mRNA_E-siliculosus-1a_F_contig1367.2190.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1367.2190.1
Unique NamemRNA_E-siliculosus-1a_F_contig1367.2190.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1367.2190.1 vs. uniprot
Match: D8LKZ6_ECTSI (Endo/excinuclease amino terminal domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKZ6_ECTSI)

HSP 1 Score: 540 bits (1391), Expect = 3.110e-191
Identity = 307/364 (84.34%), Postives = 311/364 (85.44%), Query Frame = 1 
Query:    1 MPKANPRKKFFHCYLLQSQDPKHKRSTYIGFTVDPGRRIRQHNGDINGGAFRTKRKRPWDMVAIVHGFPSKSSALQFEAAWQHPQRDRRIKVKVRDLPVDSRRTVGVPGKLRLCKAMLCLDPWARYGLGIRFLREEYAASYGKLNLPQPLPVKGDPDTELSTGAQGGLPVYKSPPGSQEERLEARRLCRCALCGDNVNAAGGDGXXXXXXXXXXXXXXXXXXEGGDDVDGHDSDGAGGWSSDVGSTSFISQPYP---EXXXXXXXXXXSCWRLSPAHYQRKRAGKGSDGNGQPERFPASGEMPGGVKSPALANGNKHISFVDTTSGRYDSDGSEGGDQMTKDAEQSPRKLPLAERLRLRRLRDC 1083
            MPKANPRKKFFHCYLLQSQDPKHKRSTYIGFTVDPGRRIRQHNGDI GGAFRTKRKRPWDMVAIVHGFPSKSSALQFEAAWQHPQRDRRIKVKV DLPVDSRRTVGVPGKLRLCKAMLCLDPWARYGLGIRFLREEYAASY KLNLPQPLPVKGDPDTELSTGAQ GLPVYKSPPGSQEERLEA+                   XXXXXXXXXXXXX         D DGHDSDGAGGWSSD GST FISQPYP    XXXXXXXXXXSCWRLS      +RAGK S+G+GQPERFPASGEMPGGVKSPALANGNKHISFVDTTS RYDSDGSE GDQM K   QSP KLPLAERLRLRRLRDC
Sbjct:    1 MPKANPRKKFFHCYLLQSQDPKHKRSTYIGFTVDPGRRIRQHNGDIIGGAFRTKRKRPWDMVAIVHGFPSKSSALQFEAAWQHPQRDRRIKVKVPDLPVDSRRTVGVPGKLRLCKAMLCLDPWARYGLGIRFLREEYAASYSKLNLPQPLPVKGDPDTELSTGAQEGLPVYKSPPGSQEERLEAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------DGDGHDSDGAGGWSSDAGSTDFISQPYPGEEXXXXXXXXXXXSCWRLS-----LERAGKDSEGSGQPERFPASGEMPGGVKSPALANGNKHISFVDTTSDRYDSDGSEEGDQMKKITGQSPPKLPLAERLRLRRLRDC 350
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BLAST of mRNA_E-siliculosus-1a_F_contig1367.2190.1 vs. uniprot
Match: A0A836CE53_9STRA (GIY-YIG domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE53_9STRA)

HSP 1 Score: 153 bits (387), Expect = 7.790e-42
Identity = 78/150 (52.00%), Postives = 94/150 (62.67%), Query Frame = 1 
Query:   76 STYIGFTVDPGRRIRQHNGDINGGAFRTKRKRPWDMVAIVHGFPSKSSALQFEAAWQHPQRDRRIKVKVRDLPVDSRRTVGVPGKLRLCKAMLCLDPWARYGLGIRFLREEYAASYGKLNLPQP--LPVKGDPDTELSTGAQGGLPVYKS 519
            STYIGFTV P RRIRQHNG+I  GA RT+ KRPW M  +V GFPSKS+ALQFE AWQHP +DR +K KV  L +  R + G+  KL +CKA++CL+PW RYGLG  F   + AA +    LP    L  +   D     G    L VY S
Sbjct:    2 STYIGFTVHPKRRIRQHNGEIKAGARRTRMKRPWQMALVVTGFPSKSAALQFEWAWQHPYKDRHVKGKVGALALKGRGSYGLKAKLAICKALMCLEPWCRYGLGTHFADNDIAAVFRAAALPDSDALQPRALDDAPRCVGPLDALAVYAS 151
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BLAST of mRNA_E-siliculosus-1a_F_contig1367.2190.1 vs. uniprot
