prot_E-siliculosus-1a_F_contig1369.2198.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig1369.2198.1
Unique Nameprot_E-siliculosus-1a_F_contig1369.2198.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length232
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1369.2198.1 vs. uniprot
Match: D7FXG5_ECTSI (Arginine/serine-rich splicing factor 6 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXG5_ECTSI)

HSP 1 Score: 342 bits (877), Expect = 5.440e-117
Identity = 166/167 (99.40%), Postives = 166/167 (99.40%), Query Frame = 0 
Query:    1 MTNRIYIGHLSPHTRDRDLDRAFGRYGRIEKIDVRMGFAFIEFEDRRDAEDAVAEMDGREFDGARIVVQPGRGHRPNGPKFATRRTEHRITVEGLDSHTSWQDLKDFGRQAGQVLYSDVFFRQGRRWGVVEYVSRDDMKTAIRTLDDTRLGGKYIRVREENSGRDSR 167
            MTNRIYIGHLSPHTRDRDLDRAFGRYGRIEKIDVRMGFAFIEFEDRRDAEDAVAEMDGREFDGARIVVQPGRGHRPNGPKFATRRTEHRITVEGLDSHTSWQDLKDFGRQAGQVLYSDVFFRQGRRWGVVEYVSRDDMK AIRTLDDTRLGGKYIRVREENSGRDSR
Sbjct:    1 MTNRIYIGHLSPHTRDRDLDRAFGRYGRIEKIDVRMGFAFIEFEDRRDAEDAVAEMDGREFDGARIVVQPGRGHRPNGPKFATRRTEHRITVEGLDSHTSWQDLKDFGRQAGQVLYSDVFFRQGRRWGVVEYVSRDDMKAAIRTLDDTRLGGKYIRVREENSGRDSR 167
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BLAST of mRNA_E-siliculosus-1a_F_contig1369.2198.1 vs. uniprot
Match: A0A6P8RXC7_GEOSA (serine/arginine-rich splicing factor 5-like isoform X1 n=4 Tax=Gymnophiona TaxID=8445 RepID=A0A6P8RXC7_GEOSA)

HSP 1 Score: 158 bits (400), Expect = 2.180e-44
Identity = 86/186 (46.24%), Postives = 116/186 (62.37%), Query Frame = 0 
Query:    4 RIYIGHLSPHTRDRDLDRAFGRYGRIEKIDVRMGFAFIEFEDRRDAEDAVAEMDGREFDGARIVVQP-----GRGHRPNGPKFATR-----------------RTEHRITVEGLDSHTSWQDLKDFGRQAGQVLYSDVFFRQGRRWGVVEYVSRDDMKTAIRTLDDTRLGGKYIRVREENSGRDSR 167
            R++IG LSPH R+RD+++ F  YGRI++I+++ GF F+EFED RDA+DAV E++G+E    R+ ++      GRG    G +F TR                 RT+HRI VE L S  SWQDLKDF R+AG+V Y D   R  +  GVVE+ S DDMK A+ TLD T L G+ I++ E+N  R SR
Sbjct:    5 RVFIGRLSPHARERDVEKFFKGYGRIKEINLKNGFGFVEFEDHRDADDAVYELNGKELCNERVTIEHARNRRGRGRFGGGGRFPTRFSYQYRSSGSSRYGPPLRTKHRIIVENLSSRVSWQDLKDFMRKAGEVTYVDAH-RSNKNEGVVEFASFDDMKNALDTLDGTELNGRKIKLIEDNKKRRSR 189
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BLAST of mRNA_E-siliculosus-1a_F_contig1369.2198.1 vs. uniprot
Match: A0A7S0Q5F1_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0Q5F1_9EUKA)

