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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1364.2177.1 vs. uniprot
Match: D7G1S7_ECTSI (RanBP2-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1S7_ECTSI) HSP 1 Score: 436 bits (1122), Expect = 4.730e-144 Identity = 306/350 (87.43%), Postives = 310/350 (88.57%), Query Frame = 1
Query: 397 MLERRVDGGYQIFSPEIERDSPIAAQGGVVARTYERPRGRSLPKWDRTDDAVSTRPAXXXXXXXX-PASKLGLIGSGFSQQPWNCPACTYLNEDPAFRAACEICNTPRPSTVADAAGTGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPPPQIEACIPSGFSVGGGEAGGLPXXXXXVDDNEVDGILGGVSPGGGAFPVVSGADQSASGHCGSATAASASALGGGWEAGDEWQGFGSGSFGQESPVNCSPRQPTKAFEFSFGKSEAXXXXXXXXXXXXXVGDSTGDGNDGRGVDDVEFGREGCAP 1443
MLERRVDGGYQIFSPEIERDSPIAAQ GVVARTYERPRGRSLPKWDRTDDAVSTRPA XXXXXXX PASKLGLIGSGFSQQPWNCPACTYLNEDPAFRAACEICNTPRPS ADA GTG+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX APPPQIEACIPSGFSVGGGEAGGLPXXXXXVDDNEVDGILGGVSPGGGAFPVVSGA Q+ASGHCGSATAASA+ALGGGWEAGDEWQGFGSGSFGQESPVNCS RQPTKAFEF+FG SEA XXXXXX VGDSTGDGNDGRGVDDVEFGREGCAP
Sbjct: 1 MLERRVDGGYQIFSPEIERDSPIAAQRGVVARTYERPRGRSLPKWDRTDDAVSTRPAPXXXXXXXRPASKLGLIGSGFSQQPWNCPACTYLNEDPAFRAACEICNTPRPSAAADAVGTGTSGDGGEQRHDDWDDSEVLKSCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXV-APPPQIEACIPSGFSVGGGEAGGLPXXXXXVDDNEVDGILGGVSPGGGAFPVVSGAYQAASGHCGSATAASAAALGGGWEAGDEWQGFGSGSFGQESPVNCSSRQPTKAFEFAFGNSEAGXXXXXX------VGDSTGDGNDGRGVDDVEFGREGCAP 343
BLAST of mRNA_E-siliculosus-1a_F_contig1364.2177.1 vs. uniprot
Match: A0A6H5KBW0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBW0_9PHAE) HSP 1 Score: 416 bits (1068), Expect = 2.370e-126 Identity = 297/362 (82.04%), Postives = 304/362 (83.98%), Query Frame = 1
Query: 358 WGEKNKVGGVIVGMLERRVDGGYQIFSPEIERDSPIAAQGGVVARTYERPRGRSLPKWDRTDDAVSTRPAXXXXXXXXPASKLGLIGSGFSQQPWNCPACTYLNEDPAFRAACEICNTPRPSTVADAAGTGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPPPQIEACIPSGFSVGGGEAGGLPXXXXXVDDNEVDGILGGVSPGGGAFPVVSGADQSASGHCGSATAASASALGGGWEAGDEWQGFGSGSFGQESPVNCSPRQPTKAFEFSFGKSEAXXXXXXXXXXXXXVGDSTGDGNDGRGVDDVEFGREGCAP 1443
WGEK KVGGVIVGMLERRVDGGYQIFSPEIERDSPIAAQ GVVARTYERPRGRSLPKWDR+DDAVSTRP PASKLGL+GSGFS QPWNCPACTYLNEDPAFRAACEICNTPRPS XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX PPPQIEACIPSGFSVGGGEAGGLP V+DNEVDGILGG+SPGGGAFPVVS DQ+ S HCGSATAASA+ALGG WEAGDEWQGFGSGSFGQESPV CSPRQP AFEFSF SEA V D GDGNDGRGVD+VEFGREGCAP