Match: A0A5J4Y6I9_9CHLO (Structure-specific endonuclease subunit SLX1 homolog n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4Y6I9_9CHLO)

HSP 1 Score: 144 bits (364), Expect = 3.400e-37
Identity = 73/138 (52.90%), Postives = 89/138 (64.49%), Query Frame = 1 
Query:   28 FFHCYLLQSQDPKHKRSTYIGFTVDPGRRIRQHNGDINGGAFRTKRKRPWDMVAIVHGFPSKSSALQFEAAWQHPQRDRRIKVKVRDLPVDSRRTVGVPGKLRLCKAMLCLDPWARYGLGIRFLREEYAASYGKLNLP 441
            F+ CYLL S DPK+K  TYIGFTV+P RR+RQHNG+I  GA RTKR RPWDMV +V+GFP+K  ALQFE AWQHP   + ++   + L   + R  G  GK+RL   ML LDPW  Y L ++ L   YA    K   P
Sbjct:    4 FYGCYLLTSLDPKNKGRTYIGFTVNPRRRLRQHNGEITAGAHRTKRGRPWDMVLVVYGFPTKVQALQFEWAWQHPTASKAVREAAQRLGTIAMR--GAKGKVRLLFEMLSLDPWCYYPLTVQLLSTSYAPLRNKCLQP 139
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BLAST of mRNA_E-siliculosus-1a_F_contig1367.2190.1 vs. uniprot
Match: D8QRY0_SELML (GIY-YIG domain-containing protein (Fragment) n=5 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8QRY0_SELML)

HSP 1 Score: 141 bits (355), Expect = 4.780e-37
Identity = 67/129 (51.94%), Postives = 90/129 (69.77%), Query Frame = 1 
Query:   28 FFHCYLLQSQDPKHKRSTYIGFTVDPGRRIRQHNGDINGGAFRTKRKRPWDMVAIVHGFPSKSSALQFEAAWQHPQRDRRIKVKVRDLPVDSRRTVGVPGKLRLCKAMLCLDPWARYGLGIRFLREEYA 414
            F+ CYLL+S +P+ K  TYIGFTV+P RRIRQHNG+I  GAFRTK+KRPW+MV  V+GF SK+ ALQFE AWQHP+  + + +     P + R   G+ GK+++  AMLC   W+R  L ++F   E+A
Sbjct:    1 FYGCYLLRSINPRFKGQTYIGFTVNPRRRIRQHNGEITCGAFRTKKKRPWEMVLCVYGFSSKTDALQFEWAWQHPKLSKEVVLPAEVKPKNLR---GIAGKIKILHAMLCSPKWSRMKLTVQFFSSEHA 126
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BLAST of mRNA_E-siliculosus-1a_F_contig1367.2190.1 vs. uniprot
Match: UPI001F03346F (structure-specific endonuclease subunit SLX1 homolog n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F03346F)

HSP 1 Score: 142 bits (357), Expect = 1.850e-36
Identity = 78/187 (41.71%), Postives = 107/187 (57.22%), Query Frame = 1 
Query:   25 KFFHCYLLQSQDPKHKRSTYIGFTVDPGRRIRQHNGDIN-GGAFRTKRKRPWDMVAIVHGFPSKSSALQFEAAWQHPQRDRRIKVKVRDLPVDSRRTVGVPGKLRLCKAMLCLDPWARYGLGIRFLREEYAASYGKLNLPQ-PLPVKGDPDTELSTGAQGGLPVYKSPPGS---QEERLEARRLCRC 570
            +F+ CYLL S +PK+K  TYIGFTVDP RRIRQHNG I  GGA +T ++ PW+M+  +HGFP++ SAL+FE AWQHP + RR+K  V       +    V    R+   ML + PW R  L IR+L++EY   +  L  P   +P+             G +P +K P  +   +EE LE +  C C
Sbjct:    8 RFYGCYLLYSLNPKYKGRTYIGFTVDPNRRIRQHNGGIEKGGAHKTSKRGPWEMILTIHGFPNEISALRFEWAWQHPMKSRRLKHVVEKKKSSEK---SVQFCFRVLTEMLRVGPWNRLPLTIRWLKDEYMMDFDTLKQPPIHMPI-----------VYGSIPSWKKPKSADIAREEELETKTCCIC 180
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BLAST of mRNA_E-siliculosus-1a_F_contig1367.2190.1 vs. uniprot