HSP 1 Score: 152 bits (383), Expect = 2.590e-43
Identity = 69/140 (49.29%), Postives = 103/140 (73.57%), Query Frame = 0 
Query:    4 RIYIGHLSPHTRDRDLDRAFGRYGRIEKIDVRMGFAFIEFEDRRDAEDAVAEMDGREFDGARIVVQPGRGHRPNGPKFATRRTEHRITVEGLDSHTSWQDLKDFGRQAGQVLYSDVFFRQGRRWGVVEYVSRDDMKTAIR 143
            R+Y+G LS +TR+RDL+R F RYGR+E++D++ GFAF+EF D RDA+DAV +M GR+ DG RI V+  +G R  G +   + +  RI VEGLD  TSWQDLKDFGR+ G ++Y+DV+    +++G++EY  ++D + A++
Sbjct:    6 RVYVGGLSSYTRERDLERVFDRYGRVERVDLKRGFAFVEFSDDRDADDAVYDMHGRDLDGRRITVEHAKGGR--GARGPAKGSGFRIKVEGLDMRTSWQDLKDFGRKVGDIMYTDVWVDGSKKFGIMEYGRKEDYEEALK 143
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BLAST of mRNA_E-siliculosus-1a_F_contig1369.2198.1 vs. uniprot
Match: A0A068RLW3_9FUNG (Alternative splicing factor asf n=2 Tax=Lichtheimia TaxID=688353 RepID=A0A068RLW3_9FUNG)

HSP 1 Score: 150 bits (379), Expect = 3.470e-41
Identity = 78/169 (46.15%), Postives = 112/169 (66.27%), Query Frame = 0 
Query:    1 MTNRIYIGHLSPHTRDRDLDRAFGRYGRIEKIDVRMGFAFIEFEDRRDAEDAVAEMDGREFDGARIVVQPGRGHRPNGP--KFATRRTEHRITVEGLDSHTSWQDLKDFGRQAGQVLYSDVFFRQGRRWGVVEYVSRDDMKTAIRTLDDTRLGGKYIRVREENSGRDSR 167
            M+ R+YIG L+   RDRDL+R F  YG I +I+++ G+ F+EF+D RDAED V +  G+EF G RI+V+  RG R      +   RR+++R+TVE + S TSWQDLKD  R+AG+V ++DV  R     GVVE+  R DM+ A++ LDD+ L G+ +R+ E+ S R  R
Sbjct:    1 MSTRVYIGRLARDARDRDLERLFKSYGEIREINIKSGYGFVEFKDPRDAEDVVYDFHGKEFLGERIIVEMARGARRGREDRRRVDRRSDYRLTVENIPSGTSWQDLKDLMRKAGEVTFADVI-RSRPGEGVVEFAHRSDMEYALKKLDDSELNGQRVRLFEDTSRRRGR 168
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BLAST of mRNA_E-siliculosus-1a_F_contig1369.2198.1 vs. uniprot
Match: A0A6A4SRR9_SCOMX (Uncharacterized protein n=1 Tax=Scophthalmus maximus TaxID=52904 RepID=A0A6A4SRR9_SCOMX)

HSP 1 Score: 147 bits (372), Expect = 5.820e-41
Identity = 81/183 (44.26%), Postives = 113/183 (61.75%), Query Frame = 0 
Query:    4 RIYIGHLSPHTRDRDLDRAFGRYGRIEKIDVRMGFAFIEFEDRRDAEDAVAEMDGREFDGARIVVQPGRG--------------------HRPNGPKFAT-RRTEHRITVEGLDSHTSWQDLKDFGRQAGQVLYSDVFFRQGR-RWGVVEYVSRDDMKTAIRTLDDTRLGGKYIRVREENSGR 164
            R+Y+G LS H R++D+ R F  YG++ +ID++ G+ F+EFED RDA+DAV E++G+E  G R+V++  RG                    +RP   K+    RTEHR+ VE L S  SWQDLKDF RQAG+V Y+D    +GR   GV+E+ SR D+K AI  LD T + G+ IR+ E+ S R
Sbjct:    3 RVYVGKLSYHVREKDMQRFFSGYGKLLEIDLKNGYGFVEFEDMRDADDAVYELNGKELCGERVVIEHARGPRRDGHGGSHGGRSSGYSSWNRPTRDKYGPPMRTEHRLIVENLSSKCSWQDLKDFMRQAGEVTYADA--HKGRANEGVIEFRSRSDLKRAIEKLDGTDVNGRKIRLVEDKSRR 183
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BLAST of mRNA_E-siliculosus-1a_F_contig1369.2198.1 vs. uniprot
Match: A0A6P7IBI1_9TELE (serine/arginine-rich splicing factor 6-like isoform X1 n=3 Tax=Parambassis ranga TaxID=210632 RepID=A0A6P7IBI1_9TELE)

