mRNA_E-siliculosus-1a_F_contig1364.2174.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1364.2174.1
Unique NamemRNA_E-siliculosus-1a_F_contig1364.2174.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1364.2174.1 vs. uniprot
Match: A0A6H5KBW0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBW0_9PHAE)

HSP 1 Score: 264 bits (675), Expect = 1.100e-74
Identity = 142/179 (79.33%), Postives = 144/179 (80.45%), Query Frame = 1 
Query:  682 EALPQGSGGDPWASSKRQLPLPLQPLAGRCNFRGCGRISVFRCGRCRAAFYCNRDHQRSDWAWHRRVCDEGKGEPPPPLARLVLPAQRQKAVGWADSTRVVPASAADAGGGG------CSPPAWEGGGAGGSXXXXXXRVGGVRHGXGGGFGSGANSAAFRENRSRLEAAMASAAHSPA 1200
            EA P  SGGDPWASSKRQLPLPLQPLAGRCNF GCG+ISVFRC RCRAAFYCNRDHQRSDWAWHRRVCDEGKGEPPPPLARLVLPAQRQKAVGWADST+VVPA               CS PAWEGG AGGS      RV GVRHGX      GANSAAFRENRSRLEAAMASAAHSPA
Sbjct:  219 EATPHCSGGDPWASSKRQLPLPLQPLAGRCNFEGCGQISVFRCRRCRAAFYCNRDHQRSDWAWHRRVCDEGKGEPPPPLARLVLPAQRQKAVGWADSTKVVPAXXXXXXXXXXXXXXXCSSPAWEGGSAGGSGAKGSGRVEGVRHGXXXXXXXGANSAAFRENRSRLEAAMASAAHSPA 397
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BLAST of mRNA_E-siliculosus-1a_F_contig1364.2174.1 vs. uniprot
Match: D7G1S8_ECTSI (Egl nine homolog 1 (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1S8_ECTSI)

HSP 1 Score: 199 bits (506), Expect = 9.880e-59
Identity = 103/119 (86.55%), Postives = 106/119 (89.08%), Query Frame = 1 
Query:  793 ISVFRCGRCRAAFYCNRDHQRSDWAWHRRVCDEGKGEPPPPLARLVLPAQRQKAVGWADSTRVVPASAADAG--GGGCSPPAWEGGGAGGSXXXXXXRVGGVRHGXGGGFGSGANSAAF 1143
            IS+FRCGRCRAAFYCNRDHQRSDWAWHRRVCDEGKGEPPPPLARLVLPAQ+QKAVGWADSTRVVPASAA A   GGG SPPAWEGGGAG +      RVGGVRHG GGGFGSGANSAAF
Sbjct:   30 ISLFRCGRCRAAFYCNRDHQRSDWAWHRRVCDEGKGEPPPPLARLVLPAQKQKAVGWADSTRVVPASAASAADRGGGFSPPAWEGGGAGDNGAKGSGRVGGVRHGGGGGFGSGANSAAF 148
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BLAST of mRNA_E-siliculosus-1a_F_contig1364.2174.1 vs. uniprot
Match: A0A0C2CTP1_9DELT (MYND-type domain-containing protein n=1 Tax=Enhygromyxa salina TaxID=215803 RepID=A0A0C2CTP1_9DELT)

HSP 1 Score: 53.1 bits (126), Expect = 2.630e-5
Identity = 18/34 (52.94%), Postives = 26/34 (76.47%), Query Frame = 1 
Query:  784 CGRISVFRCGRCRAAFYCNRDHQRSDWAWHRRVC 885
            CG+ ++ RC RC A FYC ++HQR DWA H+++C
Sbjct:   63 CGKSTIQRCARCAAVFYCGKEHQRRDWARHKKLC 96
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BLAST of mRNA_E-siliculosus-1a_F_contig1364.2174.1 vs. uniprot
Match: A0A6A6JJX3_9PLEO (MYND-type zinc finger protein samB n=1 Tax=Westerdykella ornata TaxID=318751 RepID=A0A6A6JJX3_9PLEO)

HSP 1 Score: 56.6 bits (135), Expect = 4.430e-5
Identity = 22/37 (59.46%), Postives = 28/37 (75.68%), Query Frame = 1 
Query:  784 CGRISVFRCGRCRAAFYCNRDHQRSDWAWHRRVCDEG 894
            CG+ +  +CGRC+ A+YCNRD QRSDW  HR+ C EG
Sbjct:   12 CGKSASLQCGRCKNAWYCNRDCQRSDWKTHRKDCSEG 48
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1364.2174.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KBW0_9PHAE1.100e-7479.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1S8_ECTSI9.880e-5986.55Egl nine homolog 1 (Partial) (Fragment) n=1 Tax=Ec... [more]
A0A0C2CTP1_9DELT2.630e-552.94MYND-type domain-containing protein n=1 Tax=Enhygr... [more]
A0A6A6JJX3_9PLEO4.430e-559.46MYND-type zinc finger protein samB n=1 Tax=Westerd... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1364contigE-siliculosus-1a_F_contig1364:17373..19239 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size1419
Model size1420
Exons2
Ec32 orthologEc-07_004300.1
Ec32 ortholog descriptionZinc finger, MYND-type
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927880.868212-CDS-E-siliculosus-1a_F_contig1364:17372..181641622927880.868212-CDS-E-siliculosus-1a_F_contig1364:17372..18164Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1364 17373..18164 +
1696318720.6834064-CDS-E-siliculosus-1a_F_contig1364:17372..181641696318720.6834064-CDS-E-siliculosus-1a_F_contig1364:17372..18164Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1364 17373..18164 +
1622927880.8801773-CDS-E-siliculosus-1a_F_contig1364:18612..192391622927880.8801773-CDS-E-siliculosus-1a_F_contig1364:18612..19239Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1364 18613..19239 +
1696318720.6912322-CDS-E-siliculosus-1a_F_contig1364:18612..192391696318720.6912322-CDS-E-siliculosus-1a_F_contig1364:18612..19239Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1364 18613..19239 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1364.2174.1prot_E-siliculosus-1a_F_contig1364.2174.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1364 17373..19239 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1364.2174.1

>prot_E-siliculosus-1a_F_contig1364.2174.1 ID=prot_E-siliculosus-1a_F_contig1364.2174.1|Name=mRNA_E-siliculosus-1a_F_contig1364.2174.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=473bp
MPAVSDGPLTGGGGGGGGGGKERGSVSLRIRRRRLSFDGAVDRVPRWWEA
AGAEEERGGAIGAAVSGVTAAAAQQRKRANTWCSSSGSTGSATAVSTSLL
VRAEEEEEEEEEEMHCRADERNNTEEAAATFVTAAIEAAAAAAAAAAEGE
EATSTTASVGGGGGAAAGEGTTSIPTVASTAKESDSGAAAAAVAVPTRTT
TPATIVSGEAASSEAAAAAEEAVAASSEALPQGSGGDPWASSKRQLPLPL
QPLAGRCNFRGCGRISVFRCGRCRAAFYCNRDHQRSDWAWHRRVCDEGKG
EPPPPLARLVLPAQRQKAVGWADSTRVVPASAADAGGGGCSPPAWEGGGA
GGSGAKGSGRVGGVRHGGGGGFGSGANSAAFRENRSRLEAAMASAAHSPA
AAIDGGGGGGGFDPTHVRTSRGGASWTVPASNDNGGGAGSAAVWPASSSS
SGGAGIWQRGRLASRLPPSGCPP
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mRNA from alignment at E-siliculosus-1a_F_contig1364:17373..19239+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1364.2174.1 ID=mRNA_E-siliculosus-1a_F_contig1364.2174.1|Name=mRNA_E-siliculosus-1a_F_contig1364.2174.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1867bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1364:17373..19239+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCCTGCCGTAAGCGACGGCCCCCTCACCGGCGGTGGCGGCGGCGGTGG
CGGCGGCGGTAAGGAGAGGGGGAGCGTCAGTCTCCGTATCCGTCGTCGGA
GACTTAGTTTCGACGGCGCTGTGGATCGCGTCCCACGGTGGTGGGAGGCC
GCCGGGGCGGAGGAGGAGCGAGGCGGCGCAATCGGAGCCGCCGTTTCCGG
TGTTACTGCTGCTGCTGCTCAACAGCGTAAGCGGGCGAACACGTGGTGCT
CGTCGTCAGGCTCGACCGGGAGCGCGACAGCAGTATCGACGTCTTTGCTG
GTGCGGGCGGAAGAGGAGGAAGAAGAAGAAGAAGAAGAAATGCATTGCAG
AGCTGACGAAAGGAATAACACGGAAGAAGCGGCAGCGACCTTTGTGACGG
CGGCGATAGAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGAAGGAGAA
GAAGCAACGTCAACGACCGCATCAGTAGGAGGAGGAGGAGGAGCAGCAGC
AGGAGAAGGAACGACGTCCATCCCTACGGTCGCCAGCACTGCCAAGGAAA
GCGACTCGGGGGCAGCAGCAGCAGCAGTTGCGGTACCCACAAGGACGACG
ACACCCGCGACCATCGTCTCCGGAGAGGCGGCAAGCAGCGAAGCAGCAGC
AGCGGCAGAAGAAGCCGTCGCGGCAAGCAGCGAGGCCCTCCCCCAAGGGA
GCGGCGGCGACCCGTGGGCGAGCAGCAAGAGGCAGCTGCCACTTCCTCTC
CAGCCTCTCGCCGGAAGGTGCAACTTCAGGGGCTGTGGCCGGGTATGTAT
GTAGAATATACCGGCGGGTGCTGCTGTGTTTATGGGATATGTCAGCGAGA