Match: W9RZR0_9ROSA (Structure-specific endonuclease subunit SLX1 homolog n=2 Tax=Morus notabilis TaxID=981085 RepID=W9RZR0_9ROSA)

HSP 1 Score: 144 bits (363), Expect = 4.240e-36
Identity = 81/180 (45.00%), Postives = 105/180 (58.33%), Query Frame = 1 
Query:   19 RKKFFHCYLLQSQDPKHKRSTYIGFTVDPGRRIRQHNGDINGGAFRTKRKRPWDMVAIVHGFPSKSSALQFEAAWQHPQRDRRIKVKVRDLPVDSRRTVGVPGKLRLCKAMLCLDPWARYGLGIRFLREEYAA-SYGKLNLPQPLPVKGDPDTELSTGAQGGLPVYKSP-PGSQEERLEA 552
            RK F+ CYLL S  P+HK  TYIGFTV+P RRIRQHNG+I  GA+RTK++RPW+MV  +HGFPS  SALQFE AWQHP       + VR      +   G+  K++L   ML L  W    + + +   +Y   S G L+LPQ   VK  P  EL    +G   ++++      EER EA
Sbjct:   29 RKGFYACYLLVSLSPRHKGHTYIGFTVNPRRRIRQHNGEIGCGAWRTKKRRPWEMVLCIHGFPSNVSALQFEWAWQHPNES----LAVRKAAASFKSLSGIANKIKLAYTMLTLPSWQSLNITVNYFSTKYTQHSAGCLSLPQHKKVKICPMDELPCYVKGDEGLFENEGEWDNEERDEA 204
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BLAST of mRNA_E-siliculosus-1a_F_contig1367.2190.1 vs. uniprot
Match: A0A061RKW1_9CHLO (Structure-specific endonuclease subunit SLX1 homolog n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RKW1_9CHLO)

HSP 1 Score: 141 bits (355), Expect = 4.240e-36
Identity = 88/200 (44.00%), Postives = 111/200 (55.50%), Query Frame = 1 
Query:   22 KKFFHCYLLQSQDPKHKRSTYIGFTVDPGRRIRQHNGDINGGAFRTKRKRPWDMVAIVHGFPSKSSALQFEAAWQHPQRDRRIKVKVRDLPVDSRRTVGVPGKLRLCKAMLCLDPWARYGLGIRFLREEYAASYGKLNLPQP------LPVKGDPDTELSTGAQG---GLPVYKSPPGS-QEERLEARR----LCRCALC 579
            KKFF CYLL S DPK K  TYIGFTV+P RRIRQHNG I  GA RTK+ RPWDM  +++GFP+K  ALQFE AWQHP     ++    +L    R   GV GK+RL   ML ++P+  Y L ++FL  +Y+A    +  P P       P+   P   L  G  G   G  + +    S Q+E   ARR    L R + C
Sbjct:    3 KKFFGCYLLASLDPKCKGRTYIGFTVNPRRRIRQHNGQIVNGAHRTKKGRPWDMALVLYGFPTKIHALQFEWAWQHPSTSLAVRDAYNNLT--KRERGGVAGKIRLLIEMLRVEPFCFYQLTLQFLSSKYSAMRAGMPSPPPHVAVEVAPLDDLPGELLDDGVDGPEEGAELLEQQGFSAQDEPAVARRRPTLLWRASAC 200
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BLAST of mRNA_E-siliculosus-1a_F_contig1367.2190.1 vs. uniprot
Match: A0A2I0KXX6_PUNGR (GIY-YIG domain-containing protein n=1 Tax=Punica granatum TaxID=22663 RepID=A0A2I0KXX6_PUNGR)

HSP 1 Score: 136 bits (342), Expect = 1.130e-35
Identity = 64/118 (54.24%), Postives = 82/118 (69.49%), Query Frame = 1 
Query:   22 KKFFHCYLLQSQDPKHKRSTYIGFTVDPGRRIRQHNGDINGGAFRTKRKRPWDMVAIVHGFPSKSSALQFEAAWQHPQRDRRIKVKVRDLPVDSRRTVGVPGKLRLCKAMLCLDPWAR 375
            ++F+ CYLL S  P+HK  TYIGFTV+P RRIRQHNG++  GA+RTK KRPW+MV  ++GFP+  SALQFE AWQHP    R  V VR+   + +   G+  K++L  AML L PW R
Sbjct:   27 RRFYGCYLLVSLSPRHKGQTYIGFTVNPRRRIRQHNGELRSGAWRTKNKRPWEMVVCIYGFPTNVSALQFEWAWQHP----RESVAVREAAANFKSLSGITNKIKLAYAMLTLPPWQR 140