HSP 1 Score: 151 bits (381), Expect = 9.750e-41
Identity = 80/178 (44.94%), Postives = 113/178 (63.48%), Query Frame = 0 
Query:    4 RIYIGHLSPHTRDRDLDRAFGRYGRIEKIDVRMGFAFIEFEDRRDAEDAVAEMDGREFDGARIVVQPGRGHRPNGPKFATR----------------RTEHRITVEGLDSHTSWQDLKDFGRQAGQVLYSDVFFRQGR-RWGVVEYVSRDDMKTAIRTLDDTRLGGKYIRVREENSGR 164
            R+Y+G LS H R++D+ R F  YG++ ++D++ G+ F+EFED RDA+DAV E++G+E  G R+V++  RG R +G  +A R                RTEHR+ VE L S  SWQDLKDF RQAG+V Y+D    +GR   GV+E+ SR D+K AI  LD T + G+ IR+ E+   R
Sbjct:    3 RVYVGRLSYHVREKDIQRFFSGYGKLLEVDLKNGYGFVEFEDMRDADDAVYELNGKELCGERVVIEHARGPRRDGYGYAGRSSSWNRPGRDKYGPPVRTEHRLIVENLSSKCSWQDLKDFMRQAGEVTYADA--HKGRANEGVIEFRSRSDLKRAIEKLDGTDINGRKIRLVEDKHRR 178
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1369.2198.1 vs. uniprot
Match: A0A8D3DI69_SCOMX (Serine and arginine rich splicing factor 6b n=2 Tax=Scophthalmus maximus TaxID=52904 RepID=A0A8D3DI69_SCOMX)

HSP 1 Score: 147 bits (372), Expect = 1.070e-40
Identity = 81/183 (44.26%), Postives = 113/183 (61.75%), Query Frame = 0 
Query:    4 RIYIGHLSPHTRDRDLDRAFGRYGRIEKIDVRMGFAFIEFEDRRDAEDAVAEMDGREFDGARIVVQPGRG--------------------HRPNGPKFAT-RRTEHRITVEGLDSHTSWQDLKDFGRQAGQVLYSDVFFRQGR-RWGVVEYVSRDDMKTAIRTLDDTRLGGKYIRVREENSGR 164
            R+Y+G LS H R++D+ R F  YG++ +ID++ G+ F+EFED RDA+DAV E++G+E  G R+V++  RG                    +RP   K+    RTEHR+ VE L S  SWQDLKDF RQAG+V Y+D    +GR   GV+E+ SR D+K AI  LD T + G+ IR+ E+ S R
Sbjct:    3 RVYVGKLSYHVREKDMQRFFSGYGKLLEIDLKNGYGFVEFEDMRDADDAVYELNGKELCGERVVIEHARGPRRDGHGGSHGGRSSGYSSWNRPTRDKYGPPMRTEHRLIVENLSSKCSWQDLKDFMRQAGEVTYADA--HKGRANEGVIEFRSRSDLKRAIEKLDGTDVNGRKIRLVEDKSRR 183
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BLAST of mRNA_E-siliculosus-1a_F_contig1369.2198.1 vs. uniprot
Match: A0A7N9ASU1_9TELE (Serine/arginine-rich splicing factor 6-like n=2 Tax=Percomorphaceae TaxID=1489872 RepID=A0A7N9ASU1_9TELE)