Sbjct: 806 WGEKKKVGGVIVGMLERRVDGGYQIFSPEIERDSPIAAQRGVVARTYERPRGRSLPKWDRSDDAVSTRPLPPPPPR--PASKLGLVGSGFSHQPWNCPACTYLNEDPAFRAACEICNTPRPSAAXXXX--------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPPQIEACIPSGFSVGGGEAGGLPVGGIEVEDNEVDGILGGISPGGGAFPVVSSTDQAESRHCGSATAASAAALGGSWEAGDEWQGFGSGSFGQESPVKCSPRQPATAFEFSFRNSEAGGGG---------VDDGAGDGNDGRGVDNVEFGREGCAP 1148
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 1050 |
| Model size | 2419 |
| Exons | 6 |
| Hectar predicted targeting category | other localisation |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1364.2177.1 >prot_E-siliculosus-1a_F_contig1364.2177.1 ID=prot_E-siliculosus-1a_F_contig1364.2177.1|Name=mRNA_E-siliculosus-1a_F_contig1364.2177.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=350bp
MLERRVDGGYQIFSPEIERDSPIAAQGGVVARTYERPRGRSLPKWDRTDD
AVSTRPAPAPPPPPRPASKLGLIGSGFSQQPWNCPACTYLNEDPAFRAAC
EICNTPRPSTVADAAGTGSGGGGGEQRYDDWDDNEVLKSCCGGGGSRGGG
GIPATASAMMSSFSPAAPPAVAAGGGPTAFASSVAAGAGAVAPPPQIEAC
IPSGFSVGGGEAGGLPVGGIEVDDNEVDGILGGVSPGGGAFPVVSGADQS
ASGHCGSATAASASALGGGWEAGDEWQGFGSGSFGQESPVNCSPRQPTKA
FEFSFGKSEAGGGGGGGGGGGGGVGDSTGDGNDGRGVDDVEFGREGCAP* back to topmRNA from alignment at E-siliculosus-1a_F_contig1364:20639..25487+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1364.2177.1 ID=mRNA_E-siliculosus-1a_F_contig1364.2177.1|Name=mRNA_E-siliculosus-1a_F_contig1364.2177.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4849bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1364:20639..25487+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GTGGTGAGACCGTTGCCGGGGACTGCTCCTGCGTCCGTGGACAGCGGCTC
TTCCCGAGGAGGTGTGTGAGAGCGTGTGAGAGTCGATCGATCGATCGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGAGAGAGAGAGA
GAGAGATGTACAGCAGTAGAATCGTGAAGTCGAGGAGTGATTGCGCATCC
CCTTTAGGGTGTGTGTGCTCATAGCCGTGAATGCCGTCCATTGACGTCGC
GTCCCGACAGATATGGGGGAGGGGCTTACGCATGCTTTGCATGCCTTAGT
TATTGGACCATTGGCGACGCGTCTTGGAGAGGAGGACGGAGCATTGTTCC
CACAGTAAAACCAATCACCGGTGCCCAATTCCTTCCTACTTTGCCCAAGG
TGGCTCTAACAATGTGTGTGTGATGGAGTGAGTTTCGAAGCTCGATTGCT
GGTTCACACCCGAGAGGGAGCGAAGACGCGTCGGGACCGATTCGTTCACG
GCGGGACATACGTATGTTACATGACGTAAGATATCACACCCCCTTGACCG
ATTTTCGGAGCTCGATTACTCCACGACGAAGGTGATGGATGCCACATCAG
TCAAACGAATGGTGCGTTTTCGGAAAGCTCTCGATGAGACGGCTCCAATG
