prot_E-siliculosus-1a_F_contig1367.2190.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig1367.2190.1
Unique Nameprot_E-siliculosus-1a_F_contig1367.2190.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length362
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1367.2190.1 vs. uniprot
Match: D8LKZ6_ECTSI (Endo/excinuclease amino terminal domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKZ6_ECTSI)

HSP 1 Score: 540 bits (1391), Expect = 3.110e-191
Identity = 307/364 (84.34%), Postives = 311/364 (85.44%), Query Frame = 0
Query:    1 MPKANPRKKFFHCYLLQSQDPKHKRSTYIGFTVDPGRRIRQHNGDINGGAFRTKRKRPWDMVAIVHGFPSKSSALQFEAAWQHPQRDRRIKVKVRDLPVDSRRTVGVPGKLRLCKAMLCLDPWARYGLGIRFLREEYAASYGKLNLPQPLPVKGDPDTELSTGAQGGLPVYKSPPGSQEERLEARRLCRCALCGDNVNAAGGDGXXXXXXXXXXXXXXXXXXEGGDDVDGHDSDGAGGWSSDVGSTSFISQPYP---EXXXXXXXXXXSCWRLSPAHYQRKRAGKGSDGNGQPERFPASGEMPGGVKSPALANGNKHISFVDTTSGRYDSDGSEGGDQMTKDAEQSPRKLPLAERLRLRRLRDC 361
            MPKANPRKKFFHCYLLQSQDPKHKRSTYIGFTVDPGRRIRQHNGDI GGAFRTKRKRPWDMVAIVHGFPSKSSALQFEAAWQHPQRDRRIKVKV DLPVDSRRTVGVPGKLRLCKAMLCLDPWARYGLGIRFLREEYAASY KLNLPQPLPVKGDPDTELSTGAQ GLPVYKSPPGSQEERLEA+                   XXXXXXXXXXXXX         D DGHDSDGAGGWSSD GST FISQPYP    XXXXXXXXXXSCWRLS      +RAGK S+G+GQPERFPASGEMPGGVKSPALANGNKHISFVDTTS RYDSDGSE GDQM K   QSP KLPLAERLRLRRLRDC
Sbjct:    1 MPKANPRKKFFHCYLLQSQDPKHKRSTYIGFTVDPGRRIRQHNGDIIGGAFRTKRKRPWDMVAIVHGFPSKSSALQFEAAWQHPQRDRRIKVKVPDLPVDSRRTVGVPGKLRLCKAMLCLDPWARYGLGIRFLREEYAASYSKLNLPQPLPVKGDPDTELSTGAQEGLPVYKSPPGSQEERLEAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------DGDGHDSDGAGGWSSDAGSTDFISQPYPGEEXXXXXXXXXXXSCWRLS-----LERAGKDSEGSGQPERFPASGEMPGGVKSPALANGNKHISFVDTTSDRYDSDGSEEGDQMKKITGQSPPKLPLAERLRLRRLRDC 350          
BLAST of mRNA_E-siliculosus-1a_F_contig1367.2190.1 vs. uniprot
Match: A0A836CE53_9STRA (GIY-YIG domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE53_9STRA)

HSP 1 Score: 153 bits (387), Expect = 7.790e-42
Identity = 78/150 (52.00%), Postives = 94/150 (62.67%), Query Frame = 0
Query:   26 STYIGFTVDPGRRIRQHNGDINGGAFRTKRKRPWDMVAIVHGFPSKSSALQFEAAWQHPQRDRRIKVKVRDLPVDSRRTVGVPGKLRLCKAMLCLDPWARYGLGIRFLREEYAASYGKLNLPQP--LPVKGDPDTELSTGAQGGLPVYKS 173
            STYIGFTV P RRIRQHNG+I  GA RT+ KRPW M  +V GFPSKS+ALQFE AWQHP +DR +K KV  L +  R + G+  KL +CKA++CL+PW RYGLG  F   + AA +    LP    L  +   D     G    L VY S
Sbjct:    2 STYIGFTVHPKRRIRQHNGEIKAGARRTRMKRPWQMALVVTGFPSKSAALQFEWAWQHPYKDRHVKGKVGALALKGRGSYGLKAKLAICKALMCLEPWCRYGLGTHFADNDIAAVFRAAALPDSDALQPRALDDAPRCVGPLDALAVYAS 151          
BLAST of mRNA_E-siliculosus-1a_F_contig1367.2190.1 vs. uniprot
Match: A0A5J4Y6I9_9CHLO (Structure-specific endonuclease subunit SLX1 homolog n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4Y6I9_9CHLO)

HSP 1 Score: 144 bits (364), Expect = 3.400e-37
Identity = 73/138 (52.90%), Postives = 89/138 (64.49%), Query Frame = 0
Query:   10 FFHCYLLQSQDPKHKRSTYIGFTVDPGRRIRQHNGDINGGAFRTKRKRPWDMVAIVHGFPSKSSALQFEAAWQHPQRDRRIKVKVRDLPVDSRRTVGVPGKLRLCKAMLCLDPWARYGLGIRFLREEYAASYGKLNLP 147
            F+ CYLL S DPK+K  TYIGFTV+P RR+RQHNG+I  GA RTKR RPWDMV +V+GFP+K  ALQFE AWQHP   + ++   + L   + R  G  GK+RL   ML LDPW  Y L ++ L   YA    K   P
Sbjct:    4 FYGCYLLTSLDPKNKGRTYIGFTVNPRRRLRQHNGEITAGAHRTKRGRPWDMVLVVYGFPTKVQALQFEWAWQHPTASKAVREAAQRLGTIAMR--GAKGKVRLLFEMLSLDPWCYYPLTVQLLSTSYAPLRNKCLQP 139          
BLAST of mRNA_E-siliculosus-1a_F_contig1367.2190.1 vs. uniprot
Match: D8QRY0_SELML (GIY-YIG domain-containing protein (Fragment) n=5 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8QRY0_SELML)

HSP 1 Score: 141 bits (355), Expect = 4.780e-37
Identity = 67/129 (51.94%), Postives = 90/129 (69.77%), Query Frame = 0
Query:   10 FFHCYLLQSQDPKHKRSTYIGFTVDPGRRIRQHNGDINGGAFRTKRKRPWDMVAIVHGFPSKSSALQFEAAWQHPQRDRRIKVKVRDLPVDSRRTVGVPGKLRLCKAMLCLDPWARYGLGIRFLREEYA 138
            F+ CYLL+S +P+ K  TYIGFTV+P RRIRQHNG+I  GAFRTK+KRPW+MV  V+GF SK+ ALQFE AWQHP+  + + +     P + R   G+ GK+++  AMLC   W+R  L ++F   E+A
Sbjct:    1 FYGCYLLRSINPRFKGQTYIGFTVNPRRRIRQHNGEITCGAFRTKKKRPWEMVLCVYGFSSKTDALQFEWAWQHPKLSKEVVLPAEVKPKNLR---GIAGKIKILHAMLCSPKWSRMKLTVQFFSSEHA 126          
BLAST of mRNA_E-siliculosus-1a_F_contig1367.2190.1 vs. uniprot
Match: UPI001F03346F (structure-specific endonuclease subunit SLX1 homolog n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F03346F)

