mRNA_E-siliculosus-1a_F_contig13891.2306.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig13891.2306.1 vs. uniprot
Match: A0A1E7F0G0_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F0G0_9STRA) HSP 1 Score: 76.3 bits (186), Expect = 2.010e-17 Identity = 35/48 (72.92%), Postives = 41/48 (85.42%), Query Frame = 1
Query: 1 SGVNRHSDKHAPRHIPEAQDAFKVLMIHWILQVARRIAFRCVLHRCGS 144
SG++RHSDKHA IP+AQ AFK+LMIH +LQ A RIAFRCVLHRCG+
Sbjct: 2 SGIHRHSDKHATGKIPKAQCAFKILMIHEVLQFALRIAFRCVLHRCGN 49
BLAST of mRNA_E-siliculosus-1a_F_contig13891.2306.1 vs. uniprot
Match: A0A524MI88_9PROT (Uncharacterized protein n=1 Tax=Nitrosomonadales bacterium TaxID=2026761 RepID=A0A524MI88_9PROT) HSP 1 Score: 75.9 bits (185), Expect = 1.520e-16 Identity = 35/48 (72.92%), Postives = 40/48 (83.33%), Query Frame = 1
Query: 1 SGVNRHSDKHAPRHIPEAQDAFKVLMIHWILQVARRIAFRCVLHRCGS 144
SGV+ HS +HA HIPEAQ AFK+LMIH +LQ A RIAFRCVLHRCG+
Sbjct: 67 SGVHEHSTRHATGHIPEAQCAFKILMIHEVLQFALRIAFRCVLHRCGN 114
BLAST of mRNA_E-siliculosus-1a_F_contig13891.2306.1 vs. uniprot
Match: B8CEF4_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CEF4_THAPS) HSP 1 Score: 72.0 bits (175), Expect = 1.790e-15 Identity = 35/47 (74.47%), Postives = 38/47 (80.85%), Query Frame = 1
Query: 1 SGVNRHSDKHAPRHIPEAQDAFKVLMIHWILQVARRIAFRCVLHRCG 141
SGV+ HSDKHA H P+AQ AFK LMIH +LQ A RIAFRCVLHRCG
Sbjct: 27 SGVSGHSDKHALGHYPKAQCAFKSLMIHEVLQFALRIAFRCVLHRCG 73
BLAST of mRNA_E-siliculosus-1a_F_contig13891.2306.1 vs. uniprot
Match: K0S3C5_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S3C5_THAOC) HSP 1 Score: 66.6 bits (161), Expect = 2.040e-13 Identity = 32/47 (68.09%), Postives = 36/47 (76.60%), Query Frame = 1
Query: 1 SGVNRHSDKHAPRHIPEAQDAFKVLMIHWILQVARRIAFRCVLHRCG 141
SGV HSDKHA + P+AQ AFK+LMIH +LQ RIA RCVLHRCG
Sbjct: 20 SGVQGHSDKHALGNYPKAQCAFKILMIHEVLQFVLRIAVRCVLHRCG 66
BLAST of mRNA_E-siliculosus-1a_F_contig13891.2306.1 vs. uniprot
Match: A0A2Z6SHB0_9GLOM (Uncharacterized protein n=1 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A2Z6SHB0_9GLOM) HSP 1 Score: 53.1 bits (126), Expect = 1.190e-7 Identity = 25/41 (60.98%), Postives = 32/41 (78.05%), Query Frame = -1
Query: 13 MKNAAKCDTSCDLQNPVNHQNFERILRFRDM-PGSMLVGVS 132
MKN AKCDT C+LQNPVNH+ FER LR + + PG + +GV+
Sbjct: 1 MKNVAKCDTWCELQNPVNHRVFERKLRPKPLGPGHVCLGVT 41
BLAST of mRNA_E-siliculosus-1a_F_contig13891.2306.1 vs. uniprot
Match: R1EX34_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1EX34_EMIHU) HSP 1 Score: 53.1 bits (126), Expect = 1.360e-7 Identity = 29/42 (69.05%), Postives = 32/42 (76.19%), Query Frame = 3
Query: 18 LRQACSQAYPGSARCVQSFDDSLDSASRKTYRISLRSSSLWE 143
L + C +A PG A CVQ FDDSL+SA R TYRISLRSSSL E
Sbjct: 5 LEETCVRAEPGCAICVQRFDDSLNSAIRTTYRISLRSSSLRE 46
BLAST of mRNA_E-siliculosus-1a_F_contig13891.2306.1 vs. uniprot