GTCGATGTGACGCTCGCCGCCGCTGTTTCGGCCTATCGGCGTCCGGGCGT
ATACCGTATGACATCCGTTGGCAGCAGCGTGATTTTTTTGTCTTTTTTTC
AGTCTTCGCCCTTGAAATTTCTGGACCAAAGTGTTCAATGTACGATATGG
AAACCCCCGCGGGACCTGCGCGCACCCGATGTACGCGCGAGATAGCCTCA
GCGTTTCCGTCGTTTTTCGTACGGCGCCCCAGCTTCGATACTGCGATATG
GACGCTCCGCAGCTGCGGTGAGAGATAAACCCGTAGGCTGCCCGTCACCT
TCACCGAGGAGGGGGGCAACGTGGTTGGTGGTGCCAGTATGCGTACCCCC
CTTCCTCACAATACCTCTTGCGTTTACTCCCTCCGTCCAGATATCGGTGT
TCCGGTGCGGGCGGTGCCGAGCGGCGTTCTACTGCAACCGAGACCACCAG
CGGAGCGACTGGGCGTGGCACCGGCGGGTCTGTGACGAGGGAAAGGGCGA
GCCCCCCCCCCCGCTCGCGCGGCTGGTCCTCCCGGCGCAGAGGCAGAAGG
CTGTTGGCTGGGCCGACTCCACCCGGGTGGTACCGGCGTCGGCGGCGGAC
GCGGGGGGGGGGGGTTGCTCCCCTCCCGCCTGGGAAGGAGGCGGCGCCGG
CGGCAGCGGTGCGAAAGGCAGTGGTCGTGTCGGAGGCGTTAGGCACGGGG
GCGGCGGTGGTTTTGGTTCGGGCGCGAACAGCGCGGCGTTTCGGGAGAAC
CGGTCCCGCTTGGAGGCCGCGATGGCGTCGGCGGCTCACTCACCAGCAGC
GGCGATCGACGGCGGCGGCGGCGGCGGCGGTTTCGACCCCACCCACGTGC
GTACGTCTCGCGGGGGGGCCTCGTGGACTGTGCCCGCGTCCAACGACAAC
GGCGGCGGGGCCGGAAGCGCGGCGGTTTGGCCGGCTTCTTCTTCTTCATC
CGGCGGCGCCGGGATATGGCAGAGGGGCCGGCTAGCCTCGCGGCTCCCCC
CGTCGGGCTGCCCGCCC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1364:17373..19239+

>mRNA_E-siliculosus-1a_F_contig1364.2174.1 ID=mRNA_E-siliculosus-1a_F_contig1364.2174.1|Name=mRNA_E-siliculosus-1a_F_contig1364.2174.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2838bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1364:17373..19239+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCCTGCCGTAAGCGACGGCCCCCTCACCGGCGGTGGCGGCGGCGGTGG
CGGCGGCGGTAAGGAGAGGGGGAGCGTCAGTCTCCGTATCCGTCGTCGGA
GACTTAGTTTCGACGGCGCTGTGGATCGCGTCCCACGGTGGTGGGAGGCC
GCCGGGGCGGAGGAGGAGCGAGGCGGCGCAATCGGAGCCGCCGTTTCCGG
TGTTACTGCTGCTGCTGCTCAACAGCGTAAGCGGGCGAACACGTGGTGCT
CGTCGTCAGGCTCGACCGGGAGCGCGACAGCAGTATCGACGTCTTTGCTG
GTGCGGGCGGAAGAGGAGGAAGAAGAAGAAGAAGAAGAAATGCATTGCAG
AGCTGACGAAAGGAATAACACGGAAGAAGCGGCAGCGACCTTTGTGACGG
CGGCGATAGAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGAAGGAGAA
GAAGCAACGTCAACGACCGCATCAGTAGGAGGAGGAGGAGGAGCAGCAGC
AGGAGAAGGAACGACGTCCATCCCTACGGTCGCCAGCACTGCCAAGGAAA
GCGACTCGGGGGCAGCAGCAGCAGCAGTTGCGGTACCCACAAGGACGACG
ACACCCGCGACCATCGTCTCCGGAGAGGCGGCAAGCAGCGAAGCAGCAGC
AGCGGCAGAAGAAGCCGTCGCGGCAAGCAGCGAGGCCCTCCCCCAAGGGA
GCGGCGGCGACCCGTGGGCGAGCAGCAAGAGGCAGCTGCCACTTCCTCTC
