|
|
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1353.2110.1 vs. uniprot
Match: D8LKA3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKA3_ECTSI) HSP 1 Score: 331 bits (849), Expect = 6.100e-110 Identity = 257/273 (94.14%), Postives = 258/273 (94.51%), Query Frame = 1
Query: 37 MGEFGSNRAAWLIAGFLGRKFMKDFLGRWSVIPVLAVAACLWNKWRARQLEGKLEQCKLEEVRRSTRRQLQLLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGDRLGGIPSASISTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-AAPKDALASELWAWLGGVGSGRRSCSTDRPKCSSSQRSGGXXXXXG-SGEWRGAFYNRMGNLPRRNAFKTARGKVYLRGGRIGSGGTRGGAQAPPLGSLASVREEDEGVAVVAT 849
MGEFGSNRAAWLIAGFLGRKFMKDFLGRWSVIPVLAVAACLWNKWRARQLEGKLEQCKLEEVRRSTRRQLQLLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX PGDRLGGIPSASISTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AAPKDALASELWAWLGGVGSGRRSCS DRPKCSSS RSG XXXXX SGEWRGAFYNRMGNLPRRNAFKTARGKVYLRGGRIGSGGTR G QAPPLG LASVREEDEGVAVV+T
Sbjct: 1 MGEFGSNRAAWLIAGFLGRKFMKDFLGRWSVIPVLAVAACLWNKWRARQLEGKLEQCKLEEVRRSTRRQLQLLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------PGDRLGGIPSASISTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAPKDALASELWAWLGGVGSGRRSCSADRPKCSSSPRSGXXXXXXXXSGEWRGAFYNRMGNLPRRNAFKTARGKVYLRGGRIGSGGTREGVQAPPLGGLASVREEDEGVAVVST 267
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 816 |
| Model size | 1127 |
| Exons | 4 |
| Ec32 ortholog | Ec-01_009520.1 |
| Ec32 ortholog description | hypothetical protein |
| Hectar predicted targeting category | other localisation |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1353.2110.1 >prot_E-siliculosus-1a_F_contig1353.2110.1 ID=prot_E-siliculosus-1a_F_contig1353.2110.1|Name=mRNA_E-siliculosus-1a_F_contig1353.2110.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=272bp
MGEFGSNRAAWLIAGFLGRKFMKDFLGRWSVIPVLAVAACLWNKWRARQL
EGKLEQCKLEEVRRSTRRQLQLLRKKSAAGALPPRAAAGCTSVLRQRQQQ
QQQQQQQQRRPGDRLGGIPSASISTTPKQQEAQRQHLSPTAAAAAAAAAA
GGGATAASAAPKDALASELWAWLGGVGSGRRSCSTDRPKCSSSQRSGGGG
GSGGSGEWRGAFYNRMGNLPRRNAFKTARGKVYLRGGRIGSGGTRGGAQA
PPLGSLASVREEDEGVAVVAT* back to topmRNA from alignment at E-siliculosus-1a_F_contig1353:22919..26731+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1353.2110.1 ID=mRNA_E-siliculosus-1a_F_contig1353.2110.1|Name=mRNA_E-siliculosus-1a_F_contig1353.2110.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3813bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1353:22919..26731+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CACTGACCCAACGCACGAACGCTGAAAAGGAAGAGGATGGGCGAATTCGG
GTCTAACCGAGCAGCATGGCTGATAGCTGGCTTCCTAGGGCGCAAGTTCA
TGAAGGTGGGTGTCTGCTGCTCTCTCACACGCACCTCCGTGTTCTACGCT
GTCAATCGCTTTGGCGAAGTTTCCGGGCGGGCGCGAGAATTGAGCGCGCG
CGCCAGTTATGTGTTCATCTGGGTGTGTGCGTTGCCAGAGAAAAGGAAGC
TAGCTTGCTTCTACAACGCTGCTGGTGTGTGCGTGAATCTACTCGGCAGG
AGGCTGGGTAGCTCTACCAGCCCTCTGGCCGCTTTGCCTTCCTTCGGACA
CATGCCAGTGTTTCGATTCGCTGCTGCTGCTGCTGCTGCTGTGTGCAACG
TGGAGGAAAACGTGGCGTTCCTCTGTGCTCTCGTCGTTGTTGCACCTCCA
GGATTTCCTGGGACGATGGAGCGTCATCCCGGTGTTGGCCGTAGCCGCCT
GCTTGTGGAACAAGTGGAGAGCGAGGCAGCTCGAAGGAAAGCTTGAGCAG
TGCAAGCTAGAGGAGGTGAGCCCTGCCAGACAGCCGTGGAGGCAGGCCTA
CAGCAGTAGGCGGCCGGATGTTCCGGCCCATGTCCGTCTCGTTGTATGTA
CACACCCAAGCACATATTTTTCCCAGCCACAGTGTTCCTGCGTATACAGA
CGAGGTTTGTACACCTCACCTGCTGGTCCTCCCCCTTGGTCTGATCGGCA
GTACAGCAGTATCATGGTTCATGGGGGATAATGGTTCCATTTTTGAGGGC
TCAGTTCGCGTCTCCTCCTTGTACCCGAGGCCTCCGATTCTGTTTTCGGC
TCTACAAACGGAGGCCTTGTGGCGACCAACGCCAGAGGCGACGTGTGAAT
TTGTGAATCATCATCCACCCAGGATTCTCTCTCGGTCTATCCCTCCTCCT
CCCCTCCTCCCCTCCTCCCTCGTTGCTACTGCTGTAATATAGTCTATGGT
CCGTCCGGGGAAATGTTTCCATAACGTGTTTCGGGCGATAACGTTCGAAA
GAAATCGAGCTAGATAGAAGTTGAGCCACGCTAATGATCCCCACATCAAG
GCGAGCAAAAAAGTTTTCGAGGAAATTTTTTGACACCCCCCTCTAAGTTC
AAGTAATTGTTGAGCACGAAAACTTGAAGACTGGGGGAAAAACTTGAGTT
TTGGACATAATGCGGAATATCTCGCGAACCAGATTTTTATTTGAAAATCG
GAAAAGTTTTAGGTCTGGGGAATTACGAGAGGAATCGATTGCCGTGGTCT
ATTTCAAGCTCCGTGGTTGTATATTAGAGTAATATTTTAAAGCGACTGGT
ATCCAAAATCCAGTTTTTCGCCGATAACTTGTTGTATTTTTACTCAAATC
AAAATCGGAAAAATTTTAGGTCTGGGGAATTCCGAGAGCTGTCCAAATCC
GGTCTCGGAATTGTGCTCTGAGAAAAAGACACCCCAGGAGAATTTTAACG
ACATTTTCCGGTTATGTGCAAATACAAGACGAACGAGAACAAAAAAAAAG
AAACGATTTCCACAGGGACACGCGCCTGGAGACAGGGCGTTTGCCGGCAC
TTTCGGTTTTCGGAACAACCCCCCCAGCCCCGAGAAAAATTGACATAAGT
GCAGGTCGGAATTATGGAAAGTTGTCCCCCGACGGACCATAGTTTTTTCC
TCTTGCACCCCACCACCACCGTAGGAGAACGACAAAGTCGCGGTGCTCTT