Match: R1ESX1_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1ESX1_EMIHU) HSP 1 Score: 53.1 bits (126), Expect = 1.390e-7 Identity = 29/42 (69.05%), Postives = 32/42 (76.19%), Query Frame = 3
Query: 18 LRQACSQAYPGSARCVQSFDDSLDSASRKTYRISLRSSSLWE 143
L + C +A PG A CVQ FDDSL+SA R TYRISLRSSSL E
Sbjct: 5 LEETCVRAEPGCAICVQRFDDSLNSAIRTTYRISLRSSSLRE 46
BLAST of mRNA_E-siliculosus-1a_F_contig13891.2306.1 vs. uniprot
Match: A0A804KR64_MUSAM (Uncharacterized protein n=1 Tax=Musa acuminata subsp. malaccensis TaxID=214687 RepID=A0A804KR64_MUSAM) HSP 1 Score: 50.8 bits (120), Expect = 1.550e-7 Identity = 22/29 (75.86%), Postives = 25/29 (86.21%), Query Frame = -1
Query: 46 MKNAAKCDTSCDLQNPVNHQNFERILRFR 132
MKN AKCDT C+LQNPVNH+ FER+LR R
Sbjct: 1 MKNVAKCDTWCELQNPVNHRVFERMLRPR 29
BLAST of mRNA_E-siliculosus-1a_F_contig13891.2306.1 vs. uniprot
Match: R1D6I6_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1D6I6_EMIHU) HSP 1 Score: 53.1 bits (126), Expect = 1.800e-7 Identity = 29/42 (69.05%), Postives = 32/42 (76.19%), Query Frame = 3
Query: 18 LRQACSQAYPGSARCVQSFDDSLDSASRKTYRISLRSSSLWE 143
L + C +A PG A CVQ FDDSL+SA R TYRISLRSSSL E
Sbjct: 5 LEETCVRAEPGCAICVQRFDDSLNSAIRTTYRISLRSSSLRE 46
BLAST of mRNA_E-siliculosus-1a_F_contig13891.2306.1 vs. uniprot
Match: R1D5C4_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1D5C4_EMIHU) HSP 1 Score: 53.1 bits (126), Expect = 1.800e-7 Identity = 29/42 (69.05%), Postives = 32/42 (76.19%), Query Frame = 3
Query: 18 LRQACSQAYPGSARCVQSFDDSLDSASRKTYRISLRSSSLWE 143
L + C +A PG A CVQ FDDSL+SA R TYRISLRSSSL E
Sbjct: 5 LEETCVRAEPGCAICVQRFDDSLNSAIRTTYRISLRSSSLRE 46 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig13891.2306.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig13891.2306.1 >prot_E-siliculosus-1a_F_contig13891.2306.1 ID=prot_E-siliculosus-1a_F_contig13891.2306.1|Name=mRNA_E-siliculosus-1a_F_contig13891.2306.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=48bp SGVNRHSDKHAPRHIPEAQDAFKVLMIHWILQVARRIAFRCVLHRCGSback to top mRNA from alignment at E-siliculosus-1a_F_contig13891:2..145- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig13891.2306.1 ID=mRNA_E-siliculosus-1a_F_contig13891.2306.1|Name=mRNA_E-siliculosus-1a_F_contig13891.2306.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=144bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig13891:2..145- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig13891:2..145- >mRNA_E-siliculosus-1a_F_contig13891.2306.1 ID=mRNA_E-siliculosus-1a_F_contig13891.2306.1|Name=mRNA_E-siliculosus-1a_F_contig13891.2306.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=288bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig13891:2..145- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |