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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1373.2232.1 vs. uniprot
Match: D7FNJ2_ECTSI (Clathrin light chain n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNJ2_ECTSI) HSP 1 Score: 412 bits (1058), Expect = 1.920e-139 Identity = 257/281 (91.46%), Postives = 258/281 (91.81%), Query Frame = 1
Query: 1 DPFFPDATGGSSGEAADPGAAASAGFVDAGSPPPVAYGMQEPAAYDLGGXXXXXXXXXXXXDQFGVVGDGEQFGXXXXXXEGXXXLXXXXXXXXXGDQFEGVPLQASSTPYQPKPTDPYSLEEAAGVMEEAQSQFDAVVKERAEKEAAKAAEVKRLAEEELDGFYDGRTDEVARRQARSREQEETFLKGVSASIEESTSNPWARICDLVDLKKPVISAKSSFSAGAXXXXXXXXXXSRKGSATAQSGMEEEDVFRATEKMRSLIIQMKADTAESNAGGDTG 843
DPFFPDATGGSSGEAADPGAAASAGFVDAGSPPPVAYGMQE AAYDLGG DQFGVVGDGEQFG XXXXEG XX XXXXXXX GD FEGVPLQASSTPYQPKPTDP SLEEAAGVMEEAQSQFDAVVKERAEKEAAKAAEVKRLAEEELDGFYDGRTDEVARRQARSREQEETFLKGVSASIEESTSNPWARICDLVDLKKPVISAKSSFSAGA XXXXXXXXX RKGSATAQSGMEEE+VFRATEKMRSLIIQMKADTAESNAGGDTG
Sbjct: 5 DPFFPDATGGSSGEAADPGAAASAGFVDAGSPPPVAYGMQETAAYDLGGGGGG--------DQFGVVGDGEQFGGGXXXXEGLXXXXXXXXXX--GDHFEGVPLQASSTPYQPKPTDPCSLEEAAGVMEEAQSQFDAVVKERAEKEAAKAAEVKRLAEEELDGFYDGRTDEVARRQARSREQEETFLKGVSASIEESTSNPWARICDLVDLKKPVISAKSSFSAGAGXXXXXXXXXXRKGSATAQSGMEEEEVFRATEKMRSLIIQMKADTAESNAGGDTG 275
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 732 |
| Model size | 1535 |
| Exons | 4 |
| Ec32 ortholog | Ec-01_005240.1 |
| Ec32 ortholog description | Clathrin light chain |
| Hectar predicted targeting category | other localisation |
| BRITE | ko00000,ko04147 |
| Best eggNOG OG | NA|NA|NA |
| Best tax level | Eukaryota |
| COG Functional cat. | Q |
| EggNOG OGs | KOG2512@1,KOG2512@2759 |
| EggNOG free text desc. | post-chaperonin tubulin folding pathway |
| KEGG ko | ko:K18272 |
| Seed eggNOG ortholog | 112098.XP_008607785.1 |
| Seed ortholog evalue | 2.6e-07 |
| Seed ortholog score | 62.8 |
| Taxonomic scope | Eukaryota |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1373.2232.1 >prot_E-siliculosus-1a_F_contig1373.2232.1 ID=prot_E-siliculosus-1a_F_contig1373.2232.1|Name=mRNA_E-siliculosus-1a_F_contig1373.2232.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=244bp