TGCCTTGTTACCCCAAACGATGACATTATCAGACACCCCCCGGCGTTTAA
AGGCACATGGCGTGGCTTTTGCTTGCAACCGCAGCAGCAGCACCCATCAT
GCATACTCTTTCGTCACGATGTATGCATATGAGCGTGTATCCGTAGCAGT
ATGAGCAACATTTGAAAATCGAGTGGGATGCCTTCCTCTTTCTACCCCAC
TGCTGGAAATGAAACTCGCGACGCGATTTTTTGCGGTTATTTGACGCCCG
TATGTACAACGGCATGTTTGTACTTATACGCGCATGGTCGGCCCCGTGCA
AGTAGTCTTCAGACACTGCAACTTCGTTGATATCCGAGATATTGGAACAC
CCAACCTCGAATGACCTCTGGACGCCGCATGTAAATAGGACATTCCACAG
CAGCAGACACGCGGAGATAGATACATGCGACACACGACTGGCTAGCATCG
TCATATCATGAGCATCCGTGGCCTGCCTGCACCCGGCGTTCTTCTTTCCC
CGCTGCTGCTGCTGCTGCTGCTGTGTCTCACACGCCATGCTGATTGGAAT
ACCCTTTCTGCTTGGACACAGCAGTATGCAGCAGCCGTTCAGTCTGCGAC
GGACGTTGGTGGCACTGCTGTATGCATGGTAATTGTACAATACCTCTATT
CAGTCGGTTGTCTCCTGTCTCCTGAACGGCTGCAATCTCTCGTCCGTGGG
GCTTTTACTAAATACTTTTTTCTCGGCAGGTCCGCCGGAGCACACGGCGA
CAGCTGCAGCTCCTCCGGAAGAAATCGGCGGCAGGGGCGTTGCCCCCTCG
AGCAGCAGCAGGCTGCACCTCCGTATTGCGCCAGCGACAACAACAACAAC
AACAACAACAACAACAACAGCGGAGACCGGGCGACCGTCTCGGTGGCATC
CCCAGCGCCTCGATCTCCACGACTCCGAAGCAGCAGGAAGCGCAACGGCA
ACACCTGTCCCCGACCGCCGCCGCCGCTGCCGCCGCTGCCGCTGCCGGCG
GCGGCGCCACGGCAGCATCAGCAGCCCCAAAAGATGCGCTGGCGTCGGAG
CTGTGGGCATGGCTAGGAGGGGTCGGGTCTGGGCGGCGGTCGTGCAGCAC
AGACCGGCCTAAGTGCTCGTCGTCTCAACGTTCCGGCGGCGGAGGCGGCA
GCGGCGGCAGCGGCGAGTGGAGGGGCGCATTTTACAACCGTGAGATCCTG
TTTTTTTTGTTTTTTTGTGGGCTGTGACTGCTGTATGATATTGTGCGTCT
TTAGTCGGTTGCCGAATGTTTGGTTCGTTCTGCGTAGAGCTTGGCGCCGC
AGTAACTTGGGGGTGGAAAGCGACCGTCGCGTTTTTTTTTTCCGAAGCTC
TTTTGCGCCCCTCCACCTCGCTGCCCCCCGCGCGAGGCTCCCCTACTAAT
TGTCCGCCCTTCGCTTTGCTCTTGGTTGAACCAACGACGCAAATCAGGGC
GCACGTAACAACGTTGCTAAACACGCACCGAAAAGTAGTAGTATATACAA
CGATCGATCCCATTTCCTCGATTCCCCCCTCTGCTACATACGCATAGCTC
ACGTAACCCCCCCGCCCCCATGCCTTTTTTTTTCTCGCGTATGTACATAT
GTCGCTGGAACGCAGGCATGGGCAACCTCCCGCGACGAAACGCTTTCAAG
ACGGCCCGAGGCAAGGTTTACTTGAGAGGCGGCCGTATCGGATCGGGGGG
GACACGCGGAGGGGCACAAGCCCCACCCCTGGGGAGTCTCGCGTCGGTGC
GCGAAGAGGATGAGGGGGTAGCCGTCGTCGCCACTTGATTGCGGGGGTGT
GGCTGAGCAGAGCGCAAAGGGTCGCACGCGCGCGTTGCGTTTATAGCGAG
CAGAAGGAGCTTTAGAAAATGGGGGGAGATGATTATACTAGTAGAAGAGT
GGTGAATATACGATACGTCTGTTTTGCGTGTAGTACTTGTAGTCTTTGTA
TCTCCTGTGTGTGTTGTTTGCCTCGGCTGGTTGGAGAACGCGCGGGGGGG
GGGGTGACCACCTTTGGTGGGACGTCTTACTACTCCCTTCAAGGTCCGGC