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BLAST of mRNA_E-siliculosus-1a_F_contig1367.2190.1 vs. uniprot
Match: A0A5E4G6P4_PRUDU (Structure-specific endonuclease subunit SLX1 homolog n=6 Tax=Prunus TaxID=3754 RepID=A0A5E4G6P4_PRUDU)

HSP 1 Score: 139 bits (349), Expect = 1.540e-35
Identity = 70/146 (47.95%), Postives = 92/146 (63.01%), Query Frame = 1 
Query:   25 KFFHCYLLQSQDPKHKRSTYIGFTVDPGRRIRQHNGDINGGAFRTKRKRPWDMVAIVHGFPSKSSALQFEAAWQHPQRDRRIKVKVRDLPVDSRRTVGVPGKLRLCKAMLCLDPWARYGLGIRFLREEYAA-SYGKLNLPQPLPVK 459
            +FF CYLL S+ P++K  TYIGFTV+P RRIRQHNG+I  GA+RTKRKRPW+MV  ++GFP+  SALQFE AWQHP     +   VR      +   G+  K++L   ML L PW    + ++F   +Y   S G   LP+ + VK
Sbjct:   26 RFFACYLLSSRSPRYKGHTYIGFTVNPRRRIRQHNGEIAQGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPT----VSKAVRQAAASFKSPRGLVSKIKLAYTMLTLPPWQSLNITVKFFSTQYTKHSAGCPRLPEQMKVK 167
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BLAST of mRNA_E-siliculosus-1a_F_contig1367.2190.1 vs. uniprot
Match: A0A314YTX9_PRUYE (Structure-specific endonuclease subunit SLX1 homolog n=1 Tax=Prunus yedoensis var. nudiflora TaxID=2094558 RepID=A0A314YTX9_PRUYE)

HSP 1 Score: 137 bits (344), Expect = 2.820e-35
Identity = 70/146 (47.95%), Postives = 90/146 (61.64%), Query Frame = 1 
Query:   25 KFFHCYLLQSQDPKHKRSTYIGFTVDPGRRIRQHNGDINGGAFRTKRKRPWDMVAIVHGFPSKSSALQFEAAWQHPQRDRRIKVKVRDLPVDSRRTVGVPGKLRLCKAMLCLDPWARYGLGIRFLREEYAA-SYGKLNLPQPLPVK 459
            +FF CYLL S+ P +K  TYIGFTV+P RRIRQHNG+I  GA+RTKRKRPW+MV  ++GFP+  SALQFE AWQHP     +   VR      +   G+  K++L   ML L PW    + + F   +Y   S G   LP+ + VK
Sbjct:   21 RFFACYLLTSRSPSYKGHTYIGFTVNPRRRIRQHNGEIAQGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPT----VSKAVRQAAASFKSLRGLVSKIKLAYTMLTLPPWQSLNITVNFFSTQYTKHSAGCPRLPEQMKVK 162
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1367.2190.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKZ6_ECTSI3.110e-19184.34Endo/excinuclease amino terminal domain-containing... [more]
A0A836CE53_9STRA7.790e-4252.00GIY-YIG domain-containing protein n=1 Tax=Tribonem... [more]
A0A5J4Y6I9_9CHLO3.400e-3752.90Structure-specific endonuclease subunit SLX1 homol... [more]
D8QRY0_SELML4.780e-3751.94GIY-YIG domain-containing protein (Fragment) n=5 T... [more]
UPI001F03346F1.850e-3641.71structure-specific endonuclease subunit SLX1 homol... [more]
W9RZR0_9ROSA4.240e-3645.00Structure-specific endonuclease subunit SLX1 homol... [more]
A0A061RKW1_9CHLO4.240e-3644.00Structure-specific endonuclease subunit SLX1 homol... [more]
A0A2I0KXX6_PUNGR1.130e-3554.24GIY-YIG domain-containing protein n=1 Tax=Punica g... [more]
A0A5E4G6P4_PRUDU1.540e-3547.95Structure-specific endonuclease subunit SLX1 homol... [more]
A0A314YTX9_PRUYE2.820e-3547.95Structure-specific endonuclease subunit SLX1 homol... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1367contigE-siliculosus-1a_F_contig1367:22068..24875 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size1086
Model size1086
Exons5
Ec32 orthologEc-11_006130.1
Ec32 ortholog descriptionGIY-YIG nuclease superfamily
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko01000,ko03400
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.L
EggNOG OGsKOG3005@1,KOG3005@2759
EggNOG free text desc.5'-flap endonuclease activity
GOsGO:0000228,GO:0000723,GO:0001325,GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0006139,GO:0006259,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008821,GO:0009893,GO:0009987,GO:0010604,GO:0010638,GO:0016043,GO:0016787,GO:0016788,GO:0016888,GO:0016889,GO:0016893,GO:0016894,GO:0017108,GO:0019219,GO:0019222,GO:0022607,GO:0031323,GO:0031325,GO:0031974,GO:0031981,GO:0032200,GO:0032204,GO:0032206,GO:0032991,GO:0033043,GO:0033044,GO:0033557,GO:0034641,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0045935,GO:0046483,GO:0048256,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051052,GO:0051054,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051276,GO:0060249,GO:0060255,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0090656,GO:0090737,GO:0140097,GO:1901360,GO:1904429,GO:1904431,GO:2001252
KEGG Pathwayko03460,map03460
KEGG koko:K15078
Seed eggNOG ortholog2880.D8LKZ6
Seed ortholog evalue2.3e-153
Seed ortholog score548.5
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1367.2190.1prot_E-siliculosus-1a_F_contig1367.2190.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1367 22068..24875 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927883.2526226-CDS-E-siliculosus-1a_F_contig1367:22067..221951622927883.2526226-CDS-E-siliculosus-1a_F_contig1367:22067..22195Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1367 22068..22195 +
1696318721.7151356-CDS-E-siliculosus-1a_F_contig1367:22067..221951696318721.7151356-CDS-E-siliculosus-1a_F_contig1367:22067..22195Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1367 22068..22195 +
1622927883.2688644-CDS-E-siliculosus-1a_F_contig1367:22611..226391622927883.2688644-CDS-E-siliculosus-1a_F_contig1367:22611..22639Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1367 22612..22639 +
1696318721.7339401-CDS-E-siliculosus-1a_F_contig1367:22611..226391696318721.7339401-CDS-E-siliculosus-1a_F_contig1367:22611..22639Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1367 22612..22639 +