CCGCTATTTCCGGCACCACTACCGCCACTGTTTCTGCTGTGGAGTCATCG
AGCTTTTAAATCGGCCAATGGTGTGTGATATCTTACGTCATGTCGCCTCG
GCGGTAGTACAAGATCGTTCCCAAGACGGCTCGTTTTTTTCCCGGCAAAG
TGCCATCCTATTGAAATTTTGCGGAGCAATCGAGGGTGGGCCATGATGAA
AATGTGTGTGTGTGTGTACGACTCTCGCACCGTATTTTTCGGTGCTTGTG
ATTTTTGCGGGGCACCGCATCGACCGCTTCACCCACCGAACGTTCGCGTT
CGCCCGTGTCCACCACGGCCGTTCTCGCCCCCTGCCCCGCTGGCGTGTGA
TTTGATTCTTCCCAAAAAACAAAAAAAAGCGGCGGAATACGACCGACCAG
ACCTTTGCCAAGAAATCGAGCACGTGGTCTCGTTCCCCTGGCCGGAGGCC
GAGGCACTCGCTCGCGCGCGGCAGGAGACCGCCGAGGCGCTCCGCTCCGC
GTCGTCGACGGCGGCGGGGGCGGCGGCGGCGGCGGCGGTAGGGATCGAGG
GCGGCGGGGGCGACCTCGGGAGCATCGGCGGCAGCGGCGGCGGTAGCGGC
GGCGGCGGCGGCGGCGGCCAGGAAGAGGGACTCTCGGCTGCTGCTGCTGC
TGCACCTCCGAGCGACAGCCACTTTCAGGCGCCCGCCGCCACCGCCGCCG
CCGCCGCCGCACCATTGTCGCTGTCGTCGCAGTCCTACGGCGGTGGCGGT
GCTCGAAGCCCGCCCTCCTGGGGCGAGAAGGTGACCGAAACCTAACACAT
GGGTAGGGAATGCAGTCGTTGTCTAGTGTTTGTTGAGTATCGCGAACGTC
GACTGGCAGTGCTACACACTGGCGTGCGTTGGAATAAAGGCACACCGAAT
GGCTGTGATTCATTTCGATTTCCGCGCAGGGGTCGGAACGATCGCGCAGG
TCCAAGGTTTGTTTTGCCCAGGGATGTGAAGACAGAATAACGATTGGAAA
TGGAATGACATGATATTGAGTCAATCGATCACTCACCTGTTGTGTGCACC
CGCTGTGCCTTTTGCCGCACGGCAGTACTCACGCACGTTGAAACGTTTTC
AGCACGCAGTGGTGCGTGTCGTGTTTGGTCTTTATGTCGCGAGATCACGC
CGCCCTGGGTTTTTGCGTCTCGTGTCATTGTTATTTCTTTTACGCCTTTT
ATCCCCACGTACGCGATGTACCTTCACCATTCTTCCACTTTCCACAGAAT
AAGGTTGGTGGGGTGATCGTCGGCATGCTGGAGCGCCGGGTCGACGGCGG
ATACCAGATCTTTTCTCCAGAGGTGGGTACCCAATCTTGGTTCCCACGGT
GCACCCCCCCCCCCTATTTTGCATTCTAGAGGGACATTCCAGTGAAGTAT
TTTTTGGCACGCGACACCGAGTCTGATGTGCACGTGTTCTTTCGTGTACA
CTCCTTTTGAATGCAACCGTTTTCTTTCCCAACCAGCTGGACGCACCCAG
TCAACACGCTCGACGTACCGCTGAGTGCTGTCAAGCAACTCGGTGACCGT
CGGAACGTTGTGTTGTTTTTGTTTTTTCTCTGTCCCTGGTCAGATTGAGC
GAGATTCTCCCATCGCCGCCCAGGGTGGCGTCGTAGCACGCACGTACGAG
CGCCCCCGCGGCCGCTCTTTGCCGAAGTGGGACCGAACCGACGACGCTGT
GTCCACGAGGCCGGCGCCGGCGCCGCCGCCGCCGCCGCGACCGGCCTCAA
AGCTGGGCTTGATCGGAAGCGGGTTTTCGCAGCAGGTATGCTGTACCTTG
TGTATTTGGGATGAAGTTGTTCGGTCGATGTTATCCCCCCCCCCGTCGGA
AGGCCTTGGTGGCTCGCAGTCAATCAAGATTTTAGTCGTGGTGATCTCGA
GGGGGTCGGTCAAGAGGGCTTCGGATTTTTCGTGGGCTCTCGTCATGTTT
GTGCCGTCCTCCCCCGGCAATTCCGGATGGGGAAACCTGGATAACTTTGC
TGTTGATCATCTACGAAGAGTTGATGGTAGTTTCAGGCTGTCGACGTACA
AGCTTCGAGTTTCAGAGCCGCATCGTCGAGCATTTTGGACGTACTACGGC
GAAATTTTGTTCTGGACGAAGCTGGTGATTTCGTGTACGTAGGCGTTGCT
TTTCCCTTCGCTTGCTGTATCACGCCTGAGGAAACGCTTGCGTTGTCCCT
GTAATTCGCGCGTTGGTTCTCGCGTGCGCTCTCAAGCAATGCCGCCCCGA