MQEPAAYDLGGGGGGGGGGGGGGDQFGVVGDGEQFGGGGGGGEGGGGLGG
GGLGGGGGDQFEGVPLQASSTPYQPKPTDPYSLEEAAGVMEEAQSQFDAV
VKERAEKEAAKAAEVKRLAEEELDGFYDGRTDEVARRQARSREQEETFLK
GVSASIEESTSNPWARICDLVDLKKPVISAKSSFSAGAGASGGGGGGGSR
KGSATAQSGMEEEDVFRATEKMRSLIIQMKADTAESNAGGDTG* back to topmRNA from alignment at E-siliculosus-1a_F_contig1373:8419..11998+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1373.2232.1 ID=mRNA_E-siliculosus-1a_F_contig1373.2232.1|Name=mRNA_E-siliculosus-1a_F_contig1373.2232.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3580bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1373:8419..11998+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GACCCGTTTTTCCCGGACGCCACCGGGGGCAGCAGCGGCGAGGCCGCGGA
CCCCGGGGCGGCAGCGTCTGCCGGTTTTGTTGACGCGGGCTCACCGCCGC
CGGTAGCGTACGGCATGCAGGAACCCGCAGCGTACGACCTCGGCGGGGGC
GGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGGGACCAGTTTGGAGTAGT
CGGTGACGGCGAGCAATTCGGAGGTGGGGGCGGCGGAGGAGAAGGAGGAG
GAGGACTGGGAGGAGGAGGACTGGGAGGAGGCGGGGGCGACCAGTTCGAG
GGGGTGCCGCTGCAGGTGGGTAACGGGGACAAGGGTCGAAGAGTACCCGC
TTTTGCTGTGTGAGCGTTGCGGTAGTGGCTACGGTACGCCATTGTATGCA
TGGGAGCGAACGAGACACGGAAAACGATGTTGCCCCGAGGTTGTGGTGGT
CCGCAACGATTCACCCCTACTATGGGTGGAGGCGACGCCCGTGGCGTCCG
TCTGCGAGAAGACCGCGGAAGAAAGAGAGAGGAGATGCGTGTAGAGAGGG
AGATTTGGAGACAGAAAGGGATCGACGGAGACAAACGTCACCCTGTATAC
CGTACTCTGCTCAGGGCTGGCAGGGGCGGGATTCGCCAAGCGCCATGTAC
TATGCACGCCCCGGAGCCCCAACTCTAGCAAGGAGGAGGGGAGTTCGGGT
CATCGAAGAAACGAGTCCCCCGAGACCAATATATCCCCGCGGGGGTGTTG
GACAATGTGGTTTACCCCTACACATTTCCCACTGGTTTCCCTGTCCTGTC
TCACTCGCGATGTTGCGCCGAGCCAACCTAGCCAGCATGTACGAACAACC
ATATCTCAGCAACCGCATGATACAGCAGCCGGGGAAACTTGTGGGCTCCG
ATCGAGAGGCCCGCACGGGTATTTGTTTCTGTTGTACATGTAGTTGAGAC
TGACGTCAGCGTTGATTACTAAGATCTTTGATGGTTTTGCCCACACGTTG
TTTTGCTGCCCCACCAATTTTTTTTTATCAGTCTTCGACCACGCACTGCT
GTGGATCCTTGAGTTGAGATCTCTCCTGACGCCACGCACAACATCACCAT
CAAAGTGTCATGCGGTGCCTTGGCAGCATTCATTTGCAACATAACAAATC
ACGCCCACCCAGGGCTAACTCTAACAGGGCGGGGGGAAGGACAGGACTAT
TTTATCCCCAATTTTTTTCAGCCCTGAGACCTATAGAAGCCGAAACTCAA
AAAGTTTCTGTCACGCCGAGAGTCATACTGTTGTGAGTGCGGCTACTCTC
CGCCCCCCCCTTCCGACAACTCTAGGCTGAGCACGGTGTTTTGGGTCTGG
