mRNA_E-siliculosus-1a_F_contig1406.2405.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1406.2405.1
Unique NamemRNA_E-siliculosus-1a_F_contig1406.2405.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1406.2405.1 vs. uniprot
Match: A0A6H5KIY4_9PHAE (PHD-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIY4_9PHAE)

HSP 1 Score: 299 bits (766), Expect = 2.850e-90
Identity = 183/193 (94.82%), Postives = 185/193 (95.85%), Query Frame = 1 
Query:    4 ALASDARGGWSGVGSGEQGTADDDXXXXXXXXXXXXXXRTDLVANGSVVQGGTVQMAFEGGCYGSVQIHNKRYLAVMLEADEVAAGGAAMALCGGQTTRSPGLMDILNLRQAQGLMPNFDSINLRVCPISSTASLLAGASPSVPPRQQQLLQQKQLQRAQGSGEAAMEAVSQPVVRRPLRMVDDPAKMSVAEK 582
            ALASDARGGWSGVGSGEQG  DD XXXXXXXXXXXXXXRTDLVANGSVVQGGTVQMAFEGGCYGSVQIHNKRYLAVMLEADEVAAGGAAMALCGGQT RSPGLMDILNLRQAQGLMPNFDSINLRVCPISSTASLLAGASP VPPRQQQLLQQKQLQRAQGSGEAA+EAVSQPVVR PLRMVD+PA MS AEK
Sbjct:  147 ALASDARGGWSGVGSGEQGATDDXXXXXXXXXXXXXXXRTDLVANGSVVQGGTVQMAFEGGCYGSVQIHNKRYLAVMLEADEVAAGGAAMALCGGQT-RSPGLMDILNLRQAQGLMPNFDSINLRVCPISSTASLLAGASPLVPPRQQQLLQQKQLQRAQGSGEAAIEAVSQPVVR-PLRMVDNPANMSAAEK 337
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BLAST of mRNA_E-siliculosus-1a_F_contig1406.2405.1 vs. uniprot
Match: D8LQQ1_ECTSI (PHD-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQQ1_ECTSI)

HSP 1 Score: 259 bits (663), Expect = 1.940e-76
Identity = 158/165 (95.76%), Postives = 160/165 (96.97%), Query Frame = 1 
Query:    1 GALASDARGGWSGVGSGEQGTA-DDDXXXXXXXXXXXXXXRTDLVANGSVVQGGTVQMAFEGGCYGSVQIHNKRYLAVMLEADEVAAGGAAMALCGGQTTRSPGLMDILNLRQAQGLMPNFDSINLRVCPISSTASLLAGASPSVPPRQQQLLQQKQLQRAQGSG 492
            GALASDARGGW GVGSGEQGTA D  XXXXXXXXXXXXXXRTDLVANGSVVQGGTVQMAFEGGCYGSVQIHNKRYLAVMLEADEVAAGGAAMALCGGQ TRSPGLMDILNLRQAQGLMPNFDSINLRVCPISSTASLLAGASPSVPPRQQQLLQQ+QLQRA+GSG
Sbjct:  291 GALASDARGGWPGVGSGEQGTAADXXXXXXXXXXXXXXXXRTDLVANGSVVQGGTVQMAFEGGCYGSVQIHNKRYLAVMLEADEVAAGGAAMALCGGQRTRSPGLMDILNLRQAQGLMPNFDSINLRVCPISSTASLLAGASPSVPPRQQQLLQQQQLQRARGSG 455
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1406.2405.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KIY4_9PHAE2.850e-9094.82PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
D8LQQ1_ECTSI1.940e-7695.76PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1406contigE-siliculosus-1a_F_contig1406:4344..6069 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size627
Model size629
Exons3
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko01000,ko03036
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.K
EggNOG OGsCOG1231@1,COG2940@1,KOG0029@2759,KOG1084@2759
EggNOG free text desc.SET domain
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006325,GO:0006464,GO:0006476,GO:0006479,GO:0006807,GO:0006996,GO:0007275,GO:0008150,GO:0008152,GO:0008213,GO:0009987,GO:0016043,GO:0016569,GO:0016570,GO:0016571,GO:0016575,GO:0018022,GO:0018193,GO:0018205,GO:0019538,GO:0022622,GO:0032259,GO:0032501,GO:0032502,GO:0034968,GO:0035601,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0048364,GO:0048731,GO:0048856,GO:0051276,GO:0051568,GO:0071704,GO:0071840,GO:0098732,GO:0099402,GO:1901564