1622927883.2886715-CDS-E-siliculosus-1a_F_contig1367:23535..237531622927883.2886715-CDS-E-siliculosus-1a_F_contig1367:23535..23753Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1367 23536..23753 +
1696318721.7447367-CDS-E-siliculosus-1a_F_contig1367:23535..237531696318721.7447367-CDS-E-siliculosus-1a_F_contig1367:23535..23753Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1367 23536..23753 +
1622927883.3085706-CDS-E-siliculosus-1a_F_contig1367:23926..241311622927883.3085706-CDS-E-siliculosus-1a_F_contig1367:23926..24131Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1367 23927..24131 +
1696318721.7531712-CDS-E-siliculosus-1a_F_contig1367:23926..241311696318721.7531712-CDS-E-siliculosus-1a_F_contig1367:23926..24131Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1367 23927..24131 +
1622927883.3274138-CDS-E-siliculosus-1a_F_contig1367:24368..248751622927883.3274138-CDS-E-siliculosus-1a_F_contig1367:24368..24875Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1367 24369..24875 +
1696318721.7625535-CDS-E-siliculosus-1a_F_contig1367:24368..248751696318721.7625535-CDS-E-siliculosus-1a_F_contig1367:24368..24875Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1367 24369..24875 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1367.2190.1

>prot_E-siliculosus-1a_F_contig1367.2190.1 ID=prot_E-siliculosus-1a_F_contig1367.2190.1|Name=mRNA_E-siliculosus-1a_F_contig1367.2190.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=362bp
MPKANPRKKFFHCYLLQSQDPKHKRSTYIGFTVDPGRRIRQHNGDINGGA
FRTKRKRPWDMVAIVHGFPSKSSALQFEAAWQHPQRDRRIKVKVRDLPVD
SRRTVGVPGKLRLCKAMLCLDPWARYGLGIRFLREEYAASYGKLNLPQPL
PVKGDPDTELSTGAQGGLPVYKSPPGSQEERLEARRLCRCALCGDNVNAA
GGDGGGPPVWRVDDSSDDDEDHEGGDDVDGHDSDGAGGWSSDVGSTSFIS
QPYPEEEDDEEDDDDSCWRLSPAHYQRKRAGKGSDGNGQPERFPASGEMP
GGVKSPALANGNKHISFVDTTSGRYDSDGSEGGDQMTKDAEQSPRKLPLA
ERLRLRRLRDC*
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mRNA from alignment at E-siliculosus-1a_F_contig1367:22068..24875+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1367.2190.1 ID=mRNA_E-siliculosus-1a_F_contig1367.2190.1|Name=mRNA_E-siliculosus-1a_F_contig1367.2190.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2808bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1367:22068..24875+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCCCAAGGCCAATCCGCGCAAGAAATTCTTCCACTGCTACTTGCTGCA
GTCGCAAGACCCCAAGCACAAGCGGTCGACCTACATAGGCTTCACCGTGG
ATCCCGGTCGAAGAATCAGGCAACACAAGTGAGATAACCGTAGCGATTGA
GGTACGGGCTACGCGCACGGAAAAACTCCGCCGATGATATTTGTCGATGC
ATGCATTAGTGCCCCCCCGGAGACAGCAGTAGTCAACCGGTTGCCTACAT
TGTAGCAGCGAAAAGTAAGGTGCCCTGCTGTCTTGCTTCCTGTTTGTCCT