GTAGAAAATTGAGGCAATTCGCGATCCCCCATGCCCCGCGGTCTCTCTCT
CTCTCTCTCTCTCTCTCTTAGGCGTCGTCGACGCCGTACCAGCCAAAACC
CACGGACCCATACAGCCTCGAGGAGGCGGCCGGAGTAATGGAGGAGGCAC
AGAGCCAGTTTGACGCCGTGGTGAAGGAGAGGGCCGAAAAGGAGGCGGCC
AAGGCGGCTGAGGTGAAACGCCTGGCGGAGGAGGAGCTCGACGGATTTTA
CGACGGGCGCACGGACGAGGTGATGATGCTTTTTGTTTCGTCTCTCACAT
GTGTTGTAGGACGTCTGCCGCTGCTGGTCCCTGCCTCAAGAACTGCTGTG
GCCGAAGATAATATGAACCCGCTCACGTCTGAATCGAAGCGCCGCGTGCA
ACATAACGAACGTTACAAATGCGTGCGCTCTCTTGGCCCCCTTCCCGTGC
CCTACCTCGAAGGTTGCGCGGAGGCAGGCCCGCAGCCGCGAACAGGAGGA
GACGTTCCTTAAGGGGGTGTCCGCCTCGATCGAGGAGTCCACTTCCAACC
CTTGGGCAAGGATATGCGACCTCGTAGATTTGAAGAAGCCGGTCATATCT
GCGAAATCCTCTTTCTCTGCTGGCGCTGGCGCTTCCGGAGGCGGAGGCGG
CGGCGGCAGCCGTAAGGGCTCTGCCACGGCGCAGAGTGGGATGGAGGAGG
AGGACGTTTTCAGGGCAACCGAAAAGATGCGATCGCTCATCATTCAGGTG
GGGTGGCGTGGGTGGAAGGATGGGTGTAGGACATAACTAACCGTTTCGGT
CGTTGTCGTCACTGTAGTTACTGTCGTCATCGATTTGTCCGATTTCTGGA
GGAGGTAGTTCTGTACGGTATCGCGTGGTCGTGCCTCGCGCTCTAGACGG
GTTTCATCCCCCCAGGTTGTTCTTTTCTCTCTTCTCTTCGGCTGTCGTTA
CAATACCGCAACCAAAGGGTGGGAGAGTCGTGTTTGCGGGTAGTGCGTGG
TGTGTATGTGCGTGGTAAGTGTACAAAATGTGATGTGTTTTCGTCACTAC
TGTTTTGTAGCTGGTGGTATGCTAGCTGGTGGTTTGCAACTAACCCCTCG
CTCGTCAGAGAGGGTAGTCGAAACACTTGAGAATCGCCACACCGAGCGTC
GCAACCCTCTGTCGGCTTCGTGCTGGAGGGTCGGTCCCCCATGCCATCTT
GTGGTGGCGTTTTTTCTGAGGTTAAGCTTGCCTTGTGCGCTGGCTTACAA
GTCGTTTCTGCTGTTTTGTGCATATTTACCCCGGTGTTATTTGGTGTTGT
TGAAAAGTTTCCACTAAATGTCAGTATGGGATGGCCCTTATTTCTACCCG
GGGTAATGTATCCATACACAGAGTAGTTTCAGTGCTCACCCGGGAAACCC
ATTGATCCTAGAATATAAGGTGTGTTGCTCACTCTGGGGTGCTTCCGTAC
CCAAACCCCTCCCCTCTGTCTCTCCCTCTTTCACCGTGGCCAGATGAAAG
CGGACACAGCCGAGAGTAACGCGGGCGGCGACACTGGATAAAGAGGAGTG
TGACAAGGAAAATAGAAACAACATAAGGACGGCAGTAGCCTGGGTTTGTA
AGCACCGAGGCTTACCGCCCCGGAGGCTAGTGTGTTTATCGTGTGCCGCC
CGGGTGGCGATGCGGCAACGTTCGGACGAACACGAAGTATATTCCCTACC
TAGTTCTTGTTGTGATGGTTTTGCTATGTGTTGCGCAGTTGCTTCGGTAG
GTCTGCGCTGGTTGCGTGCCCGCCCAGCCTGTCTGTCTGGATTCGCAAGT
CCTTCCTTTTTGTGGGAGTGAGTGCGTTAGACCTGCGCGTGTAATGCAGA
GATAGGGCGGTGTGATTGCGTGTGGAGGGGAGAAAAAATGCCCCAGTAAC
CCCCTGTCACTGTTGTGTTGGGTTGCTGCCGTGTTTTTTCGTTTCCAAAG
GCTTGATGAGGCACGTATGATTATGCTGATCATGCGCTGGGGTCATGCGT
GTACAGCGTGGGGAGGGTGTGGGGAGGGTGACACTCGAAGCTAAACACGA
CCGTCAACGGCGAGAGCATAGCGCGATAGAAGTACGTAATGCATAGTAGA
