prot_E-siliculosus-1a_F_contig1364.2177.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig1364.2177.1
Unique Nameprot_E-siliculosus-1a_F_contig1364.2177.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length350
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1364.2177.1 vs. uniprot
Match: D7G1S7_ECTSI (RanBP2-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1S7_ECTSI)

HSP 1 Score: 437 bits (1125), Expect = 4.390e-151
Identity = 306/350 (87.43%), Postives = 310/350 (88.57%), Query Frame = 0 
Query:    1 MLERRVDGGYQIFSPEIERDSPIAAQGGVVARTYERPRGRSLPKWDRTDDAVSTRPAXXXXXXXX-PASKLGLIGSGFSQQPWNCPACTYLNEDPAFRAACEICNTPRPSTVADAAGTGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPPPQIEACIPSGFSVGGGEAGGLPXXXXXVDDNEVDGILGGVSPGGGAFPVVSGADQSASGHCGSATAASASALGGGWEAGDEWQGFGSGSFGQESPVNCSPRQPTKAFEFSFGKSEAXXXXXXXXXXXXXVGDSTGDGNDGRGVDDVEFGREGCAP 349
            MLERRVDGGYQIFSPEIERDSPIAAQ GVVARTYERPRGRSLPKWDRTDDAVSTRPA XXXXXXX PASKLGLIGSGFSQQPWNCPACTYLNEDPAFRAACEICNTPRPS  ADA GTG+                      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  APPPQIEACIPSGFSVGGGEAGGLPXXXXXVDDNEVDGILGGVSPGGGAFPVVSGA Q+ASGHCGSATAASA+ALGGGWEAGDEWQGFGSGSFGQESPVNCS RQPTKAFEF+FG SEA XXXXXX      VGDSTGDGNDGRGVDDVEFGREGCAP
Sbjct:    1 MLERRVDGGYQIFSPEIERDSPIAAQRGVVARTYERPRGRSLPKWDRTDDAVSTRPAPXXXXXXXRPASKLGLIGSGFSQQPWNCPACTYLNEDPAFRAACEICNTPRPSAAADAVGTGTSGDGGEQRHDDWDDSEVLKSCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXV-APPPQIEACIPSGFSVGGGEAGGLPXXXXXVDDNEVDGILGGVSPGGGAFPVVSGAYQAASGHCGSATAASAAALGGGWEAGDEWQGFGSGSFGQESPVNCSSRQPTKAFEFAFGNSEAGXXXXXX------VGDSTGDGNDGRGVDDVEFGREGCAP 343
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BLAST of mRNA_E-siliculosus-1a_F_contig1364.2177.1 vs. uniprot
Match: A0A6H5KBW0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBW0_9PHAE)

HSP 1 Score: 392 bits (1008), Expect = 4.990e-124
Identity = 285/349 (81.66%), Postives = 292/349 (83.67%), Query Frame = 0 
Query:    1 MLERRVDGGYQIFSPEIERDSPIAAQGGVVARTYERPRGRSLPKWDRTDDAVSTRPAXXXXXXXXPASKLGLIGSGFSQQPWNCPACTYLNEDPAFRAACEICNTPRPSTVADAAGTGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPPPQIEACIPSGFSVGGGEAGGLPXXXXXVDDNEVDGILGGVSPGGGAFPVVSGADQSASGHCGSATAASASALGGGWEAGDEWQGFGSGSFGQESPVNCSPRQPTKAFEFSFGKSEAXXXXXXXXXXXXXVGDSTGDGNDGRGVDDVEFGREGCAP 349
            MLERRVDGGYQIFSPEIERDSPIAAQ GVVARTYERPRGRSLPKWDR+DDAVSTRP         PASKLGL+GSGFS QPWNCPACTYLNEDPAFRAACEICNTPRPS              XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX PPPQIEACIPSGFSVGGGEAGGLP     V+DNEVDGILGG+SPGGGAFPVVS  DQ+ S HCGSATAASA+ALGG WEAGDEWQGFGSGSFGQESPV CSPRQP  AFEFSF  SEA             V D  GDGNDGRGVD+VEFGREGCAP
Sbjct:  819 MLERRVDGGYQIFSPEIERDSPIAAQRGVVARTYERPRGRSLPKWDRSDDAVSTRPLPPPPPR--PASKLGLVGSGFSHQPWNCPACTYLNEDPAFRAACEICNTPRPSAAXXXX--------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPPQIEACIPSGFSVGGGEAGGLPVGGIEVEDNEVDGILGGISPGGGAFPVVSSTDQAESRHCGSATAASAAALGGSWEAGDEWQGFGSGSFGQESPVKCSPRQPATAFEFSFRNSEAGGGG---------VDDGAGDGNDGRGVDNVEFGREGCAP 1148
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1364.2177.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G1S7_ECTSI4.390e-15187.43RanBP2-type domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5KBW0_9PHAE4.990e-12481.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001876Zinc finger, RanBP2-typeSMARTSM00547zf_4coord: 80..106
e-value: 0.0023
score: 27.2
NoneNo IPR availableGENE3D2.20.28.140coord: 75..117
e-value: 1.2E-7
score: 33.4
IPR036443Zinc finger, RanBP2-type superfamilySUPERFAMILY90209Ran binding protein zinc finger-likecoord: 78..107

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1364contigE-siliculosus-1a_F_contig1364:22563..24514 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1364.2177.1mRNA_E-siliculosus-1a_F_contig1364.2177.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig1364 20639..25487 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig1364.2177.1 ID=prot_E-siliculosus-1a_F_contig1364.2177.1|Name=mRNA_E-siliculosus-1a_F_contig1364.2177.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=350bp
MLERRVDGGYQIFSPEIERDSPIAAQGGVVARTYERPRGRSLPKWDRTDD
AVSTRPAPAPPPPPRPASKLGLIGSGFSQQPWNCPACTYLNEDPAFRAAC
EICNTPRPSTVADAAGTGSGGGGGEQRYDDWDDNEVLKSCCGGGGSRGGG
GIPATASAMMSSFSPAAPPAVAAGGGPTAFASSVAAGAGAVAPPPQIEAC
IPSGFSVGGGEAGGLPVGGIEVDDNEVDGILGGVSPGGGAFPVVSGADQS
ASGHCGSATAASASALGGGWEAGDEWQGFGSGSFGQESPVNCSPRQPTKA
FEFSFGKSEAGGGGGGGGGGGGGVGDSTGDGNDGRGVDDVEFGREGCAP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036443Znf_RanBP2_sf
IPR001876Znf_RanBP2