prot_E-siliculosus-1a_F_contig1337.2035.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig1337.2035.1
Unique Nameprot_E-siliculosus-1a_F_contig1337.2035.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length346
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1337.2035.1 vs. uniprot
Match: D8LM33_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM33_ECTSI)

HSP 1 Score: 649 bits (1675), Expect = 7.570e-235
Identity = 340/345 (98.55%), Postives = 343/345 (99.42%), Query Frame = 0
Query:    1 MLAGRNGADVDEFDNQLNDPGQYDNPQDPASLSVVEHLRALSIRGKLTLLYVAGVIVFVLWALDWVIAFACMASFLVSAAPLFAWWSRIRFSCPLDLVVRSFGLGIFAMVWVVYMLFRLCSTGPMGRLLYMMFGRLVGVVVLIILVGLEEMVKVIFARWSKRDVAIGRETKAHQIAATATSVGYSVGFSFFMIIVLDLEVDLLLGIQADSSADMIVALLALLITTMFGTPMHVLSGYLVGLEVTRQTHFMKVALYTFLIRSLFMVNIFLWVFLFGTWQPIMAGLLLTNVLICCAMVHRIKKVEATLPVEYLQRVGYLQAFGYGVLPGGDVDEVEIPSNIDVNTLV 345
            MLAGRNGADVDEFDNQLNDPGQYDNPQDPASLSVVEHLRALSIRGKLTLLYVAGVIVFVLWALDWVIAFACMASFLVSAAPLF WWSRIRFSCPLDLVVRSFGLGIFAMVWVVYMLFRLCSTG MGRLLYMMFGRLVGVVVL+ILVGLEEMVKV+FARWSKRDVAIGRETKAHQIAATATSVGYSVGFSFFMIIVLDLEVDLLLGIQADSSADMIVALLALLITTMFGTPMHVLSGYLVGLEVTRQTHFMKVALYTFLIRSLFMVNIFLWVFLFGTWQPIMAGLLLTNVLICCAMVHRIKKVEATLPVEYLQRVGYLQAFGYGVLPGGDVDEVEIPSN+DVNTLV
Sbjct:    1 MLAGRNGADVDEFDNQLNDPGQYDNPQDPASLSVVEHLRALSIRGKLTLLYVAGVIVFVLWALDWVIAFACMASFLVSAAPLFVWWSRIRFSCPLDLVVRSFGLGIFAMVWVVYMLFRLCSTGLMGRLLYMMFGRLVGVVVLVILVGLEEMVKVVFARWSKRDVAIGRETKAHQIAATATSVGYSVGFSFFMIIVLDLEVDLLLGIQADSSADMIVALLALLITTMFGTPMHVLSGYLVGLEVTRQTHFMKVALYTFLIRSLFMVNIFLWVFLFGTWQPIMAGLLLTNVLICCAMVHRIKKVEATLPVEYLQRVGYLQAFGYGVLPGGDVDEVEIPSNVDVNTLV 345          
BLAST of mRNA_E-siliculosus-1a_F_contig1337.2035.1 vs. uniprot
Match: A0A836CLE4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLE4_9STRA)

HSP 1 Score: 180 bits (456), Expect = 5.210e-50
Identity = 130/337 (38.58%), Postives = 178/337 (52.82%), Query Frame = 0
Query:   35 VEHLRALSIRGKLTLLYVAGVIVFVLWALDWVIAFACMASFLVSAAPLFAWWSRIRFSCPLDLVVRSFGLGIFAMVWVVYMLFRLCSTGPMGRLLYMMFGRLVGVVVLIILVGLEEMVKVIFARWSKRDVAIGRETKAHQIAATATSVGYSVGFSFFMIIVL---------DLEVDLLLGIQADSSADMIVALLALLITTMFGTPMHVLSGYLVGLEVTRQTHFMKVALYTFLIRSLFMVNIFLWVFLFGTWQPIMAGLLLTNVLICCAMVHRIKKVEATLPVEYLQRVGYLQAFGYG-----------------------VLPGGDVDEVEIPSNI 339
            +E L+ALS+  KLT++YV       L + D V+   CM +      PL  WW +   +CPLD+V+RSFG+G   M   V +   L     +   + + F  ++ + + I +VG+EE+ +V+ AR  K  + + RET  HQIA TATSVGY+   +    +VL         + ++D  L      + D  VA  A LI   F  P+ VL+GY+ GL  TR+  F +V L  F +RS  MV   LW  L  +W  ++A ++ TN+ I   MV RIK+VEA LP EY QRVGYLQAFGYG                       VLPGGD DEVEIP NI
Sbjct:   25 LEQLKALSLTAKLTIVYVLVCAHLTLLSRDLVLYLGCMVAHAALIIPLLKWWQKHSHACPLDMVIRSFGMGYCGMALGVVLTLLLGFMVLILATVALPFMIVLWLGLPIYVVGIEELFRVLIARRLKSGLDMSRETITHQIAYTATSVGYAAASAALNFVVLASLEGYLAGEHDIDPDLSPDGAPALDFKVAAAAGLIRMAFSVPVQVLAGYMTGLNTTRRLPFKRVGLEAFALRSALMVLSILWELLLPSWLGLIA-VIGTNIGIVWLMVRRIKRVEAQLPQEYFQRVGYLQAFGYGXXXXXXXXXXXXXXXXXXXXXXXVLPGGDPDEVEIPDNI 360          
BLAST of mRNA_E-siliculosus-1a_F_contig1337.2035.1 vs. uniprot
Match: A0A0H5QPC6_9EUKA (Uncharacterized protein n=2 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5QPC6_9EUKA)