ACGAGATACCCCGGCGGGGTGGCATTTTTTTTCCTGTATCTGAGCCCGTT
GGCTAGTATCTATCGTGCCGCATAGCACGTAGTGTGTCCTCTCCTCCTGT
TGATTAACACAACGTCACGACGGCGTGGCG back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1373:8419..11998+ >mRNA_E-siliculosus-1a_F_contig1373.2232.1 ID=mRNA_E-siliculosus-1a_F_contig1373.2232.1|Name=mRNA_E-siliculosus-1a_F_contig1373.2232.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1464bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1373:8419..11998+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCAGGAACCCGCAGCGTACGACCTCGGCGGGGGCGGCGGCGGCGGCGG
CGGCGGCGGCGGCGGCGGGGACCAGTTTGGAGTAGTCGGTGACGGCGAGC
AATTCGGAGGTGGGGGCGGCGGAGGAGAAGGAGGAGGAGGACTGGGAGGA
GGAGGACTGGGAGGAGGCGGGGGCGACCAGTTCGAGGGGGTGCCGCTGCA
GATGCAGGAACCCGCAGCGTACGACCTCGGCGGGGGCGGCGGCGGCGGCG
GCGGCGGCGGCGGCGGCGGGGACCAGTTTGGAGTAGTCGGTGACGGCGAG
CAATTCGGAGGTGGGGGCGGCGGAGGAGAAGGAGGAGGAGGACTGGGAGG
AGGAGGACTGGGAGGAGGCGGGGGCGACCAGTTCGAGGGGGTGCCGCTGC
AGGCGTCGTCGACGCCGTACCAGCCAAAACCCACGGACCCATACAGCCTC
GAGGAGGCGGCCGGAGTAATGGAGGAGGCACAGAGCCAGTTTGACGCCGT
GGTGAAGGAGAGGGCCGAAAAGGAGGCGGCCAAGGCGGCTGAGGTGAAAC
GCCTGGCGGAGGAGGAGCTCGACGGATTTTACGACGGGCGCACGGACGAG
GCGTCGTCGACGCCGTACCAGCCAAAACCCACGGACCCATACAGCCTCGA
GGAGGCGGCCGGAGTAATGGAGGAGGCACAGAGCCAGTTTGACGCCGTGG
TGAAGGAGAGGGCCGAAAAGGAGGCGGCCAAGGCGGCTGAGGTGAAACGC
CTGGCGGAGGAGGAGCTCGACGGATTTTACGACGGGCGCACGGACGAGGT
TGCGCGGAGGCAGGCCCGCAGCCGCGAACAGGAGGAGACGTTCCTTAAGG
GGGTGTCCGCCTCGATCGAGGAGTCCACTTCCAACCCTTGGGCAAGGATA
TGCGACCTCGTAGATTTGAAGAAGCCGGTCATATCTGCGAAATCCTCTTT
CTCTGCTGGCGCTGGCGCTTCCGGAGGCGGAGGCGGCGGCGGCAGCCGTA
AGGGCTCTGCCACGGCGCAGAGTGGGATGGAGGAGGAGGACGTTTTCAGG
GCAACCGAAAAGATGCGATCGCTCATCATTCAGGTTGCGCGGAGGCAGGC
CCGCAGCCGCGAACAGGAGGAGACGTTCCTTAAGGGGGTGTCCGCCTCGA
TCGAGGAGTCCACTTCCAACCCTTGGGCAAGGATATGCGACCTCGTAGAT
TTGAAGAAGCCGGTCATATCTGCGAAATCCTCTTTCTCTGCTGGCGCTGG
CGCTTCCGGAGGCGGAGGCGGCGGCGGCAGCCGTAAGGGCTCTGCCACGG
CGCAGAGTGGGATGGAGGAGGAGGACGTTTTCAGGGCAACCGAAAAGATG
CGATCGCTCATCATTCAGATGAAAGCGGACACAGCCGAGAGTAACGCGGG
CGGCGACACTGGATAAATGAAAGCGGACACAGCCGAGAGTAACGCGGGCG
GCGACACTGGATAA back to top
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