HSP 1 Score: 149 bits (375), Expect = 1.110e-40
Identity = 79/181 (43.65%), Postives = 112/181 (61.88%), Query Frame = 0 
Query:    4 RIYIGHLSPHTRDRDLDRAFGRYGRIEKIDVRMGFAFIEFEDRRDAEDAVAEMDGREFDGARIVVQPGRGHRPNGPKFATR-------------------RTEHRITVEGLDSHTSWQDLKDFGRQAGQVLYSDVFFRQGR-RWGVVEYVSRDDMKTAIRTLDDTRLGGKYIRVREENSGR 164
            R+Y+G LS H R++D+ R F  YG++ +ID++ G+ F+EFED RDA+DAV E++G+E  G R++++  RG R +G  +  R                   RTEHR+ VE L S  SWQDLKDF RQAG+V Y+D    +GR   GV+E+ SR DMK A+  LD T + G+ IR+ E+   R
Sbjct:    3 RVYVGKLSYHVREKDIQRFFSGYGKLLEIDLKNGYGFVEFEDMRDADDAVYELNGKELCGERVIIEHARGPRRDGYGYGGRSGGYSSWNRSGRDKYGPPVRTEHRLIVENLSSRCSWQDLKDFMRQAGEVTYADA--HKGRANEGVIEFRSRSDMKRALEKLDGTDINGRKIRLVEDKPRR 181
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BLAST of mRNA_E-siliculosus-1a_F_contig1369.2198.1 vs. uniprot
Match: T1D6F1_9DIPT (Putative b52 (Fragment) n=1 Tax=Psorophora albipes TaxID=869069 RepID=T1D6F1_9DIPT)

HSP 1 Score: 149 bits (376), Expect = 1.640e-40
Identity = 79/174 (45.40%), Postives = 111/174 (63.79%), Query Frame = 0 
Query:    4 RIYIGHLSPHTRDRDLDRAFGRYGRIEKIDVRMGFAFIEFEDRRDAEDAVAEMDGREFDGARIVVQPGRGH-RPNGPKFATRR------------TEHRITVEGLDSHTSWQDLKDFGRQAGQVLYSDVFFRQGRRWGVVEYVSRDDMKTAIRTLDDTRLGGKYIRVREENSGR 164
            R+Y+G L    R+RDL+R F  YGRI +I ++ G+ F+EFED RDA+DAV EM+G++  G R+ ++P RG  R +G +    R            T+HR+ VE L S  SWQDLKD+ RQAG+V Y+D   R  +  GVVE+ +  +MK AI+ LDDT L G+ IR++E+  GR
Sbjct:    5 RVYVGGLPYDVRERDLERFFKGYGRITEILIKKGYGFVEFEDYRDADDAVYEMNGKKLLGERVTIEPARGTARGSGSRRERERRGGRSRYGPPLRTKHRLIVENLSSRISWQDLKDYMRQAGEVTYADAH-RDRKNEGVVEFATSSEMKAAIKQLDDTELNGRRIRLQEDRGGR 177
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BLAST of mRNA_E-siliculosus-1a_F_contig1369.2198.1 vs. uniprot
Match: A0A7S0DYD6_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0DYD6_9CRYP)