GCTGCTGGTCACCCGCCTATCGAAGCGTTGCACCTGACGATGCCAGGACA
TAATATCAAATCTTCGGAAGAACACATCAGCAGCCATGGTTTATGTTGCT
GCTGTGCAGTGAAATTGATCGCTTGTCAAGTGTGCCTCTCTCGACCGTTT
GTTGTTTGCTGTGTTGCTGCTGCCCGTCGGTGAAATCAACGATCACCTGT
ACCTTCCTGGCGAAATCGACCGTGCAACTTTCTTGGCCCTCCAGCGGAGA
CATCAACGGCGGGGCATTCCGAGTGAGCCACCCACCGTCTTGATGTTGTA
TTACCGCACAGCGAGTATTTACTAGTCTGTTGGTTGTGCGATACCGACAA
CTGCAGCGTTGCCAATGTCACCAAGCTGAGCACAGTAGTAGTCCGACTTC
AAACAAAATATCTCAAAGTAAGTATCAGGGGGTGGGTTTCCAGTGTAGAC
ACGAAGAAGTCAACTGGATGATGTAGCACTTTCACTTTCGGTGTAGACAC
GGACACCATACACATACAAAACAGTAGTCGTAGGCCCTCTGTAAGGCGGG
TATGCGTCAGATCGATTCATCTGCCCCATACATACAGGGCACCGGTCTTA
TTCAATGTGTAGAACGACTTGACTATTCCGCCTACTGAAAAGTGTAGTAC
ACGTCTCACCACGAAAAATGGGGAGACCGTCGTCATAGTAAATAGGACGA
AAACAACCAACAATAATGCCAGCCAATTTTTTACCTGCCTTATAGAGGGC
CTAGGACTGTAGCTCAAGCATTGGAGTGAGTACGCCGCGTACGCCGGCCG
GGTTGATTCGGACCCGCTCGGGACGCACACCAACGTGATTCTCCCCAATG
TTCGGTACTGTTACAACAGCATACTGGCAGAAGTAGTGCGTAGAGCTTGT
CGTTGGTAGATGCCACGAATCCGTTGGTTGTTCTCTCAAAATACGATACG
TCGTCGCGACATTGTGTCCCGGCCAGTGCACAGGAGCCGAAGCCAGCCGT
TGCATAAATTTATCGCTACCAGAGTGCCGTTAGGCCGCAAACTTCGGGCG
TCGTGCCACAAACGGGGCCATGGTTGAGTGTGTTTCTTTAGGCATTCATC
CGCGCTGGCCCCTGCTCGAGAAATTATTTTGCCCCTGACTCCGGTTTTCG
TCCGCCCCCCCCTGGCAGACAAAACGTAAGCGCCCTTGGGATATGGTGGC
CATAGTACACGGCTTCCCTTCCAAGTCTTCCGCGCTTCAATTTGAGGCCG
CCTGGCAGCACCCCCAACGAGATCGCCGCATCAAAGTAAAAGTGCGCGAC
TTGCCGGTGGACTCGCGTCGAACGGTCGGAGTACCGGGAAAGCTCCGACT
GTGCAAGGCCATGCTCTGCCTCGACCCTTGGGCAAGGTGGGGGATGATGT
TCACGTAACAGTCGCTCCCTCGTGTCATGCCCATCAGCATGTGTGTCATG
CAATGTTTTCCTCTTGATCGAAAAGGGTTAGCATTCCACTCACCCTGCAC
AAACGAAGCACTCACCCCGAGCACAAACCATTACCACGCCGACGCCACCG
CCGACACAGGTACGGCCTGGGCATTCGCTTCTTACGAGAAGAGTACGCCG
CGTCGTATGGCAAGTTGAACCTACCTCAGCCCCTCCCAGTGAAGGGCGAT
CCCGACACCGAGCTAAGCACGGGGGCGCAGGGGGGGCTACCGGTCTACAA
GTCGCCCCCTGGCTCTCAGGAGGAGCGTTTGGAAGCTCGGCGGCTATGCA
GGTGCGCTTTATGCGTGGAGTCGTTCTGTGCGGGAGCGATGTTGGTGTCC
TGCTACCACTGCGGGGCTTCGGTGCACGTGCGGTGCCTGGCCGGCCGAAT
GCTTCGCGACGCCGGCGACGACGTACGTGAGCTGATCCCCTCCGAGGGCA
ACTGTTGGGTGCCCGCTTGTTCGCGGCGCCTACTGTGGTCGCGGCTAGTG
AAGGAAGCGGGGGCGTATCGGCCCCGGGTGTCGCCGTCGACAGGCGGTGA
GGGTGACAACGTCAATGCAGCGGGCGGTGATGGCGGTGGTCCTCCGGTGT
GGCGAGTAGACGACAGTAGCGACGACGACGAGGACCATGAAGGCGGGGAC
GATGTTGATGGCCACGATTCTGACGGCGCAGGAGGATGGAGCAGCGATGT
GGGGTCGACGAGTTTCATTTCACAACCTTATCCGGAGGAGGAAGACGACG
AGGAGGACGACGATGACAGCTGCTGGAGGCTGAGTCCTGCACATTATCAA
AGAAAACGAGCGGGAAAGGGCTCCGACGGAAATGGGCAGCCAGAACGATT
TCCGGCTTCTGGAGAGATGCCGGGCGGGGTAAAGTCGCCAGCGCTTGCGA
ATGGGAACAAGCACATTTCGTTCGTTGATACCACCAGCGGTCGATACGAC
AGCGACGGTAGCGAGGGAGGGGACCAGATGACGAAGGACGCCGAACAATC
GCCACGCAAGCTACCGCTTGCAGAGCGACTGCGGTTAAGGAGGTTGAGGG
ATTGTTAA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1367:22068..24875+

