prot_E-siliculosus-1a_F_contig1353.2110.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig1353.2110.1
Unique Nameprot_E-siliculosus-1a_F_contig1353.2110.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length272
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1353.2110.1 vs. uniprot
Match: D8LKA3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKA3_ECTSI)

HSP 1 Score: 330 bits (846), Expect = 4.020e-111
Identity = 257/273 (94.14%), Postives = 258/273 (94.51%), Query Frame = 0 
Query:    1 MGEFGSNRAAWLIAGFLGRKFMKDFLGRWSVIPVLAVAACLWNKWRARQLEGKLEQCKLEEVRRSTRRQLQLLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGDRLGGIPSASISTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-AAPKDALASELWAWLGGVGSGRRSCSTDRPKCSSSQRSGGXXXXXG-SGEWRGAFYNRMGNLPRRNAFKTARGKVYLRGGRIGSGGTRGGAQAPPLGSLASVREEDEGVAVVAT 271
            MGEFGSNRAAWLIAGFLGRKFMKDFLGRWSVIPVLAVAACLWNKWRARQLEGKLEQCKLEEVRRSTRRQLQLLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      PGDRLGGIPSASISTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AAPKDALASELWAWLGGVGSGRRSCS DRPKCSSS RSG XXXXX  SGEWRGAFYNRMGNLPRRNAFKTARGKVYLRGGRIGSGGTR G QAPPLG LASVREEDEGVAVV+T
Sbjct:    1 MGEFGSNRAAWLIAGFLGRKFMKDFLGRWSVIPVLAVAACLWNKWRARQLEGKLEQCKLEEVRRSTRRQLQLLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------PGDRLGGIPSASISTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAPKDALASELWAWLGGVGSGRRSCSADRPKCSSSPRSGXXXXXXXXSGEWRGAFYNRMGNLPRRNAFKTARGKVYLRGGRIGSGGTREGVQAPPLGGLASVREEDEGVAVVST 267
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1353.2110.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKA3_ECTSI4.020e-11194.14Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 44..271
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..24
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 25..43

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1353contigE-siliculosus-1a_F_contig1353:22955..26456 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1353.2110.1mRNA_E-siliculosus-1a_F_contig1353.2110.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig1353 22919..26731 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig1353.2110.1 ID=prot_E-siliculosus-1a_F_contig1353.2110.1|Name=mRNA_E-siliculosus-1a_F_contig1353.2110.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=272bp
MGEFGSNRAAWLIAGFLGRKFMKDFLGRWSVIPVLAVAACLWNKWRARQL
EGKLEQCKLEEVRRSTRRQLQLLRKKSAAGALPPRAAAGCTSVLRQRQQQ
QQQQQQQQRRPGDRLGGIPSASISTTPKQQEAQRQHLSPTAAAAAAAAAA
GGGATAASAAPKDALASELWAWLGGVGSGRRSCSTDRPKCSSSQRSGGGG
GSGGSGEWRGAFYNRMGNLPRRNAFKTARGKVYLRGGRIGSGGTRGGAQA
PPLGSLASVREEDEGVAVVAT*
back to top