prot_E-siliculosus-1a_F_contig1337.2037.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig1337.2037.1
Unique Nameprot_E-siliculosus-1a_F_contig1337.2037.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length154
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1337.2037.1 vs. uniprot
Match: D8LM34_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM34_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 1.910e-25
Identity = 57/58 (98.28%), Postives = 57/58 (98.28%), Query Frame = 0 
Query:    1 ARLGRDRLRDQSSLVRKEAVKLLSTLLEYNPYNSTLDLKINQARWKQAEAELRAMSPA 58
            ARLGRDRLRDQSSLVRKEAVKLLSTLLEYNPYNSTLDLKINQARWKQAE ELRAMSPA
Sbjct:  491 ARLGRDRLRDQSSLVRKEAVKLLSTLLEYNPYNSTLDLKINQARWKQAETELRAMSPA 548
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1337.2037.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LM34_ECTSI1.910e-2598.28Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR026971Condensin subunit 1/Condensin-2 complex subunit D3PANTHERPTHR14222CONDENSINcoord: 6..128
IPR007673Condensin subunit 1PANTHERPTHR14222:SF2CONDENSIN COMPLEX SUBUNIT 1coord: 6..128

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1337contigE-siliculosus-1a_F_contig1337:31764..33248 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1337.2037.1mRNA_E-siliculosus-1a_F_contig1337.2037.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig1337 31764..33248 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig1337.2037.1 ID=prot_E-siliculosus-1a_F_contig1337.2037.1|Name=mRNA_E-siliculosus-1a_F_contig1337.2037.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=154bp
ARLGRDRLRDQSSLVRKEAVKLLSTLLEYNPYNSTLDLKINQARWKQAEA
ELRAMSPAQSEGEGAEGEGEGDKQPEADRAGFDGDGESDAGSDEEGDNDL
EEEEEEGKVGSENEDEAGGEGEEQEEGSEEEKKEEEAEDGVDGSDGREQD
GGEE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007673Condensin_cplx_su1
IPR026971CND1/NCAPD3