prot_E-siliculosus-1a_F_contig1373.2232.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig1373.2232.1
Unique Nameprot_E-siliculosus-1a_F_contig1373.2232.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length244
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1373.2232.1 vs. uniprot
Match: D7FNJ2_ECTSI (Clathrin light chain n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNJ2_ECTSI)

HSP 1 Score: 344 bits (883), Expect = 4.270e-117
Identity = 219/243 (90.12%), Postives = 220/243 (90.53%), Query Frame = 0 
Query:    1 MQEPAAYDLGGXXXXXXXXXXXXDQFGVVGDGEQFGXXXXXXEGXXXLXXXXXXXXXGDQFEGVPLQASSTPYQPKPTDPYSLEEAAGVMEEAQSQFDAVVKERAEKEAAKAAEVKRLAEEELDGFYDGRTDEVARRQARSREQEETFLKGVSASIEESTSNPWARICDLVDLKKPVISAKSSFSAGAXXXXXXXXXXSRKGSATAQSGMEEEDVFRATEKMRSLIIQMKADTAESNAGGDTG 243
            MQE AAYDLGG            DQFGVVGDGEQFG  XXXXEG XX XXXXXXX  GD FEGVPLQASSTPYQPKPTDP SLEEAAGVMEEAQSQFDAVVKERAEKEAAKAAEVKRLAEEELDGFYDGRTDEVARRQARSREQEETFLKGVSASIEESTSNPWARICDLVDLKKPVISAKSSFSAGA XXXXXXXXX RKGSATAQSGMEEE+VFRATEKMRSLIIQMKADTAESNAGGDTG
Sbjct:   43 MQETAAYDLGGGGGG--------DQFGVVGDGEQFGGGXXXXEGLXXXXXXXXXX--GDHFEGVPLQASSTPYQPKPTDPCSLEEAAGVMEEAQSQFDAVVKERAEKEAAKAAEVKRLAEEELDGFYDGRTDEVARRQARSREQEETFLKGVSASIEESTSNPWARICDLVDLKKPVISAKSSFSAGAGXXXXXXXXXXRKGSATAQSGMEEEEVFRATEKMRSLIIQMKADTAESNAGGDTG 275
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1373.2232.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FNJ2_ECTSI4.270e-11790.12Clathrin light chain n=2 Tax=Ectocarpus TaxID=2879... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 90..122
NoneNo IPR availablePANTHERPTHR10639:SF7CLATHRIN LIGHT CHAINcoord: 67..182
IPR000996Clathrin light chainPFAMPF01086Clathrin_lg_chcoord: 94..175
e-value: 1.3E-11
score: 45.1
IPR000996Clathrin light chainPANTHERPTHR10639CLATHRIN LIGHT CHAINcoord: 67..182

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1373contigE-siliculosus-1a_F_contig1373:8533..11309 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1373.2232.1mRNA_E-siliculosus-1a_F_contig1373.2232.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig1373 8419..11998 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig1373.2232.1 ID=prot_E-siliculosus-1a_F_contig1373.2232.1|Name=mRNA_E-siliculosus-1a_F_contig1373.2232.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=244bp
MQEPAAYDLGGGGGGGGGGGGGGDQFGVVGDGEQFGGGGGGGEGGGGLGG
GGLGGGGGDQFEGVPLQASSTPYQPKPTDPYSLEEAAGVMEEAQSQFDAV
VKERAEKEAAKAAEVKRLAEEELDGFYDGRTDEVARRQARSREQEETFLK
GVSASIEESTSNPWARICDLVDLKKPVISAKSSFSAGAGASGGGGGGGSR
KGSATAQSGMEEEDVFRATEKMRSLIIQMKADTAESNAGGDTG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000996Clathrin_L-chain