KEGG Pathwayko04714,map04714
KEGG koko:K11450
Seed eggNOG ortholog2880.D8LQQ1
Seed ortholog evalue6.6e-68
Seed ortholog score263.8
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1406.2405.1prot_E-siliculosus-1a_F_contig1406.2405.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1406 4346..6069 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927921.4164135-CDS-E-siliculosus-1a_F_contig1406:4345..46811622927921.4164135-CDS-E-siliculosus-1a_F_contig1406:4345..4681Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1406 4346..4681 -
1696318737.7792523-CDS-E-siliculosus-1a_F_contig1406:4345..46811696318737.7792523-CDS-E-siliculosus-1a_F_contig1406:4345..4681Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1406 4346..4681 -
1622927921.4285583-CDS-E-siliculosus-1a_F_contig1406:5400..54871622927921.4285583-CDS-E-siliculosus-1a_F_contig1406:5400..5487Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1406 5401..5487 -
1696318737.788789-CDS-E-siliculosus-1a_F_contig1406:5400..54871696318737.788789-CDS-E-siliculosus-1a_F_contig1406:5400..5487Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1406 5401..5487 -
1622927921.4392679-CDS-E-siliculosus-1a_F_contig1406:5865..60691622927921.4392679-CDS-E-siliculosus-1a_F_contig1406:5865..6069Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1406 5866..6069 -
1696318737.7984524-CDS-E-siliculosus-1a_F_contig1406:5865..60691696318737.7984524-CDS-E-siliculosus-1a_F_contig1406:5865..6069Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1406 5866..6069 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1406.2405.1

>prot_E-siliculosus-1a_F_contig1406.2405.1 ID=prot_E-siliculosus-1a_F_contig1406.2405.1|Name=mRNA_E-siliculosus-1a_F_contig1406.2405.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=209bp
GALASDARGGWSGVGSGEQGTADDDRTVVVGGGSGSKRRRTDLVANGSVV
QGGTVQMAFEGGCYGSVQIHNKRYLAVMLEADEVAAGGAAMALCGGQTTR
SPGLMDILNLRQAQGLMPNFDSINLRVCPISSTASLLAGASPSVPPRQQQ
LLQQKQLQRAQGSGEAAMEAVSQPVVRRPLRMVDDPAKMSVAEKKARRAA
RMQVVLQQQ
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mRNA from alignment at E-siliculosus-1a_F_contig1406:4344..6069-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1406.2405.1 ID=mRNA_E-siliculosus-1a_F_contig1406.2405.1|Name=mRNA_E-siliculosus-1a_F_contig1406.2405.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1726bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1406:4344..6069- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGCGCGCTGGCCTCGGACGCACGGGGGGGTTGGTCGGGTGTCGGGTCCGG
CGAGCAAGGCACGGCCGACGACGACCGTACGGTCGTTGTCGGCGGCGGTA
GCGGTAGCAAGAGGCGACGGACCGACCTGGTGGCGAACGGTTCCGTCGTT
CAGGGCGGGACCGTGCAGATGGCTTTCGAGGGTGGCTGCTACGGGTCCGT
TCAGGTCAGCTTGCCGTTCTTCGTTCGATGGGACAATCACACATTTGCGT
TTCCTCGCCAAGCGCAGTCGTAGTGCTAGTCTGCGCCACAAGAGCCGGCA
GGGCGACGCTCATGGCGTCTTTCATTGTCAGCCGGTTGTAGGCGTTCGAT
GCCATTGGTACATTAAACTCGAGCACCGAGTGGTTATTACAGTCAGCTGG
CTAGCGCGGTCGATGCTATTTCGAAAAACACACACGCACACTTGGGATAG
