prot_E-siliculosus-1a_F_contig1370.2216.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig1370.2216.1
Unique Nameprot_E-siliculosus-1a_F_contig1370.2216.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length814
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1370.2216.1 vs. uniprot
Match: D8LE74_ECTSI (Leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE74_ECTSI)

HSP 1 Score: 591 bits (1524), Expect = 1.970e-191
Identity = 438/657 (66.67%), Postives = 442/657 (67.28%), Query Frame = 0 
Query:    1 STELAVAANNQARRSAVSAGTPVAMLRQSVAGSIDAVNDEDGPMVAKMAEEAGDGEVVEGSARIRIQPLDTRLRLHFKQTQGFSMRSRVNFGKTHMMASHPGPVNLSTAKLVESGMTYVEARKKIARATREAHQQFVREGEQQLAKEMSFRDVNERAKNAHTLGTATLTNKIERMHRRGRERQARQMLEWNEEAFQERQXXXXXXXXSSAYQLRKSSSRGRTVPIGDTPDHRHRTLATTAQEQTQATPSSSRQLLADSVPTGNCPSAKQPKGDTPGDRKPTNRLITTDLETRHTQQTVDSAGQPLGTHQEEAGVGIDAKDRDGARRKRKGGDSAGDSKDIAFVLRKLYTGGGLDAQQQGWKCMPTNLFNTLTMQLGTLSKINMPRNSLELLISLRNPNFSCAHMRSVGEINLSGNKLRELPEEAQRLTSLKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFGDXHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGNNMPHLAVPPLLKTSNGKDQCASWVKRWNRDKKREMWVNDVTGETSDVDPTSSSVNRSSNASAASVNSTLTVGTFPYNRRRNELAARGKRNEKQRWEAALNVSTGKVYYINNVNFSHVQAMPACMNRLGDMTRLVSLKLSQNKLRSLPSSI 657
            STELAV ANNQARRSAV AGTPV MLRQSVAGS+DA NDEDGPMVAKMAEEAGDGEV EGSARIRIQPLDTRLRLHFKQTQGFSMRSRVNFGKTHMMASHPGPVNLSTAKLVESGMTYVEARKKIARATREAHQQF REGEQQLAKEMSFRDVNERA+NAHTLGTATLTNKIERMHRRGRERQ                                                                                                                                                                                                     INMPRNSLELLISLRNPNFSCAHMRSVGEINLSGNKLRELPEEAQRLTSLKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   X XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGNNMPHLAVPPLLKTSNGKDQCASWVKRWNRDKKREMWVNDVTGETSDVDPTSSSVNRSSNASAASVNSTLTVGTFPYNRRRNELAARG       WEAALN+STGKVYYINNVNFSHVQAMPACMNRLGDMTRLVSLKLSQNKLRSLPS +
Sbjct:    2 STELAVTANNQARRSAVRAGTPVVMLRQSVAGSVDAANDEDGPMVAKMAEEAGDGEV-EGSARIRIQPLDTRLRLHFKQTQGFSMRSRVNFGKTHMMASHPGPVNLSTAKLVESGMTYVEARKKIARATREAHQQFAREGEQQLAKEMSFRDVNERAQNAHTLGTATLTNKIERMHRRGRERQ-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------INMPRNSLELLISLRNPNFSCAHMRSVGEINLSGNKLRELPEEAQRLTSLKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGNNMPHLAVPPLLKTSNGKDQCASWVKRWNRDKKREMWVNDVTGETSDVDPTSSSVNRSSNASAASVNSTLTVGTFPYNRRRNELAARGI----YEWEAALNISTGKVYYINNVNFSHVQAMPACMNRLGDMTRLVSLKLSQNKLRSLPSRL 456
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BLAST of mRNA_E-siliculosus-1a_F_contig1370.2216.1 vs. uniprot
Match: A0A836CM02_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM02_9STRA)