>mRNA_E-siliculosus-1a_F_contig1367.2190.1 ID=mRNA_E-siliculosus-1a_F_contig1367.2190.1|Name=mRNA_E-siliculosus-1a_F_contig1367.2190.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2172bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1367:22068..24875+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCCCAAGGCCAATCCGCGCAAGAAATTCTTCCACTGCTACTTGCTGCA
GTCGCAAGACCCCAAGCACAAGCGGTCGACCTACATAGGCTTCACCGTGG
ATCCCGGTCGAAGAATCAGGCAACACAAATGCCCAAGGCCAATCCGCGCA
AGAAATTCTTCCACTGCTACTTGCTGCAGTCGCAAGACCCCAAGCACAAG
CGGTCGACCTACATAGGCTTCACCGTGGATCCCGGTCGAAGAATCAGGCA
ACACAACGGAGACATCAACGGCGGGGCATTCCGACGGAGACATCAACGGC
GGGGCATTCCGAACAAAACGTAAGCGCCCTTGGGATATGGTGGCCATAGT
ACACGGCTTCCCTTCCAAGTCTTCCGCGCTTCAATTTGAGGCCGCCTGGC
AGCACCCCCAACGAGATCGCCGCATCAAAGTAAAAGTGCGCGACTTGCCG
GTGGACTCGCGTCGAACGGTCGGAGTACCGGGAAAGCTCCGACTGTGCAA
GGCCATGCTCTGCCTCGACCCTTGGGCAAGACAAAACGTAAGCGCCCTTG
GGATATGGTGGCCATAGTACACGGCTTCCCTTCCAAGTCTTCCGCGCTTC
AATTTGAGGCCGCCTGGCAGCACCCCCAACGAGATCGCCGCATCAAAGTA
AAAGTGCGCGACTTGCCGGTGGACTCGCGTCGAACGGTCGGAGTACCGGG
AAAGCTCCGACTGTGCAAGGCCATGCTCTGCCTCGACCCTTGGGCAAGGT
ACGGCCTGGGCATTCGCTTCTTACGAGAAGAGTACGCCGCGTCGTATGGC
AAGTTGAACCTACCTCAGCCCCTCCCAGTGAAGGGCGATCCCGACACCGA
GCTAAGCACGGGGGCGCAGGGGGGGCTACCGGTCTACAAGTCGCCCCCTG
GCTCTCAGGAGGAGCGTTTGGAAGCTCGGCGGCTATGCAGGTGCGCTTTA
TGCGTACGGCCTGGGCATTCGCTTCTTACGAGAAGAGTACGCCGCGTCGT
ATGGCAAGTTGAACCTACCTCAGCCCCTCCCAGTGAAGGGCGATCCCGAC
ACCGAGCTAAGCACGGGGGCGCAGGGGGGGCTACCGGTCTACAAGTCGCC
CCCTGGCTCTCAGGAGGAGCGTTTGGAAGCTCGGCGGCTATGCAGGTGCG
CTTTATGCGGTGACAACGTCAATGCAGCGGGCGGTGATGGCGGTGGTCCT
CCGGTGTGGCGAGTAGACGACAGTAGCGACGACGACGAGGACCATGAAGG
CGGGGACGATGTTGATGGCCACGATTCTGACGGCGCAGGAGGATGGAGCA
GCGATGTGGGGTCGACGAGTTTCATTTCACAACCTTATCCGGAGGAGGAA
GACGACGAGGAGGACGACGATGACAGCTGCTGGAGGCTGAGTCCTGCACA
TTATCAAAGAAAACGAGCGGGAAAGGGCTCCGACGGAAATGGGCAGCCAG
AACGATTTCCGGCTTCTGGAGAGATGCCGGGCGGGGTAAAGTCGCCAGCG
CTTGCGAATGGGAACAAGCACATTTCGTTCGTTGATACCACCAGCGGTCG
ATACGACAGCGACGGTAGCGAGGGAGGGGACCAGATGACGAAGGACGCCG
AACAATCGCCACGCAAGCTACCGCTTGCAGAGCGACTGCGGTTAAGGAGG
TTGAGGGATTGTTAAGGTGACAACGTCAATGCAGCGGGCGGTGATGGCGG
TGGTCCTCCGGTGTGGCGAGTAGACGACAGTAGCGACGACGACGAGGACC
ATGAAGGCGGGGACGATGTTGATGGCCACGATTCTGACGGCGCAGGAGGA
TGGAGCAGCGATGTGGGGTCGACGAGTTTCATTTCACAACCTTATCCGGA
GGAGGAAGACGACGAGGAGGACGACGATGACAGCTGCTGGAGGCTGAGTC
CTGCACATTATCAAAGAAAACGAGCGGGAAAGGGCTCCGACGGAAATGGG
CAGCCAGAACGATTTCCGGCTTCTGGAGAGATGCCGGGCGGGGTAAAGTC
GCCAGCGCTTGCGAATGGGAACAAGCACATTTCGTTCGTTGATACCACCA
GCGGTCGATACGACAGCGACGGTAGCGAGGGAGGGGACCAGATGACGAAG
GACGCCGAACAATCGCCACGCAAGCTACCGCTTGCAGAGCGACTGCGGTT
AAGGAGGTTGAGGGATTGTTAA
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