQQQLLQQKQLQRAQGSGEAA+EAVSQPVVR PLRMVD+PA MS AEK
Sbjct:  147 ALASDARGGWSGVGSGEQGATDDXXXXXXXXXXXXXXXRTDLVANGSVVQGGTVQMAFEGGCYGSVQIHNKRYLAVMLEADEVAAGGAAMALCGGQT-RSPGLMDILNLRQAQGLMPNFDSINLRVCPISSTASLLAGASPLVPPRQQQLLQQKQLQRAQGSGEAAIEAVSQPVVR-PLRMVDNPANMSAAEK 337
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BLAST of mRNA_E-siliculosus-1a_F_contig1406.2405.1 vs. uniprot
Match: D8LQQ1_ECTSI (PHD-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQQ1_ECTSI)

HSP 1 Score: 259 bits (663), Expect = 1.940e-76
Identity = 158/165 (95.76%), Postives = 160/165 (96.97%), Query Frame = 0 
Query:    1 GALASDARGGWSGVGSGEQGTA-DDDXXXXXXXXXXXXXXRTDLVANGSVVQGGTVQMAFEGGCYGSVQIHNKRYLAVMLEADEVAAGGAAMALCGGQTTRSPGLMDILNLRQAQGLMPNFDSINLRVCPISSTASLLAGASPSVPPRQQQLLQQKQLQRAQGSG 164
            GALASDARGGW GVGSGEQGTA D  XXXXXXXXXXXXXXRTDLVANGSVVQGGTVQMAFEGGCYGSVQIHNKRYLAVMLEADEVAAGGAAMALCGGQ TRSPGLMDILNLRQAQGLMPNFDSINLRVCPISSTASLLAGASPSVPPRQQQLLQQ+QLQRA+GSG
Sbjct:  291 GALASDARGGWPGVGSGEQGTAADXXXXXXXXXXXXXXXXRTDLVANGSVVQGGTVQMAFEGGCYGSVQIHNKRYLAVMLEADEVAAGGAAMALCGGQRTRSPGLMDILNLRQAQGLMPNFDSINLRVCPISSTASLLAGASPSVPPRQQQLLQQQQLQRARGSG 455
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1406.2405.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KIY4_9PHAE2.850e-9094.82PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
D8LQQ1_ECTSI1.940e-7695.76PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1406contigE-siliculosus-1a_F_contig1406:4346..6069 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1406.2405.1mRNA_E-siliculosus-1a_F_contig1406.2405.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig1406 4344..6069 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig1406.2405.1 ID=prot_E-siliculosus-1a_F_contig1406.2405.1|Name=mRNA_E-siliculosus-1a_F_contig1406.2405.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=209bp
GALASDARGGWSGVGSGEQGTADDDRTVVVGGGSGSKRRRTDLVANGSVV
QGGTVQMAFEGGCYGSVQIHNKRYLAVMLEADEVAAGGAAMALCGGQTTR
SPGLMDILNLRQAQGLMPNFDSINLRVCPISSTASLLAGASPSVPPRQQQ
LLQQKQLQRAQGSGEAAMEAVSQPVVRRPLRMVDDPAKMSVAEKKARRAA
RMQVVLQQQ
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