CTGCGCCCTCCCCCCTACACCGGTCTAACAGCTAAGGCATGCAAAAACAT
GGATACGCCCCCCACACCATCCTCCTTTGATGCCACGTGCTCGTGTGCCT
GTTTTCTCATCGCAAAATGCGTGTTTCCCAAAACAAAAAATCTCGTGTGC
GTGGTAAATAAAACAGCCGTGGAACTGCCCGGCGTGCACGTACCTGAACG
AGGACCCCGCGTTTCGCGCCGCCTGCGAGATCTGCAACACCCCCCGCCCG
AGCACCGTCGCCGACGCCGCCGGCACCGGCTCCGGCGGAGGCGGCGGCGA
GCAGCGGTACGACGATTGGGACGACAACGAGGTCCTGAAAAGCTGCTGCG
GCGGCGGCGGCTCGAGGGGAGGAGGAGGGATACCGGCGACGGCGAGCGCG
ATGATGTCTTCGTTTTCGCCGGCAGCGCCACCGGCGGTGGCGGCGGGGGG
AGGGCCGACGGCATTCGCCTCTTCCGTTGCCGCTGGCGCCGGCGCCGTGG
CACCGCCGCCTCAGATCGAAGCGTGCATCCCCAGCGGTTTTTCTGTCGGC
GGCGGCGAAGCGGGCGGCCTTCCAGTAGGCGGGATCGAGGTTGATGATAA
CGAGGTAGATGGGATTCTGGGAGGCGTTTCTCCAGGGGGCGGGGCTTTCC
CGGTCGTTTCTGGCGCCGATCAGTCCGCGAGCGGGCATTGCGGTAGTGCC
ACCGCTGCTTCCGCCTCCGCCCTGGGTGGGGGTTGGGAAGCGGGGGACGA
GTGGCAGGGATTCGGAAGCGGGTCGTTCGGGCAGGAGTCCCCCGTCAACT
GCTCTCCGCGTCAACCCACGAAGGCGTTTGAGTTTTCGTTTGGAAAGTCG
GAGGCTGGCGGCGGCGGCGGCGGCGGCGGAGGCGGCGGCGGCGGTGTCGG
CGATAGTACTGGTGATGGCAATGATGGCAGAGGAGTTGACGACGTGGAGT
TTGGGAGAGAAGGGTGCGCACCGTGAGGCAAGACCCGCCGCTTGTGTTTT
CGCCAATTTAGTGCCTGCGGAAGGTTTGTTGTGTTTCCTGCCGCGCAAAG
CTGGTGAGCACTTGGACCAATCTCTCGTCGATGCGCGGGTTTGTTTCCAA
TACCTCAATATCTCTTCGTGGATGGTTTCGTCGGTGTACCGAGTCAGTGA
GTGCATGCATGTGTTGTAGTAGGGTTTTCCTGTCGAGGTGTTTTGATCTT
GTTGGTGGTGTAGACTTATACATACGTGCAAGGGCCTGTGCGCTCTTTCT
TGATTGTGTGTATTTCGCCCCAAGAGAGTGGTTTGAGTGGTCGGGTACGT
GTTCACTACCCTAGAGTTTGGCATGGTAACCAGTAGACCGACCAGTAGAC
CGACCGCTTCTAGAATTTTCGGCACGCTGCTGAGGTCGAAGCCATGTAGA
TTCTCAAATTGAAAGTATGAGCGATCAGACTTTCGTTGGGAGAGGTGAAG
CCATGCAGGTTCTCGACGAAGCGAAAGTATGAGCGATCACACTTTCGTTC
GGATATTTCTTACCGTTTTTGCCAATCCTCCGTGGCGCAAGAAGCCACAT
CTCACCCGTCCGTCTAATACATAAGCGTCTGAGTTCTCACCGCCCCCTCA
GCAATGTTCAAAGCCTTCATGGTATCTATTGGCGGTGGCTGTCGTCGGGT
CTGCTGGGAGGTTAGGCTAGGGTGTGCGTCTTCGCGCACAGCAGCAACCG
CGCCCCACACGCGGCGCTGCCGATCACGGTTGTTTGCCCTAACCTATCAA
TGAGTTGGTCTCGGAGTGAAGCACCTTTGACCACCACCAGGAGAGAAGGC
GACGGATTCCGGGGAACCGGGGGTTACTGCGTGTGGGCGTGTTTCTTATT
GTATCCGCCGACGCTGCCAGCCAGTCTGATACTACATGTTCCGTACGCAC
ACGATCGATACACACGAAAAATTCATACATGAGTGAATTGAGAATGGTG back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1364:20639..25487+ >mRNA_E-siliculosus-1a_F_contig1364.2177.1 ID=mRNA_E-siliculosus-1a_F_contig1364.2177.1|Name=mRNA_E-siliculosus-1a_F_contig1364.2177.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2100bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1364:20639..25487+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCTGGAGCGCCGGGTCGACGGCGGATACCAGATCTTTTCTCCAGAGAT