HSP 1 Score: 142 bits (357), Expect = 1.850e-36
Identity = 78/187 (41.71%), Postives = 107/187 (57.22%), Query Frame = 0
Query:    9 KFFHCYLLQSQDPKHKRSTYIGFTVDPGRRIRQHNGDIN-GGAFRTKRKRPWDMVAIVHGFPSKSSALQFEAAWQHPQRDRRIKVKVRDLPVDSRRTVGVPGKLRLCKAMLCLDPWARYGLGIRFLREEYAASYGKLNLPQ-PLPVKGDPDTELSTGAQGGLPVYKSPPGS---QEERLEARRLCRC 190
            +F+ CYLL S +PK+K  TYIGFTVDP RRIRQHNG I  GGA +T ++ PW+M+  +HGFP++ SAL+FE AWQHP + RR+K  V       +    V    R+   ML + PW R  L IR+L++EY   +  L  P   +P+             G +P +K P  +   +EE LE +  C C
Sbjct:    8 RFYGCYLLYSLNPKYKGRTYIGFTVDPNRRIRQHNGGIEKGGAHKTSKRGPWEMILTIHGFPNEISALRFEWAWQHPMKSRRLKHVVEKKKSSEK---SVQFCFRVLTEMLRVGPWNRLPLTIRWLKDEYMMDFDTLKQPPIHMPI-----------VYGSIPSWKKPKSADIAREEELETKTCCIC 180          
BLAST of mRNA_E-siliculosus-1a_F_contig1367.2190.1 vs. uniprot
Match: W9RZR0_9ROSA (Structure-specific endonuclease subunit SLX1 homolog n=2 Tax=Morus notabilis TaxID=981085 RepID=W9RZR0_9ROSA)

HSP 1 Score: 144 bits (363), Expect = 4.240e-36
Identity = 81/180 (45.00%), Postives = 105/180 (58.33%), Query Frame = 0
Query:    7 RKKFFHCYLLQSQDPKHKRSTYIGFTVDPGRRIRQHNGDINGGAFRTKRKRPWDMVAIVHGFPSKSSALQFEAAWQHPQRDRRIKVKVRDLPVDSRRTVGVPGKLRLCKAMLCLDPWARYGLGIRFLREEYAA-SYGKLNLPQPLPVKGDPDTELSTGAQGGLPVYKSP-PGSQEERLEA 184
            RK F+ CYLL S  P+HK  TYIGFTV+P RRIRQHNG+I  GA+RTK++RPW+MV  +HGFPS  SALQFE AWQHP       + VR      +   G+  K++L   ML L  W    + + +   +Y   S G L+LPQ   VK  P  EL    +G   ++++      EER EA
Sbjct:   29 RKGFYACYLLVSLSPRHKGHTYIGFTVNPRRRIRQHNGEIGCGAWRTKKRRPWEMVLCIHGFPSNVSALQFEWAWQHPNES----LAVRKAAASFKSLSGIANKIKLAYTMLTLPSWQSLNITVNYFSTKYTQHSAGCLSLPQHKKVKICPMDELPCYVKGDEGLFENEGEWDNEERDEA 204          
BLAST of mRNA_E-siliculosus-1a_F_contig1367.2190.1 vs. uniprot
Match: A0A061RKW1_9CHLO (Structure-specific endonuclease subunit SLX1 homolog n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RKW1_9CHLO)

HSP 1 Score: 141 bits (355), Expect = 4.240e-36
Identity = 88/200 (44.00%), Postives = 111/200 (55.50%), Query Frame = 0
Query:    8 KKFFHCYLLQSQDPKHKRSTYIGFTVDPGRRIRQHNGDINGGAFRTKRKRPWDMVAIVHGFPSKSSALQFEAAWQHPQRDRRIKVKVRDLPVDSRRTVGVPGKLRLCKAMLCLDPWARYGLGIRFLREEYAASYGKLNLPQP------LPVKGDPDTELSTGAQG---GLPVYKSPPGS-QEERLEARR----LCRCALC 193
            KKFF CYLL S DPK K  TYIGFTV+P RRIRQHNG I  GA RTK+ RPWDM  +++GFP+K  ALQFE AWQHP     ++    +L    R   GV GK+RL   ML ++P+  Y L ++FL  +Y+A    +  P P       P+   P   L  G  G   G  + +    S Q+E   ARR    L R + C
Sbjct:    3 KKFFGCYLLASLDPKCKGRTYIGFTVNPRRRIRQHNGQIVNGAHRTKKGRPWDMALVLYGFPTKIHALQFEWAWQHPSTSLAVRDAYNNLT--KRERGGVAGKIRLLIEMLRVEPFCFYQLTLQFLSSKYSAMRAGMPSPPPHVAVEVAPLDDLPGELLDDGVDGPEEGAELLEQQGFSAQDEPAVARRRPTLLWRASAC 200          
BLAST of mRNA_E-siliculosus-1a_F_contig1367.2190.1 vs. uniprot
Match: A0A2I0KXX6_PUNGR (GIY-YIG domain-containing protein n=1 Tax=Punica granatum TaxID=22663 RepID=A0A2I0KXX6_PUNGR)