CAGCCTCTCGCCGGAAGGTGCAACTTCAGGGGCTGTGGCCGGATGCCTGC
CGTAAGCGACGGCCCCCTCACCGGCGGTGGCGGCGGCGGTGGCGGCGGCG
GTAAGGAGAGGGGGAGCGTCAGTCTCCGTATCCGTCGTCGGAGACTTAGT
TTCGACGGCGCTGTGGATCGCGTCCCACGGTGGTGGGAGGCCGCCGGGGC
GGAGGAGGAGCGAGGCGGCGCAATCGGAGCCGCCGTTTCCGGTGTTACTG
CTGCTGCTGCTCAACAGCGTAAGCGGGCGAACACGTGGTGCTCGTCGTCA
GGCTCGACCGGGAGCGCGACAGCAGTATCGACGTCTTTGCTGGTGCGGGC
GGAAGAGGAGGAAGAAGAAGAAGAAGAAGAAATGCATTGCAGAGCTGACG
AAAGGAATAACACGGAAGAAGCGGCAGCGACCTTTGTGACGGCGGCGATA
GAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGAAGGAGAAGAAGCAAC
GTCAACGACCGCATCAGTAGGAGGAGGAGGAGGAGCAGCAGCAGGAGAAG
GAACGACGTCCATCCCTACGGTCGCCAGCACTGCCAAGGAAAGCGACTCG
GGGGCAGCAGCAGCAGCAGTTGCGGTACCCACAAGGACGACGACACCCGC
GACCATCGTCTCCGGAGAGGCGGCAAGCAGCGAAGCAGCAGCAGCGGCAG
AAGAAGCCGTCGCGGCAAGCAGCGAGGCCCTCCCCCAAGGGAGCGGCGGC
GACCCGTGGGCGAGCAGCAAGAGGCAGCTGCCACTTCCTCTCCAGCCTCT
CGCCGGAAGGTGCAACTTCAGGGGCTGTGGCCGGATATCGGTGTTCCGGT
GCGGGCGGTGCCGAGCGGCGTTCTACTGCAACCGAGACCACCAGCGGAGC
GACTGGGCGTGGCACCGGCGGGTCTGTGACGAGGGAAAGGGCGAGCCCCC
CCCCCCGCTCGCGCGGCTGGTCCTCCCGGCGCAGAGGCAGAAGGCTGTTG
GCTGGGCCGACTCCACCCGGGTGGTACCGGCGTCGGCGGCGGACGCGGGG
GGGGGGGGTTGCTCCCCTCCCGCCTGGGAAGGAGGCGGCGCCGGCGGCAG
CGGTGCGAAAGGCAGTGGTCGTGTCGGAGGCGTTAGGCACGGGGGCGGCG
GTGGTTTTGGTTCGGGCGCGAACAGCGCGGCGTTTCGGGAGAACCGGTCC
CGCTTGGAGGCCGCGATGGCGTCGGCGGCTCACTCACCAGCAGCGGCGAT
CGACGGCGGCGGCGGCGGCGGCGGTTTCGACCCCACCCACGTGCGTACGT
CTCGCGGGGGGGCCTCGTGGACTGTGCCCGCGTCCAACGACAACGGCGGC
GGGGCCGGAAGCGCGGCGGTTTGGCCGGCTTCTTCTTCTTCATCCGGCGG
CGCCGGGATATGGCAGAGGGGCCGGCTAGCCTCGCGGCTCCCCCCGTCGG
GCTGCCCGCCCATATCGGTGTTCCGGTGCGGGCGGTGCCGAGCGGCGTTC
TACTGCAACCGAGACCACCAGCGGAGCGACTGGGCGTGGCACCGGCGGGT
CTGTGACGAGGGAAAGGGCGAGCCCCCCCCCCCGCTCGCGCGGCTGGTCC
TCCCGGCGCAGAGGCAGAAGGCTGTTGGCTGGGCCGACTCCACCCGGGTG
GTACCGGCGTCGGCGGCGGACGCGGGGGGGGGGGGTTGCTCCCCTCCCGC
CTGGGAAGGAGGCGGCGCCGGCGGCAGCGGTGCGAAAGGCAGTGGTCGTG
TCGGAGGCGTTAGGCACGGGGGCGGCGGTGGTTTTGGTTCGGGCGCGAAC
AGCGCGGCGTTTCGGGAGAACCGGTCCCGCTTGGAGGCCGCGATGGCGTC
GGCGGCTCACTCACCAGCAGCGGCGATCGACGGCGGCGGCGGCGGCGGCG
GTTTCGACCCCACCCACGTGCGTACGTCTCGCGGGGGGGCCTCGTGGACT
GTGCCCGCGTCCAACGACAACGGCGGCGGGGCCGGAAGCGCGGCGGTTTG
GCCGGCTTCTTCTTCTTCATCCGGCGGCGCCGGGATATGGCAGAGGGGCC
GGCTAGCCTCGCGGCTCCCCCCGTCGGGCTGCCCGCCC
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