GCTGGAGCGCCGGGTCGACGGCGGATACCAGATCTTTTCTCCAGAGATTG
AGCGAGATTCTCCCATCGCCGCCCAGGGTGGCGTCGTAGCACGCACGTAC
GAGCGCCCCCGCGGCCGCTCTTTGCCGAAGTGGGACCGAACCGACGACGC
TGTGTCCACGAGGCCGGCGCCGGCGCCGCCGCCGCCGCCGCGACCGGCCT
CAAAGCTGGGCTTGATCGGAAGCGGGTTTTCGCAGCAGATTGAGCGAGAT
TCTCCCATCGCCGCCCAGGGTGGCGTCGTAGCACGCACGTACGAGCGCCC
CCGCGGCCGCTCTTTGCCGAAGTGGGACCGAACCGACGACGCTGTGTCCA
CGAGGCCGGCGCCGGCGCCGCCGCCGCCGCCGCGACCGGCCTCAAAGCTG
GGCTTGATCGGAAGCGGGTTTTCGCAGCAGCCGTGGAACTGCCCGGCGTG
CACGTACCTGAACGAGGACCCCGCGTTTCGCGCCGCCTGCGAGATCTGCA
ACACCCCCCGCCCGAGCACCGTCGCCGACGCCGCCGGCACCGGCTCCGGC
GGAGGCGGCGGCGAGCAGCGGTACGACGATTGGGACGACAACGAGGTCCT
GAAAAGCTGCTGCGGCGGCGGCGGCTCGAGGGGAGGAGGAGGGATACCGG
CGACGGCGAGCGCGATGATGTCTTCGTTTTCGCCGGCAGCGCCACCGGCG
GTGGCGGCGGGGGGAGGGCCGACGGCATTCGCCTCTTCCGTTGCCGCTGG
CGCCGGCGCCGTGGCACCGCCGCCTCAGATCGAAGCGTGCATCCCCAGCG
GTTTTTCTGTCGGCGGCGGCGAAGCGGGCGGCCTTCCAGTAGGCGGGATC
GAGGTTGATGATAACGAGGTAGATGGGATTCTGGGAGGCGTTTCTCCAGG
GGGCGGGGCTTTCCCGGTCGTTTCTGGCGCCGATCAGTCCGCGAGCGGGC
ATTGCGGTAGTGCCACCGCTGCTTCCGCCTCCGCCCTGGGTGGGGGTTGG
GAAGCGGGGGACGAGTGGCAGGGATTCGGAAGCGGGTCGTTCGGGCAGGA
GTCCCCCGTCAACTGCTCTCCGCGTCAACCCACGAAGGCGTTTGAGTTTT
CGTTTGGAAAGTCGGAGGCTGGCGGCGGCGGCGGCGGCGGCGGAGGCGGC
GGCGGCGGTGTCGGCGATAGTACTGGTGATGGCAATGATGGCAGAGGAGT
TGACGACGTGGAGTTTGGGAGAGAAGGGTGCGCACCGTGACCGTGGAACT
GCCCGGCGTGCACGTACCTGAACGAGGACCCCGCGTTTCGCGCCGCCTGC
GAGATCTGCAACACCCCCCGCCCGAGCACCGTCGCCGACGCCGCCGGCAC
CGGCTCCGGCGGAGGCGGCGGCGAGCAGCGGTACGACGATTGGGACGACA
ACGAGGTCCTGAAAAGCTGCTGCGGCGGCGGCGGCTCGAGGGGAGGAGGA
GGGATACCGGCGACGGCGAGCGCGATGATGTCTTCGTTTTCGCCGGCAGC
GCCACCGGCGGTGGCGGCGGGGGGAGGGCCGACGGCATTCGCCTCTTCCG
TTGCCGCTGGCGCCGGCGCCGTGGCACCGCCGCCTCAGATCGAAGCGTGC
ATCCCCAGCGGTTTTTCTGTCGGCGGCGGCGAAGCGGGCGGCCTTCCAGT
AGGCGGGATCGAGGTTGATGATAACGAGGTAGATGGGATTCTGGGAGGCG
TTTCTCCAGGGGGCGGGGCTTTCCCGGTCGTTTCTGGCGCCGATCAGTCC
GCGAGCGGGCATTGCGGTAGTGCCACCGCTGCTTCCGCCTCCGCCCTGGG
TGGGGGTTGGGAAGCGGGGGACGAGTGGCAGGGATTCGGAAGCGGGTCGT
TCGGGCAGGAGTCCCCCGTCAACTGCTCTCCGCGTCAACCCACGAAGGCG
TTTGAGTTTTCGTTTGGAAAGTCGGAGGCTGGCGGCGGCGGCGGCGGCGG
CGGAGGCGGCGGCGGCGGTGTCGGCGATAGTACTGGTGATGGCAATGATG
GCAGAGGAGTTGACGACGTGGAGTTTGGGAGAGAAGGGTGCGCACCGTGA back to top
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