HSP 1 Score: 149 bits (376), Expect = 4.720e-33
Identity = 242/507 (47.73%), Postives = 291/507 (57.40%), Query Frame = 0 
Query:  332 DSAGDSKDIAFVLRKLYTGGGLDAQQQGWKCMPTNLFNTLTM--------------------QLGTLSKINMPRNSLELLISLRNPNFSCAHMRSVGEINLSGNKLRELPEEAQRLTSLKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFGDX---------HXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGNNMPHLAVPPLLKTSNGKDQCASWVKRWNRDKKREMWVNDVTGETSDVDPTSSSVNRSSNASAASVNSTLTVGTFPYNRRRNELAARGKRNEKQRWEAALNVSTGKVYYINNVNFSHVQAMPACMNRLGDMTRLVSLKLSQNKLRSLPSSICWCHNLEVLEANDNYLEKLPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLADPPAELLLLGMGAMLWECRKRHWMQVRGPPPVVRVHGFGIEAS 809
            D+  D+  +   +R+L T G LD  QQG   +P ++  TL +                    QLG L ++N+PRN L+ L+++ N   SCAH RSV ++NLSGN L  LP E  R  +L+T    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  FG+                                         D N+MPHLA+PP L+T+      A+   R   D   E   + + G                          L  G+  YN+ R ELA RG       W +  +  TG+V Y+NNVN     A+PACM+RLG +  L  LK ++N+LRSLP+S+C C                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX L DPPA LLL G  A+L+ECRKR++ Q +G PP V VH +GI+  
Sbjct:  157 DARADAAQLLHGVRRLLTAGVLDLPQQGLAALPPDVSTTLALXXXXXXXXXXXXXXPCSDLQQLGGLRRVNLPRNELKQLLTVDNAALSCAHFRSVTDMNLSGNGLTALPAEMGRCVALQTLRLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYAFGELKRLTSLDVSRCLEWLDVSSNMLSALPPTLPLMLALAHLDLDNNSMPHLAIPPALRTTEAGTDAAAAAARRGHDANCEPAEHCIAG--------------------------LQEGSSAYNKHRTELADRGI----FEWSSVPDPETGRVTYLNNVNGDRSDALPACMDRLGSLASLTCLKANRNRLRSLPASVCHCAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVDPPASLLLQGTDALLFECRKRYYAQQKGLPPAVGVHQYGIQGE 633
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1370.2216.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LE74_ECTSI1.970e-19166.67Leucine rich repeat protein n=1 Tax=Ectocarpus sil... [more]
A0A836CM02_9STRA4.720e-3347.73Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSMARTSM00364LRR_bac_2coord: 427..446
e-value: 19.0
score: 11.7
coord: 639..656
e-value: 400.0
score: 1.5
coord: 729..748
e-value: 76.0
score: 7.0
coord: 683..702
e-value: 510.0
score: 0.7
coord: 706..725
e-value: 49.0
score: 8.5
coord: 473..492
e-value: 95.0
score: 6.3
coord: 409..423
e-value: 560.0
score: 0.4
coord: 660..679
e-value: 51.0
score: 8.3
coord: 450..469
e-value: 580.0
score: 0.3
NoneNo IPR availablePANTHERPTHR16083LEUCINE RICH REPEAT CONTAINING PROTEINcoord: 632..781
NoneNo IPR availablePANTHERPTHR16083:SF18coord: 354..512
coord: 632..781
NoneNo IPR availablePANTHERPTHR16083LEUCINE RICH REPEAT CONTAINING PROTEINcoord: 354..512
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 372..772
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 473..496
e-value: 0.52
score: 19.4
coord: 637..660
e-value: 0.019
score: 24.1
coord: 752..775
e-value: 30.0
score: 9.4
coord: 427..449
e-value: 0.6
score: 19.2
coord: 729..750
e-value: 50.0
score: 7.5
coord: 404..426
e-value: 17.0
score: 11.4
coord: 683..706
e-value: 2.9
score: 16.9
coord: 450..472
e-value: 0.73
score: 18.9
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 409..463
e-value: 7.9E-8
score: 32.0
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 498..519
score: 6.272
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 452..474
score: 6.788
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 475..496
score: 7.435
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 754..775
score: 6.626
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 731..753
score: 6.511
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 685..706
score: 6.541
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 662..684
score: 5.64
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 406..427
score: 5.941
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 639..660
score: 7.104
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 708..729
score: 5.117
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 429..451
score: 7.45
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 605..780
e-value: 1.2E-32
score: 114.6
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 351..575
e-value: 2.2E-30
score: 107.1

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1370contigE-siliculosus-1a_F_contig1370:1860..11397 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1370.2216.1mRNA_E-siliculosus-1a_F_contig1370.2216.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig1370 1860..11397 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig1370.2216.1 ID=prot_E-siliculosus-1a_F_contig1370.2216.1|Name=mRNA_E-siliculosus-1a_F_contig1370.2216.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=814bp
STELAVAANNQARRSAVSAGTPVAMLRQSVAGSIDAVNDEDGPMVAKMAE
EAGDGEVVEGSARIRIQPLDTRLRLHFKQTQGFSMRSRVNFGKTHMMASH
PGPVNLSTAKLVESGMTYVEARKKIARATREAHQQFVREGEQQLAKEMSF
RDVNERAKNAHTLGTATLTNKIERMHRRGRERQARQMLEWNEEAFQERQQ
QQRKKEKSSAYQLRKSSSRGRTVPIGDTPDHRHRTLATTAQEQTQATPSS
SRQLLADSVPTGNCPSAKQPKGDTPGDRKPTNRLITTDLETRHTQQTVDS
AGQPLGTHQEEAGVGIDAKDRDGARRKRKGGDSAGDSKDIAFVLRKLYTG
GGLDAQQQGWKCMPTNLFNTLTMQLGTLSKINMPRNSLELLISLRNPNFS
CAHMRSVGEINLSGNKLRELPEEAQRLTSLKTLRLDNNKLSGLPDGLLNL
TSLTHLSLRHNNFSNLPNRFGDLHRLEKLDLGENMLKTLPPTMNLLTSLK
HLKLDGNNMPHLAVPPLLKTSNGKDQCASWVKRWNRDKKREMWVNDVTGE
TSDVDPTSSSVNRSSNASAASVNSTLTVGTFPYNRRRNELAARGKRNEKQ
RWEAALNVSTGKVYYINNVNFSHVQAMPACMNRLGDMTRLVSLKLSQNKL
RSLPSSICWCHNLEVLEANDNYLEKLPARLGEMKQLRHLRLDVNCLTELP
SSMVQLDRLEELCLTSNFFATFPDFAMKMSGLKKLLLGNNQLKKLPYSVG
FLTSLKTLQLYNNPLADPPAELLLLGMGAMLWECRKRHWMQVRGPPPVVR
VHGFGIEASGGNM*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf
IPR001611Leu-rich_rpt
IPR003591Leu-rich_rpt_typical-subtyp