HSP 1 Score: 136 bits (342), Expect = 1.130e-35
Identity = 64/118 (54.24%), Postives = 82/118 (69.49%), Query Frame = 0
Query:    8 KKFFHCYLLQSQDPKHKRSTYIGFTVDPGRRIRQHNGDINGGAFRTKRKRPWDMVAIVHGFPSKSSALQFEAAWQHPQRDRRIKVKVRDLPVDSRRTVGVPGKLRLCKAMLCLDPWAR 125
            ++F+ CYLL S  P+HK  TYIGFTV+P RRIRQHNG++  GA+RTK KRPW+MV  ++GFP+  SALQFE AWQHP    R  V VR+   + +   G+  K++L  AML L PW R
Sbjct:   27 RRFYGCYLLVSLSPRHKGQTYIGFTVNPRRRIRQHNGELRSGAWRTKNKRPWEMVVCIYGFPTNVSALQFEWAWQHP----RESVAVREAAANFKSLSGITNKIKLAYAMLTLPPWQR 140          
BLAST of mRNA_E-siliculosus-1a_F_contig1367.2190.1 vs. uniprot
Match: A0A5E4G6P4_PRUDU (Structure-specific endonuclease subunit SLX1 homolog n=6 Tax=Prunus TaxID=3754 RepID=A0A5E4G6P4_PRUDU)

HSP 1 Score: 139 bits (349), Expect = 1.540e-35
Identity = 70/146 (47.95%), Postives = 92/146 (63.01%), Query Frame = 0
Query:    9 KFFHCYLLQSQDPKHKRSTYIGFTVDPGRRIRQHNGDINGGAFRTKRKRPWDMVAIVHGFPSKSSALQFEAAWQHPQRDRRIKVKVRDLPVDSRRTVGVPGKLRLCKAMLCLDPWARYGLGIRFLREEYAA-SYGKLNLPQPLPVK 153
            +FF CYLL S+ P++K  TYIGFTV+P RRIRQHNG+I  GA+RTKRKRPW+MV  ++GFP+  SALQFE AWQHP     +   VR      +   G+  K++L   ML L PW    + ++F   +Y   S G   LP+ + VK
Sbjct:   26 RFFACYLLSSRSPRYKGHTYIGFTVNPRRRIRQHNGEIAQGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPT----VSKAVRQAAASFKSPRGLVSKIKLAYTMLTLPPWQSLNITVKFFSTQYTKHSAGCPRLPEQMKVK 167          
BLAST of mRNA_E-siliculosus-1a_F_contig1367.2190.1 vs. uniprot
Match: A0A314YTX9_PRUYE (Structure-specific endonuclease subunit SLX1 homolog n=1 Tax=Prunus yedoensis var. nudiflora TaxID=2094558 RepID=A0A314YTX9_PRUYE)