TTTCTTGGAACTT back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1353:22919..26731+ >mRNA_E-siliculosus-1a_F_contig1353.2110.1 ID=mRNA_E-siliculosus-1a_F_contig1353.2110.1|Name=mRNA_E-siliculosus-1a_F_contig1353.2110.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1632bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1353:22919..26731+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGGCGAATTCGGGTCTAACCGAGCAGCATGGCTGATAGCTGGCTTCCT
AGGGCGCAAGTTCATGAAGATGGGCGAATTCGGGTCTAACCGAGCAGCAT
GGCTGATAGCTGGCTTCCTAGGGCGCAAGTTCATGAAGGATTTCCTGGGA
CGATGGAGCGTCATCCCGGTGTTGGCCGTAGCCGCCTGCTTGTGGAACAA
GTGGAGAGCGAGGCAGCTCGAAGGAAAGCTTGAGCAGTGCAAGCTAGAGG
AGGATTTCCTGGGACGATGGAGCGTCATCCCGGTGTTGGCCGTAGCCGCC
TGCTTGTGGAACAAGTGGAGAGCGAGGCAGCTCGAAGGAAAGCTTGAGCA
GTGCAAGCTAGAGGAGGTCCGCCGGAGCACACGGCGACAGCTGCAGCTCC
TCCGGAAGAAATCGGCGGCAGGGGCGTTGCCCCCTCGAGCAGCAGCAGGC
TGCACCTCCGTATTGCGCCAGCGACAACAACAACAACAACAACAACAACA
ACAACAGCGGAGACCGGGCGACCGTCTCGGTGGCATCCCCAGCGCCTCGA
TCTCCACGACTCCGAAGCAGCAGGAAGCGCAACGGCAACACCTGTCCCCG
ACCGCCGCCGCCGCTGCCGCCGCTGCCGCTGCCGGCGGCGGCGCCACGGC
AGCATCAGCAGCCCCAAAAGATGCGCTGGCGTCGGAGCTGTGGGCATGGC
TAGGAGGGGTCGGGTCTGGGCGGCGGTCGTGCAGCACAGACCGGCCTAAG
TGCTCGTCGTCTCAACGTTCCGGCGGCGGAGGCGGCAGCGGCGGCAGCGG
CGAGTGGAGGGGCGCATTTTACAACCGTCCGCCGGAGCACACGGCGACAG
CTGCAGCTCCTCCGGAAGAAATCGGCGGCAGGGGCGTTGCCCCCTCGAGC
AGCAGCAGGCTGCACCTCCGTATTGCGCCAGCGACAACAACAACAACAAC
AACAACAACAACAACAGCGGAGACCGGGCGACCGTCTCGGTGGCATCCCC
AGCGCCTCGATCTCCACGACTCCGAAGCAGCAGGAAGCGCAACGGCAACA
CCTGTCCCCGACCGCCGCCGCCGCTGCCGCCGCTGCCGCTGCCGGCGGCG
GCGCCACGGCAGCATCAGCAGCCCCAAAAGATGCGCTGGCGTCGGAGCTG
TGGGCATGGCTAGGAGGGGTCGGGTCTGGGCGGCGGTCGTGCAGCACAGA
CCGGCCTAAGTGCTCGTCGTCTCAACGTTCCGGCGGCGGAGGCGGCAGCG
GCGGCAGCGGCGAGTGGAGGGGCGCATTTTACAACCGCATGGGCAACCTC
CCGCGACGAAACGCTTTCAAGACGGCCCGAGGCAAGGTTTACTTGAGAGG
CGGCCGTATCGGATCGGGGGGGACACGCGGAGGGGCACAAGCCCCACCCC
TGGGGAGTCTCGCGTCGGTGCGCGAAGAGGATGAGGGGGTAGCCGTCGTC
GCCACTTGAGCATGGGCAACCTCCCGCGACGAAACGCTTTCAAGACGGCC
CGAGGCAAGGTTTACTTGAGAGGCGGCCGTATCGGATCGGGGGGGACACG
CGGAGGGGCACAAGCCCCACCCCTGGGGAGTCTCGCGTCGGTGCGCGAAG
AGGATGAGGGGGTAGCCGTCGTCGCCACTTGA back to top
|