mRNA_E-siliculosus-1a_F_contig1337.2037.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1337.2037.1
Unique NamemRNA_E-siliculosus-1a_F_contig1337.2037.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1337.2037.1 vs. uniprot
Match: D8LM34_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM34_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 1.910e-25
Identity = 57/58 (98.28%), Postives = 57/58 (98.28%), Query Frame = 1 
Query:    1 ARLGRDRLRDQSSLVRKEAVKLLSTLLEYNPYNSTLDLKINQARWKQAEAELRAMSPA 174
            ARLGRDRLRDQSSLVRKEAVKLLSTLLEYNPYNSTLDLKINQARWKQAE ELRAMSPA
Sbjct:  491 ARLGRDRLRDQSSLVRKEAVKLLSTLLEYNPYNSTLDLKINQARWKQAETELRAMSPA 548
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1337.2037.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LM34_ECTSI1.910e-2598.28Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1337contigE-siliculosus-1a_F_contig1337:31764..33248 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size462
Model size463
Exons3
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko03036
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.D
EggNOG OGsCOG5098@1,KOG0414@2759
EggNOG free text desc.mitotic chromosome condensation
GOsGO:0000003,GO:0000070,GO:0000228,GO:0000278,GO:0000280,GO:0000775,GO:0000776,GO:0000777,GO:0000778,GO:0000779,GO:0000780,GO:0000785,GO:0000793,GO:0000794,GO:0000796,GO:0000797,GO:0000799,GO:0000819,GO:0003674,GO:0003682,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006323,GO:0006325,GO:0006342,GO:0006355,GO:0006725,GO:0006807,GO:0006996,GO:0007049,GO:0007059,GO:0007076,GO:0007127,GO:0007129,GO:0007130,GO:0008150,GO:0008152,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010032,GO:0010468,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0010629,GO:0010948,GO:0016043,GO:0016458,GO:0019219,GO:0019222,GO:0022402,GO:0022414,GO:0022607,GO:0030261,GO:0030466,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0035327,GO:0040029,GO:0042393,GO:0043007,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043570,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0045120,GO:0045132,GO:0045143,GO:0045786,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0048285,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0051304,GO:0051307,GO:0051321,GO:0051445,GO:0051447,GO:0051726,GO:0060255,GO:0061982,GO:0065007,GO:0070013,GO:0070058,GO:0070192,GO:0070193,GO:0071103,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0098687,GO:0098813,GO:0140013,GO:0140014,GO:1901360,GO:1902679,GO:1903046,GO:1903047,GO:1903341,GO:1903342,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2000241,GO:2000242,GO:2001141
KEGG Pathwayko04111,map04111
KEGG koko:K06677
Preferred nameNCAPD2
Seed eggNOG ortholog2880.D8LM34
Seed ortholog evalue2.4e-22
Seed ortholog score112.1
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1337.2037.1prot_E-siliculosus-1a_F_contig1337.2037.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1337 31764..33248 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927855.9900723-CDS-E-siliculosus-1a_F_contig1337:31763..318261622927855.9900723-CDS-E-siliculosus-1a_F_contig1337:31763..31826Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1337 31764..31826 +
1696318710.14465-CDS-E-siliculosus-1a_F_contig1337:31763..318261696318710.14465-CDS-E-siliculosus-1a_F_contig1337:31763..31826Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1337 31764..31826 +
1622927856.0066307-CDS-E-siliculosus-1a_F_contig1337:32316..325031622927856.0066307-CDS-E-siliculosus-1a_F_contig1337:32316..32503Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1337 32317..32503 +
1696318710.1573448-CDS-E-siliculosus-1a_F_contig1337:32316..325031696318710.1573448-CDS-E-siliculosus-1a_F_contig1337:32316..32503Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1337 32317..32503 +
1622927856.0194583-CDS-E-siliculosus-1a_F_contig1337:33036..332481622927856.0194583-CDS-E-siliculosus-1a_F_contig1337:33036..33248Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1337 33037..33248 +
1696318710.165955-CDS-E-siliculosus-1a_F_contig1337:33036..332481696318710.165955-CDS-E-siliculosus-1a_F_contig1337:33036..33248Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1337 33037..33248 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1337.2037.1

>prot_E-siliculosus-1a_F_contig1337.2037.1 ID=prot_E-siliculosus-1a_F_contig1337.2037.1|Name=mRNA_E-siliculosus-1a_F_contig1337.2037.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=154bp
ARLGRDRLRDQSSLVRKEAVKLLSTLLEYNPYNSTLDLKINQARWKQAEA
ELRAMSPAQSEGEGAEGEGEGDKQPEADRAGFDGDGESDAGSDEEGDNDL
EEEEEEGKVGSENEDEAGGEGEEQEEGSEEEKKEEEAEDGVDGSDGREQD
GGEE
back to top

