mRNA_E-siliculosus-1a_F_contig13891.2306.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig13891.2306.1
Unique NamemRNA_E-siliculosus-1a_F_contig13891.2306.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig13891.2306.1 vs. uniprot
Match: A0A1E7F0G0_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F0G0_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 2.010e-17
Identity = 35/48 (72.92%), Postives = 41/48 (85.42%), Query Frame = 1
Query:    1 SGVNRHSDKHAPRHIPEAQDAFKVLMIHWILQVARRIAFRCVLHRCGS 144
            SG++RHSDKHA   IP+AQ AFK+LMIH +LQ A RIAFRCVLHRCG+
Sbjct:    2 SGIHRHSDKHATGKIPKAQCAFKILMIHEVLQFALRIAFRCVLHRCGN 49          
BLAST of mRNA_E-siliculosus-1a_F_contig13891.2306.1 vs. uniprot
Match: A0A524MI88_9PROT (Uncharacterized protein n=1 Tax=Nitrosomonadales bacterium TaxID=2026761 RepID=A0A524MI88_9PROT)

HSP 1 Score: 75.9 bits (185), Expect = 1.520e-16
Identity = 35/48 (72.92%), Postives = 40/48 (83.33%), Query Frame = 1
Query:    1 SGVNRHSDKHAPRHIPEAQDAFKVLMIHWILQVARRIAFRCVLHRCGS 144
            SGV+ HS +HA  HIPEAQ AFK+LMIH +LQ A RIAFRCVLHRCG+
Sbjct:   67 SGVHEHSTRHATGHIPEAQCAFKILMIHEVLQFALRIAFRCVLHRCGN 114          
BLAST of mRNA_E-siliculosus-1a_F_contig13891.2306.1 vs. uniprot
Match: B8CEF4_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CEF4_THAPS)

HSP 1 Score: 72.0 bits (175), Expect = 1.790e-15
Identity = 35/47 (74.47%), Postives = 38/47 (80.85%), Query Frame = 1
Query:    1 SGVNRHSDKHAPRHIPEAQDAFKVLMIHWILQVARRIAFRCVLHRCG 141
            SGV+ HSDKHA  H P+AQ AFK LMIH +LQ A RIAFRCVLHRCG
Sbjct:   27 SGVSGHSDKHALGHYPKAQCAFKSLMIHEVLQFALRIAFRCVLHRCG 73          
BLAST of mRNA_E-siliculosus-1a_F_contig13891.2306.1 vs. uniprot
Match: K0S3C5_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S3C5_THAOC)

HSP 1 Score: 66.6 bits (161), Expect = 2.040e-13
Identity = 32/47 (68.09%), Postives = 36/47 (76.60%), Query Frame = 1
Query:    1 SGVNRHSDKHAPRHIPEAQDAFKVLMIHWILQVARRIAFRCVLHRCG 141
            SGV  HSDKHA  + P+AQ AFK+LMIH +LQ   RIA RCVLHRCG
Sbjct:   20 SGVQGHSDKHALGNYPKAQCAFKILMIHEVLQFVLRIAVRCVLHRCG 66          
BLAST of mRNA_E-siliculosus-1a_F_contig13891.2306.1 vs. uniprot
Match: A0A2Z6SHB0_9GLOM (Uncharacterized protein n=1 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A2Z6SHB0_9GLOM)

HSP 1 Score: 53.1 bits (126), Expect = 1.190e-7
Identity = 25/41 (60.98%), Postives = 32/41 (78.05%), Query Frame = -1
Query:   13 MKNAAKCDTSCDLQNPVNHQNFERILRFRDM-PGSMLVGVS 132
            MKN AKCDT C+LQNPVNH+ FER LR + + PG + +GV+
Sbjct:    1 MKNVAKCDTWCELQNPVNHRVFERKLRPKPLGPGHVCLGVT 41          
BLAST of mRNA_E-siliculosus-1a_F_contig13891.2306.1 vs. uniprot
Match: R1EX34_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1EX34_EMIHU)

HSP 1 Score: 53.1 bits (126), Expect = 1.360e-7
Identity = 29/42 (69.05%), Postives = 32/42 (76.19%), Query Frame = 3
Query:   18 LRQACSQAYPGSARCVQSFDDSLDSASRKTYRISLRSSSLWE 143
            L + C +A PG A CVQ FDDSL+SA R TYRISLRSSSL E
Sbjct:    5 LEETCVRAEPGCAICVQRFDDSLNSAIRTTYRISLRSSSLRE 46          
BLAST of mRNA_E-siliculosus-1a_F_contig13891.2306.1 vs. uniprot
Match: R1ESX1_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1ESX1_EMIHU)

HSP 1 Score: 53.1 bits (126), Expect = 1.390e-7
Identity = 29/42 (69.05%), Postives = 32/42 (76.19%), Query Frame = 3
Query:   18 LRQACSQAYPGSARCVQSFDDSLDSASRKTYRISLRSSSLWE 143
            L + C +A PG A CVQ FDDSL+SA R TYRISLRSSSL E
Sbjct:    5 LEETCVRAEPGCAICVQRFDDSLNSAIRTTYRISLRSSSLRE 46          
BLAST of mRNA_E-siliculosus-1a_F_contig13891.2306.1 vs. uniprot
Match: A0A804KR64_MUSAM (Uncharacterized protein n=1 Tax=Musa acuminata subsp. malaccensis TaxID=214687 RepID=A0A804KR64_MUSAM)