HSP 1 Score: 137 bits (344), Expect = 2.820e-35
Identity = 70/146 (47.95%), Postives = 90/146 (61.64%), Query Frame = 0
Query:    9 KFFHCYLLQSQDPKHKRSTYIGFTVDPGRRIRQHNGDINGGAFRTKRKRPWDMVAIVHGFPSKSSALQFEAAWQHPQRDRRIKVKVRDLPVDSRRTVGVPGKLRLCKAMLCLDPWARYGLGIRFLREEYAA-SYGKLNLPQPLPVK 153
            +FF CYLL S+ P +K  TYIGFTV+P RRIRQHNG+I  GA+RTKRKRPW+MV  ++GFP+  SALQFE AWQHP     +   VR      +   G+  K++L   ML L PW    + + F   +Y   S G   LP+ + VK
Sbjct:   21 RFFACYLLTSRSPSYKGHTYIGFTVNPRRRIRQHNGEIAQGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPT----VSKAVRQAAASFKSLRGLVSKIKLAYTMLTLPPWQSLNITVNFFSTQYTKHSAGCPRLPEQMKVK 162          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1367.2190.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKZ6_ECTSI3.110e-19184.34Endo/excinuclease amino terminal domain-containing... [more]
A0A836CE53_9STRA7.790e-4252.00GIY-YIG domain-containing protein n=1 Tax=Tribonem... [more]
A0A5J4Y6I9_9CHLO3.400e-3752.90Structure-specific endonuclease subunit SLX1 homol... [more]
D8QRY0_SELML4.780e-3751.94GIY-YIG domain-containing protein (Fragment) n=5 T... [more]
UPI001F03346F1.850e-3641.71structure-specific endonuclease subunit SLX1 homol... [more]
W9RZR0_9ROSA4.240e-3645.00Structure-specific endonuclease subunit SLX1 homol... [more]
A0A061RKW1_9CHLO4.240e-3644.00Structure-specific endonuclease subunit SLX1 homol... [more]
A0A2I0KXX6_PUNGR1.130e-3554.24GIY-YIG domain-containing protein n=1 Tax=Punica g... [more]
A0A5E4G6P4_PRUDU1.540e-3547.95Structure-specific endonuclease subunit SLX1 homol... [more]
A0A314YTX9_PRUYE2.820e-3547.95Structure-specific endonuclease subunit SLX1 homol... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR035901GIY-YIG endonuclease superfamilyGENE3D3.40.1440.10coord: 6..103
e-value: 4.1E-16
score: 60.7
IPR000305GIY-YIG endonucleasePFAMPF01541GIY-YIGcoord: 12..87
e-value: 5.0E-15
score: 55.5
IPR000305GIY-YIG endonucleasePROSITEPS50164GIY_YIGcoord: 9..92
score: 18.992
NoneNo IPR availablePANTHERPTHR20208FAMILY NOT NAMEDcoord: 4..154
IPR027520Structure-specific endonuclease subunit Slx1HAMAPMF_03100Endonuc_su_Slx1coord: 6..330
score: 21.638

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1367contigE-siliculosus-1a_F_contig1367:22068..24875 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1367.2190.1mRNA_E-siliculosus-1a_F_contig1367.2190.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig1367 22068..24875 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig1367.2190.1 ID=prot_E-siliculosus-1a_F_contig1367.2190.1|Name=mRNA_E-siliculosus-1a_F_contig1367.2190.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=362bp
MPKANPRKKFFHCYLLQSQDPKHKRSTYIGFTVDPGRRIRQHNGDINGGA
FRTKRKRPWDMVAIVHGFPSKSSALQFEAAWQHPQRDRRIKVKVRDLPVD
SRRTVGVPGKLRLCKAMLCLDPWARYGLGIRFLREEYAASYGKLNLPQPL
PVKGDPDTELSTGAQGGLPVYKSPPGSQEERLEARRLCRCALCGDNVNAA
GGDGGGPPVWRVDDSSDDDEDHEGGDDVDGHDSDGAGGWSSDVGSTSFIS
QPYPEEEDDEEDDDDSCWRLSPAHYQRKRAGKGSDGNGQPERFPASGEMP
GGVKSPALANGNKHISFVDTTSGRYDSDGSEGGDQMTKDAEQSPRKLPLA
ERLRLRRLRDC*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR027520Slx1
IPR000305GIY-YIG_endonuc
IPR035901GIY-YIG_endonuc_sf