mRNA from alignment at E-siliculosus-1a_F_contig1337:31764..33248+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1337.2037.1 ID=mRNA_E-siliculosus-1a_F_contig1337.2037.1|Name=mRNA_E-siliculosus-1a_F_contig1337.2037.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1485bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1337:31764..33248+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCTCGTCTCGGGAGGGATCGCCTGCGCGACCAGAGCTCGTTGGTCCGAAA
GGAGGCGGTCAAGGTACAGTACTGCTGTAAGCGGGGGCAGGGAATGGATG
GGCCGTGGGTTTCACCACGGTCGTCTTCCTGATTACAAACAGGCGTGTGT
GTTTTGAGCTACAGCCGTCTTTGTGAGCGTTTGGCCCGTCGGAAGGTTGT
AGAGTGTTTTTCGCTCCGCCGGAGCTACGTCTTGTGTTCGTCTCCGGCTG
AGTGTTTCGAGATGGGCGCCGGGAGGGTTCTCTGCTCCCGACCGTCTGGT
TACATTCTATTGTGCAACATCGAAGCGCTGTGCGCTTGTTTCCGATTGTT
TCGATGACAGCCGTTGGAACAAAGCCGGGTTGTTTGGAACTCCCGGCGTC
CACGGGCACAACCGTGGTGATCGCGGGTTTTCGATGTCGCCCTGCTAATC
GTCCATGCTTGCGACCGCTCGATCGATCTCACGCCTGCGTTGTTGCCACC
CGATGCATTGCCGCTACCGCCGCTGCTTTTGTCCGTCCCGCACCCCCACG
CAGCTCCTGTCGACGCTCCTTGAGTACAACCCCTACAACAGCACCCTGGA
CCTCAAGATCAACCAGGCCAGGTGGAAGCAAGCGGAGGCCGAACTCCGCG
CCATGAGTCCCGCCCAGAGCGAGGGCGAGGGCGCCGAGGGCGAGGGCGAG
GGTGACAAGCAGCCTGAGGCCGACCGAGCGGGGTTCGACGGTGAGAGCGG
TTTCGTTCCGGGGGTAGGATTTCACGAAGGGAGCAAGGAAGATAACAAAT
TATCGGCGCGGGCACAGCGGGGGGGGGGGGGGGGTCTGGAGACGACGTGT
AGTACGTGCGACAACTGTATGGACTGTGGAGCGCGTGCGACAGCAGTACG
TGATTGGCAATGACGGTACGCCGCGGTAAGGGTCGACGGTTCATCATTTC
AAGGGTACTGCCATGAATCCTTCCGTTATAGGTCGATCAAGCTCTCTCTC
TCAAGAGCAGCTTGTCGCCGACTTGGTTGTGTGCTTCTCGAACCCCGCTC
CCCGCGTGGGTGCGCACACGATCCCACACCAAACGAAAAACACCCGTAAA
TCTCAGGTTAAGTTACATAGTCTTGGGGGTCTTGTAATAGACTTCGTTCA
TGCCCCCCAAATCCACCACTGTCCCAATTTTTCTGCCCCCCCCCCCCTCC
CACTACTCCGTCCTCTAAGGAATGCAAAACACGAGTATGCCCCCACCCCC
TCCACCGCCGATACCGAATCAAGGTGATGGTGAGAGCGACGCCGGGAGCG
ATGAGGAGGGCGATAACGACCTCGAGGAGGAGGAAGAGGAGGGTAAGGTG
GGTTCGGAGAACGAGGACGAAGCCGGGGGTGAAGGCGAAGAGCAAGAGGA
AGGATCAGAGGAGGAGAAGAAGGAGGAGGAGGCGGAGGACGGGGTTGATG
GCAGCGACGGTAGAGAACAGGACGGCGGCGAGGAG
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1337:31764..33248+

>mRNA_E-siliculosus-1a_F_contig1337.2037.1 ID=mRNA_E-siliculosus-1a_F_contig1337.2037.1|Name=mRNA_E-siliculosus-1a_F_contig1337.2037.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=924bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1337:31764..33248+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCTCGTCTCGGGAGGGATCGCCTGCGCGACCAGAGCTCGTTGGTCCGAAA
GGAGGCGGTCAAGGCTCGTCTCGGGAGGGATCGCCTGCGCGACCAGAGCT
CGTTGGTCCGAAAGGAGGCGGTCAAGCTCCTGTCGACGCTCCTTGAGTAC
AACCCCTACAACAGCACCCTGGACCTCAAGATCAACCAGGCCAGGTGGAA
GCAAGCGGAGGCCGAACTCCGCGCCATGAGTCCCGCCCAGAGCGAGGGCG
AGGGCGCCGAGGGCGAGGGCGAGGGTGACAAGCAGCCTGAGGCCGACCGA
GCGGGGTTCGACGCTCCTGTCGACGCTCCTTGAGTACAACCCCTACAACA
GCACCCTGGACCTCAAGATCAACCAGGCCAGGTGGAAGCAAGCGGAGGCC
GAACTCCGCGCCATGAGTCCCGCCCAGAGCGAGGGCGAGGGCGCCGAGGG
CGAGGGCGAGGGTGACAAGCAGCCTGAGGCCGACCGAGCGGGGTTCGACG
GTGATGGTGAGAGCGACGCCGGGAGCGATGAGGAGGGCGATAACGACCTC
GAGGAGGAGGAAGAGGAGGGTAAGGTGGGTTCGGAGAACGAGGACGAAGC
CGGGGGTGAAGGCGAAGAGCAAGAGGAAGGATCAGAGGAGGAGAAGAAGG
AGGAGGAGGCGGAGGACGGGGTTGATGGCAGCGACGGTAGAGAACAGGAC
GGCGGCGAGGAGGTGATGGTGAGAGCGACGCCGGGAGCGATGAGGAGGGC
GATAACGACCTCGAGGAGGAGGAAGAGGAGGGTAAGGTGGGTTCGGAGAA
CGAGGACGAAGCCGGGGGTGAAGGCGAAGAGCAAGAGGAAGGATCAGAGG
AGGAGAAGAAGGAGGAGGAGGCGGAGGACGGGGTTGATGGCAGCGACGGT
AGAGAACAGGACGGCGGCGAGGAG
back to top