prot_E-siliculosus-1a_F_contig1364.2174.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig1364.2174.1
Unique Nameprot_E-siliculosus-1a_F_contig1364.2174.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length473
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1364.2174.1 vs. uniprot
Match: A0A6H5KBW0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBW0_9PHAE)

HSP 1 Score: 264 bits (675), Expect = 1.100e-74
Identity = 142/179 (79.33%), Postives = 144/179 (80.45%), Query Frame = 0 
Query:  228 EALPQGSGGDPWASSKRQLPLPLQPLAGRCNFRGCGRISVFRCGRCRAAFYCNRDHQRSDWAWHRRVCDEGKGEPPPPLARLVLPAQRQKAVGWADSTRVVPASAADAGGGG------CSPPAWEGGGAGGSXXXXXXRVGGVRHGXGGGFGSGANSAAFRENRSRLEAAMASAAHSPA 400
            EA P  SGGDPWASSKRQLPLPLQPLAGRCNF GCG+ISVFRC RCRAAFYCNRDHQRSDWAWHRRVCDEGKGEPPPPLARLVLPAQRQKAVGWADST+VVPA               CS PAWEGG AGGS      RV GVRHGX      GANSAAFRENRSRLEAAMASAAHSPA
Sbjct:  219 EATPHCSGGDPWASSKRQLPLPLQPLAGRCNFEGCGQISVFRCRRCRAAFYCNRDHQRSDWAWHRRVCDEGKGEPPPPLARLVLPAQRQKAVGWADSTKVVPAXXXXXXXXXXXXXXXCSSPAWEGGSAGGSGAKGSGRVEGVRHGXXXXXXXGANSAAFRENRSRLEAAMASAAHSPA 397
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BLAST of mRNA_E-siliculosus-1a_F_contig1364.2174.1 vs. uniprot
Match: D7G1S8_ECTSI (Egl nine homolog 1 (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1S8_ECTSI)

HSP 1 Score: 199 bits (506), Expect = 9.880e-59
Identity = 103/119 (86.55%), Postives = 106/119 (89.08%), Query Frame = 0 
Query:  265 ISVFRCGRCRAAFYCNRDHQRSDWAWHRRVCDEGKGEPPPPLARLVLPAQRQKAVGWADSTRVVPASAADAG--GGGCSPPAWEGGGAGGSXXXXXXRVGGVRHGXGGGFGSGANSAAF 381
            IS+FRCGRCRAAFYCNRDHQRSDWAWHRRVCDEGKGEPPPPLARLVLPAQ+QKAVGWADSTRVVPASAA A   GGG SPPAWEGGGAG +      RVGGVRHG GGGFGSGANSAAF
Sbjct:   30 ISLFRCGRCRAAFYCNRDHQRSDWAWHRRVCDEGKGEPPPPLARLVLPAQKQKAVGWADSTRVVPASAASAADRGGGFSPPAWEGGGAGDNGAKGSGRVGGVRHGGGGGFGSGANSAAF 148
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BLAST of mRNA_E-siliculosus-1a_F_contig1364.2174.1 vs. uniprot
Match: A0A0C2CTP1_9DELT (MYND-type domain-containing protein n=1 Tax=Enhygromyxa salina TaxID=215803 RepID=A0A0C2CTP1_9DELT)

HSP 1 Score: 53.1 bits (126), Expect = 2.630e-5
Identity = 18/34 (52.94%), Postives = 26/34 (76.47%), Query Frame = 0 
Query:  262 CGRISVFRCGRCRAAFYCNRDHQRSDWAWHRRVC 295
            CG+ ++ RC RC A FYC ++HQR DWA H+++C
Sbjct:   63 CGKSTIQRCARCAAVFYCGKEHQRRDWARHKKLC 96
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BLAST of mRNA_E-siliculosus-1a_F_contig1364.2174.1 vs. uniprot
Match: A0A6A6JJX3_9PLEO (MYND-type zinc finger protein samB n=1 Tax=Westerdykella ornata TaxID=318751 RepID=A0A6A6JJX3_9PLEO)

HSP 1 Score: 56.6 bits (135), Expect = 4.430e-5
Identity = 22/37 (59.46%), Postives = 28/37 (75.68%), Query Frame = 0 
Query:  262 CGRISVFRCGRCRAAFYCNRDHQRSDWAWHRRVCDEG 298
            CG+ +  +CGRC+ A+YCNRD QRSDW  HR+ C EG
Sbjct:   12 CGKSASLQCGRCKNAWYCNRDCQRSDWKTHRKDCSEG 48
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1364.2174.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KBW0_9PHAE1.100e-7479.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1S8_ECTSI9.880e-5986.55Egl nine homolog 1 (Partial) (Fragment) n=1 Tax=Ec... [more]
A0A0C2CTP1_9DELT2.630e-552.94MYND-type domain-containing protein n=1 Tax=Enhygr... [more]
A0A6A6JJX3_9PLEO4.430e-559.46MYND-type zinc finger protein samB n=1 Tax=Westerd... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 100..120
NoneNo IPR availableGENE3D3.30.60.180coord: 253..297
e-value: 1.8E-10
score: 42.4
NoneNo IPR availableSUPERFAMILY144232HIT/MYND zinc finger-likecoord: 256..296
IPR002893Zinc finger, MYND-typePFAMPF01753zf-MYNDcoord: 261..295
e-value: 4.5E-8
score: 33.0
IPR002893Zinc finger, MYND-typePROSITEPS50865ZF_MYND_2coord: 259..295
score: 10.203

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1364contigE-siliculosus-1a_F_contig1364:17373..19239 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1364.2174.1mRNA_E-siliculosus-1a_F_contig1364.2174.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig1364 17373..19239 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig1364.2174.1 ID=prot_E-siliculosus-1a_F_contig1364.2174.1|Name=mRNA_E-siliculosus-1a_F_contig1364.2174.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=473bp
MPAVSDGPLTGGGGGGGGGGKERGSVSLRIRRRRLSFDGAVDRVPRWWEA
AGAEEERGGAIGAAVSGVTAAAAQQRKRANTWCSSSGSTGSATAVSTSLL
VRAEEEEEEEEEEMHCRADERNNTEEAAATFVTAAIEAAAAAAAAAAEGE
EATSTTASVGGGGGAAAGEGTTSIPTVASTAKESDSGAAAAAVAVPTRTT
TPATIVSGEAASSEAAAAAEEAVAASSEALPQGSGGDPWASSKRQLPLPL
QPLAGRCNFRGCGRISVFRCGRCRAAFYCNRDHQRSDWAWHRRVCDEGKG
EPPPPLARLVLPAQRQKAVGWADSTRVVPASAADAGGGGCSPPAWEGGGA
GGSGAKGSGRVGGVRHGGGGGFGSGANSAAFRENRSRLEAAMASAAHSPA
AAIDGGGGGGGFDPTHVRTSRGGASWTVPASNDNGGGAGSAAVWPASSSS
SGGAGIWQRGRLASRLPPSGCPP
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002893Znf_MYND