prot_E-siliculosus-1a_F_contig13891.2306.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig13891.2306.1
Unique Nameprot_E-siliculosus-1a_F_contig13891.2306.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length48
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig13891.2306.1 vs. uniprot
Match: A0A1E7F0G0_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F0G0_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 2.010e-17
Identity = 35/48 (72.92%), Postives = 41/48 (85.42%), Query Frame = 0
Query:    1 SGVNRHSDKHAPRHIPEAQDAFKVLMIHWILQVARRIAFRCVLHRCGS 48
            SG++RHSDKHA   IP+AQ AFK+LMIH +LQ A RIAFRCVLHRCG+
Sbjct:    2 SGIHRHSDKHATGKIPKAQCAFKILMIHEVLQFALRIAFRCVLHRCGN 49          
BLAST of mRNA_E-siliculosus-1a_F_contig13891.2306.1 vs. uniprot
Match: A0A524MI88_9PROT (Uncharacterized protein n=1 Tax=Nitrosomonadales bacterium TaxID=2026761 RepID=A0A524MI88_9PROT)

HSP 1 Score: 75.9 bits (185), Expect = 1.520e-16
Identity = 35/48 (72.92%), Postives = 40/48 (83.33%), Query Frame = 0
Query:    1 SGVNRHSDKHAPRHIPEAQDAFKVLMIHWILQVARRIAFRCVLHRCGS 48
            SGV+ HS +HA  HIPEAQ AFK+LMIH +LQ A RIAFRCVLHRCG+
Sbjct:   67 SGVHEHSTRHATGHIPEAQCAFKILMIHEVLQFALRIAFRCVLHRCGN 114          
BLAST of mRNA_E-siliculosus-1a_F_contig13891.2306.1 vs. uniprot
Match: B8CEF4_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CEF4_THAPS)

HSP 1 Score: 72.0 bits (175), Expect = 1.790e-15
Identity = 35/47 (74.47%), Postives = 38/47 (80.85%), Query Frame = 0
Query:    1 SGVNRHSDKHAPRHIPEAQDAFKVLMIHWILQVARRIAFRCVLHRCG 47
            SGV+ HSDKHA  H P+AQ AFK LMIH +LQ A RIAFRCVLHRCG
Sbjct:   27 SGVSGHSDKHALGHYPKAQCAFKSLMIHEVLQFALRIAFRCVLHRCG 73          
BLAST of mRNA_E-siliculosus-1a_F_contig13891.2306.1 vs. uniprot
Match: K0S3C5_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S3C5_THAOC)

HSP 1 Score: 66.6 bits (161), Expect = 2.040e-13
Identity = 32/47 (68.09%), Postives = 36/47 (76.60%), Query Frame = 0
Query:    1 SGVNRHSDKHAPRHIPEAQDAFKVLMIHWILQVARRIAFRCVLHRCG 47
            SGV  HSDKHA  + P+AQ AFK+LMIH +LQ   RIA RCVLHRCG
Sbjct:   20 SGVQGHSDKHALGNYPKAQCAFKILMIHEVLQFVLRIAVRCVLHRCG 66          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig13891.2306.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A1E7F0G0_9STRA2.010e-1772.92Uncharacterized protein (Fragment) n=2 Tax=Fragila... [more]
A0A524MI88_9PROT1.520e-1672.92Uncharacterized protein n=1 Tax=Nitrosomonadales b... [more]
B8CEF4_THAPS1.790e-1574.47Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
K0S3C5_THAOC2.040e-1368.09Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig13891contigE-siliculosus-1a_F_contig13891:2..145 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig13891.2306.1mRNA_E-siliculosus-1a_F_contig13891.2306.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig13891 2..145 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig13891.2306.1 ID=prot_E-siliculosus-1a_F_contig13891.2306.1|Name=mRNA_E-siliculosus-1a_F_contig13891.2306.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=48bp
SGVNRHSDKHAPRHIPEAQDAFKVLMIHWILQVARRIAFRCVLHRCGS
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