HSP 1 Score: 61.6 bits (148), Expect = 5.290e-7
Identity = 53/194 (27.32%), Postives = 96/194 (49.48%), Query Frame = 0
Query:  140 VVLIILVGLEEMVKVIFAR----WSKRDVAIGRETKAHQIAATA-TSVGYSVGFSFFMIIVLDLEVDLLLGIQADSSADMIVALLALLITTMFGTPMHVLSGYLVGLEVTRQT------HFMKVALYTFLIRSLFMVNIFLWVFLFGTWQPIMAGLLLTNVLICCAMVHRIKKVEATLPVEYLQRVGYLQAFGY 322
            +VL++ V  EE+ K +  +     ++ D A  RET+  ++  +   +  +S+G+S +      L    LL      S  + + LL  ++  +   P HV+SGYL+GL+++R+T      H + +     L R+ F+  +F W    G  +    G ++T+VLI     + I+ ++  LP+EYL+  GY    GY
Sbjct:  141 IVLLLQVSAEEIFKYVMMKKKVEMTESDDAHVRETQLCRLRNSLFMATSFSLGYSTYQ----GLATSALLS---QESVTIWIPLLISVLVALLYIPSHVMSGYLIGLQLSRRTVLNENIHAIVILTTPILFRTCFLFQLFFWA---GKQEHRFLGWVVTSVLISVVFAYYIRHIKKKLPIEYLESAGYSTLLGY 324          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1337.2035.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LM33_ECTSI7.570e-23598.55Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CLE4_9STRA5.210e-5038.58Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A0H5QPC6_9EUKA5.290e-727.32Uncharacterized protein n=2 Tax=Spongospora subter... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 279..296
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 241..251
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..42
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 274..278
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 118..128
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 196..214
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 129..148
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 62..66
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 43..61
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 67..85
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 97..117
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 86..96
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 252..273
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 175..195
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 149..174
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 215..240
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 297..345
NoneNo IPR availableTMHMMTMhelixcoord: 129..148
NoneNo IPR availableTMHMMTMhelixcoord: 252..274
NoneNo IPR availableTMHMMTMhelixcoord: 175..197
NoneNo IPR availableTMHMMTMhelixcoord: 279..296
NoneNo IPR availableTMHMMTMhelixcoord: 97..119
NoneNo IPR availableTMHMMTMhelixcoord: 217..239
NoneNo IPR availableTMHMMTMhelixcoord: 66..85
NoneNo IPR availableTMHMMTMhelixcoord: 40..62

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1337contigE-siliculosus-1a_F_contig1337:22420..27022 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1337.2035.1mRNA_E-siliculosus-1a_F_contig1337.2035.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig1337 21073..27134 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig1337.2035.1 ID=prot_E-siliculosus-1a_F_contig1337.2035.1|Name=mRNA_E-siliculosus-1a_F_contig1337.2035.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=346bp
MLAGRNGADVDEFDNQLNDPGQYDNPQDPASLSVVEHLRALSIRGKLTLL
YVAGVIVFVLWALDWVIAFACMASFLVSAAPLFAWWSRIRFSCPLDLVVR
SFGLGIFAMVWVVYMLFRLCSTGPMGRLLYMMFGRLVGVVVLIILVGLEE
MVKVIFARWSKRDVAIGRETKAHQIAATATSVGYSVGFSFFMIIVLDLEV
DLLLGIQADSSADMIVALLALLITTMFGTPMHVLSGYLVGLEVTRQTHFM
KVALYTFLIRSLFMVNIFLWVFLFGTWQPIMAGLLLTNVLICCAMVHRIK
KVEATLPVEYLQRVGYLQAFGYGVLPGGDVDEVEIPSNIDVNTLV*
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