HSP 1 Score: 148 bits (373), Expect = 1.830e-40
Identity = 74/166 (44.58%), Postives = 107/166 (64.46%), Query Frame = 0 
Query:    4 RIYIGHLSPHTRDRDLDRAFGRYGRIEKIDVRMGFAFIEFEDRRDAEDAVAEMDGREFDGARIVVQPGRGHRPNGPKFATRRTEHRITVEGLDSHTSWQDLKDFGRQAGQVLYSDVFFRQGRRWGVVEYVSRDDMKTAIRTLDDTRLGGKYIRVRE--ENSGRDSR 167
            R+Y+GHLS   R+RDLD  F R+G+I  I ++ GFAF+E++   DAE AV +MDG   +G RI+V+  +     GPK  +    +R+  E L  +TSWQDLKDF R+AG+V+++DVF  +G R G++EY +RDDM+ A+  LD T L    +R+ +  E  G D R
Sbjct:   13 RVYVGHLSSRVRERDLDDEFSRFGKIRDISLKQGFAFVEYDHSEDAEYAVRKMDGVNLEGMRILVEFAKETPKRGPKGGS---GYRLYAENLSQNTSWQDLKDFARKAGKVIFTDVFSERGERLGIIEYATRDDMEEALYKLDGTELHRSKVRLVKDGERGGGDKR 175
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1369.2198.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXG5_ECTSI5.440e-11799.40Arginine/serine-rich splicing factor 6 n=2 Tax=Ect... [more]
A0A6P8RXC7_GEOSA2.180e-4446.24serine/arginine-rich splicing factor 5-like isofor... [more]
A0A7S0Q5F1_9EUKA2.590e-4349.29Hypothetical protein (Fragment) n=1 Tax=Coccolithu... [more]
A0A068RLW3_9FUNG3.470e-4146.15Alternative splicing factor asf n=2 Tax=Lichtheimi... [more]
A0A6A4SRR9_SCOMX5.820e-4144.26Uncharacterized protein n=1 Tax=Scophthalmus maxim... [more]
A0A6P7IBI1_9TELE9.750e-4144.94serine/arginine-rich splicing factor 6-like isofor... [more]
A0A8D3DI69_SCOMX1.070e-4044.26Serine and arginine rich splicing factor 6b n=2 Ta... [more]
A0A7N9ASU1_9TELE1.110e-4043.65Serine/arginine-rich splicing factor 6-like n=2 Ta... [more]
T1D6F1_9DIPT1.640e-4045.40Putative b52 (Fragment) n=1 Tax=Psorophora albipes... [more]
A0A7S0DYD6_9CRYP1.830e-4044.58Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 4..69
e-value: 5.2E-20
score: 82.5
coord: 89..158
e-value: 1.9E-9
score: 47.4
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 90..156
e-value: 1.2E-9
score: 37.9
coord: 5..66
e-value: 1.0E-15
score: 57.3
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 88..162
score: 10.906
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 3..73
score: 17.012
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 1..84
e-value: 1.6E-21
score: 78.3
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 87..161
e-value: 5.8E-18
score: 66.6
NoneNo IPR availablePANTHERPTHR23003:SF30SERINE/ARGININE-RICH-SPLICING FACTOR 5A-RELATEDcoord: 3..226
NoneNo IPR availablePANTHERPTHR23003RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEINcoord: 3..226
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 3..159

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1369contigE-siliculosus-1a_F_contig1369:7723..13116 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1369.2198.1mRNA_E-siliculosus-1a_F_contig1369.2198.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig1369 7615..16991 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig1369.2198.1 ID=prot_E-siliculosus-1a_F_contig1369.2198.1|Name=mRNA_E-siliculosus-1a_F_contig1369.2198.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=232bp
MTNRIYIGHLSPHTRDRDLDRAFGRYGRIEKIDVRMGFAFIEFEDRRDAE
DAVAEMDGREFDGARIVVQPGRGHRPNGPKFATRRTEHRITVEGLDSHTS
WQDLKDFGRQAGQVLYSDVFFRQGRRWGVVEYVSRDDMKTAIRTLDDTRL
GGKYIRVREENSGRDSRSRSRSRSRRRSRSYSRSRSPPARRRERSPSPDE
RERGRGRARDHSRSRSRSPARHSRSRSRHSR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR012677Nucleotide-bd_a/b_plait_sf
IPR000504RRM_dom