TGCTCTCCGCGTCTACCGTCAAGTACATCTTTGCCGTCTTGAGAAGATCG
CGTTGCCGACTCCACACGACTCGCGCACTCTCAAGTTCGTCCGCTTGTCC
CTTTTTTTGTTGTTGCCGCGGACGCGTATCAGATCCACAACAAGCGGTAC
CTGGCGGTTATGCTTGAGGCAGACGAGGTGGCGGCCGGTGGGGCGGCGAT
GGCCCTCTGCGGAGGCCAGGTGAGAATCTTGCCGGGAAGGGGGTGTGGGG
GGGTGTACTCAAAGTCGTGCTTGCCGAAGTCTTTGGGCCGTTGACCTCGC
ATCCCTACGAAGCAGAGAGCACGCCGGGTTCTCACCGGACTAGGCTCTCC
ACATCACCAAGCGCGAAGCGCCGTGAGGTATTCGGCGAGTTGCATGGAGG
GTGTGCTGGATCCTGCTAAGGGTGTTCGACTTCTTGTACTTACTTCCACG
GGGGGGGGGGCACTTTTTCCTTTGTCTGTCTCGACGTCGGCGTGAAAAAA
TACCCAGTTGACGGTTTCAGAGGTGCAGGGGAATCTCAAGAACAATGTTC
TTCTTGTGAAGAGCCCAACGAACAACTCGTTGAGACCTTGACGAGTGTGC
GCGTTCCTTCCGTCCGCTTGGACCCCATCTACATCTCTAGAGGCACACAG
CAGCACGCCCCGTAGAAATAATCTGAGGCGGTCCGCTCTAATCCAGGCGT
TGTTGTTGTCGTTTTTGTTTTTTCTCGTAGGTCTCCCTGCTCTAGTCCAG
GCGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTCGTG
CTTGTCTCTTTCTGTCATAGGCCTCCTCTCACTCTGGCTCGAACCCCTCC
CGTCTTGCCTTCTTATCACTCGCCGTCTCACGTTCTCTCTCGCTCGCTCG
TTCCTTTTCGGCCCCCATCGTGCGCCAACGCGTCGCAGACGACGAGGAGC
CCCGGGCTGATGGACATCCTCAACCTCAGGCAGGCCCAGGGCCTGATGCC
CAACTTCGACTCGATCAACCTCAGAGTGTGCCCGATATCATCCACCGCCA
GCCTCCTGGCGGGGGCGTCGCCCTCGGTGCCGCCGCGCCAGCAGCAGCTG
CTGCAGCAGAAGCAACTCCAGCGGGCACAAGGGTCGGGGGAGGCGGCGAT
GGAGGCGGTGTCGCAGCCGGTGGTGCGTCGTCCGCTGAGGATGGTCGATG
ACCCCGCTAAGATGTCGGTGGCGGAGAAGAAGGCGAGAAGGGCCGCCCGG
ATGCAGGTGGTGCTGCAGCAGCAGGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1406:4344..6069-

>mRNA_E-siliculosus-1a_F_contig1406.2405.1 ID=mRNA_E-siliculosus-1a_F_contig1406.2405.1|Name=mRNA_E-siliculosus-1a_F_contig1406.2405.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1254bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1406:4344..6069- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGCGCGCTGGCCTCGGACGCACGGGGGGGTTGGTCGGGTGTCGGGTCCGG
CGAGCAAGGCACGGCCGACGACGACCGTACGGTCGTTGTCGGCGGCGGTA
GCGGTAGCAAGAGGCGACGGACCGACCTGGTGGCGAACGGTTCCGTCGTT
CAGGGCGGGACCGTGCAGATGGCTTTCGAGGGTGGCTGCTACGGGTCCGT
TCAGGGCGCGCTGGCCTCGGACGCACGGGGGGGTTGGTCGGGTGTCGGGT
CCGGCGAGCAAGGCACGGCCGACGACGACCGTACGGTCGTTGTCGGCGGC
GGTAGCGGTAGCAAGAGGCGACGGACCGACCTGGTGGCGAACGGTTCCGT
CGTTCAGGGCGGGACCGTGCAGATGGCTTTCGAGGGTGGCTGCTACGGGT
CCGTTCAGATCCACAACAAGCGGTACCTGGCGGTTATGCTTGAGGCAGAC
GAGGTGGCGGCCGGTGGGGCGGCGATGGCCCTCTGCGGAGGCCAGATCCA
CAACAAGCGGTACCTGGCGGTTATGCTTGAGGCAGACGAGGTGGCGGCCG
GTGGGGCGGCGATGGCCCTCTGCGGAGGCCAGACGACGAGGAGCCCCGGG
CTGATGGACATCCTCAACCTCAGGCAGGCCCAGGGCCTGATGCCCAACTT
CGACTCGATCAACCTCAGAGTGTGCCCGATATCATCCACCGCCAGCCTCC
TGGCGGGGGCGTCGCCCTCGGTGCCGCCGCGCCAGCAGCAGCTGCTGCAG
CAGAAGCAACTCCAGCGGGCACAAGGGTCGGGGGAGGCGGCGATGGAGGC
GGTGTCGCAGCCGGTGGTGCGTCGTCCGCTGAGGATGGTCGATGACCCCG
CTAAGATGTCGGTGGCGGAGAAGAAGGCGAGAAGGGCCGCCCGGATGCAG
GTGGTGCTGCAGCAGCAGACGACGAGGAGCCCCGGGCTGATGGACATCCT
CAACCTCAGGCAGGCCCAGGGCCTGATGCCCAACTTCGACTCGATCAACC
TCAGAGTGTGCCCGATATCATCCACCGCCAGCCTCCTGGCGGGGGCGTCG
CCCTCGGTGCCGCCGCGCCAGCAGCAGCTGCTGCAGCAGAAGCAACTCCA
GCGGGCACAAGGGTCGGGGGAGGCGGCGATGGAGGCGGTGTCGCAGCCGG
TGGTGCGTCGTCCGCTGAGGATGGTCGATGACCCCGCTAAGATGTCGGTG
GCGGAGAAGAAGGCGAGAAGGGCCGCCCGGATGCAGGTGGTGCTGCAGCA
GCAG
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