HSP 1 Score: 50.8 bits (120), Expect = 1.550e-7
Identity = 22/29 (75.86%), Postives = 25/29 (86.21%), Query Frame = -1
Query:   46 MKNAAKCDTSCDLQNPVNHQNFERILRFR 132
            MKN AKCDT C+LQNPVNH+ FER+LR R
Sbjct:    1 MKNVAKCDTWCELQNPVNHRVFERMLRPR 29          
BLAST of mRNA_E-siliculosus-1a_F_contig13891.2306.1 vs. uniprot
Match: R1D6I6_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1D6I6_EMIHU)

HSP 1 Score: 53.1 bits (126), Expect = 1.800e-7
Identity = 29/42 (69.05%), Postives = 32/42 (76.19%), Query Frame = 3
Query:   18 LRQACSQAYPGSARCVQSFDDSLDSASRKTYRISLRSSSLWE 143
            L + C +A PG A CVQ FDDSL+SA R TYRISLRSSSL E
Sbjct:    5 LEETCVRAEPGCAICVQRFDDSLNSAIRTTYRISLRSSSLRE 46          
BLAST of mRNA_E-siliculosus-1a_F_contig13891.2306.1 vs. uniprot
Match: R1D5C4_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1D5C4_EMIHU)

HSP 1 Score: 53.1 bits (126), Expect = 1.800e-7
Identity = 29/42 (69.05%), Postives = 32/42 (76.19%), Query Frame = 3
Query:   18 LRQACSQAYPGSARCVQSFDDSLDSASRKTYRISLRSSSLWE 143
            L + C +A PG A CVQ FDDSL+SA R TYRISLRSSSL E
Sbjct:    5 LEETCVRAEPGCAICVQRFDDSLNSAIRTTYRISLRSSSLRE 46          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig13891.2306.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1E7F0G0_9STRA2.010e-1772.92Uncharacterized protein (Fragment) n=2 Tax=Fragila... [more]
A0A524MI88_9PROT1.520e-1672.92Uncharacterized protein n=1 Tax=Nitrosomonadales b... [more]
B8CEF4_THAPS1.790e-1574.47Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
K0S3C5_THAOC2.040e-1368.09Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
A0A2Z6SHB0_9GLOM1.190e-760.98Uncharacterized protein n=1 Tax=Rhizophagus clarus... [more]
R1EX34_EMIHU1.360e-769.05Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
R1ESX1_EMIHU1.390e-769.05Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
A0A804KR64_MUSAM1.550e-775.86Uncharacterized protein n=1 Tax=Musa acuminata sub... [more]
R1D6I6_EMIHU1.800e-769.05Uncharacterized protein n=2 Tax=Emiliania huxleyi ... [more]
R1D5C4_EMIHU1.800e-769.05Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig13891contigE-siliculosus-1a_F_contig13891:2..145 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size144
Model size144
Exons1
Hectar predicted targeting categoryno signal peptide or anchor
Best eggNOG OGNA|NA|NA
Best tax levelBacillariophyta
EggNOG OGs2F8R5@1,2T9VT@2759,2XH3Y@2836
Seed eggNOG ortholog35128.Thaps30335
Seed ortholog evalue1.1e-10
Seed ortholog score71.6
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927900.809547-CDS-E-siliculosus-1a_F_contig13891:1..1451622927900.809547-CDS-E-siliculosus-1a_F_contig13891:1..145Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig13891 2..145 -
1696318729.770972-CDS-E-siliculosus-1a_F_contig13891:1..1451696318729.770972-CDS-E-siliculosus-1a_F_contig13891:1..145Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig13891 2..145 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig13891.2306.1prot_E-siliculosus-1a_F_contig13891.2306.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig13891 2..145 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig13891.2306.1

>prot_E-siliculosus-1a_F_contig13891.2306.1 ID=prot_E-siliculosus-1a_F_contig13891.2306.1|Name=mRNA_E-siliculosus-1a_F_contig13891.2306.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=48bp
SGVNRHSDKHAPRHIPEAQDAFKVLMIHWILQVARRIAFRCVLHRCGS
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mRNA from alignment at E-siliculosus-1a_F_contig13891:2..145-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig13891.2306.1 ID=mRNA_E-siliculosus-1a_F_contig13891.2306.1|Name=mRNA_E-siliculosus-1a_F_contig13891.2306.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=144bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig13891:2..145- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
AGTGGTGTCAACAGACACTCCGACAAGCATGCTCCCAGGCATATCCCGGA AGCGCAAGATGCGTTCAAAGTTTTGATGATTCACTGGATTCTGCAAGTCG CAAGACGTATCGCATTTCGCTGCGTTCTTCATCGTTGTGGGAGC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig13891:2..145-

>mRNA_E-siliculosus-1a_F_contig13891.2306.1 ID=mRNA_E-siliculosus-1a_F_contig13891.2306.1|Name=mRNA_E-siliculosus-1a_F_contig13891.2306.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=288bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig13891:2..145- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
AGTGGTGTCAACAGACACTCCGACAAGCATGCTCCCAGGCATATCCCGGA
AGCGCAAGATGCGTTCAAAGTTTTGATGATTCACTGGATTCTGCAAGTCG
CAAGACGTATCGCATTTCGCTGCGTTCTTCATCGTTGTGGGAGCAGTGGT
GTCAACAGACACTCCGACAAGCATGCTCCCAGGCATATCCCGGAAGCGCA
AGATGCGTTCAAAGTTTTGATGATTCACTGGATTCTGCAAGTCGCAAGAC
GTATCGCATTTCGCTGCGTTCTTCATCGTTGTGGGAGC
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