mRNA_E-siliculosus-1a_F_contig1337.2035.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1337.2035.1 vs. uniprot
Match: D8LM33_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM33_ECTSI) HSP 1 Score: 649 bits (1675), Expect = 4.470e-227 Identity = 340/345 (98.55%), Postives = 343/345 (99.42%), Query Frame = 2
Query: 113 MLAGRNGADVDEFDNQLNDPGQYDNPQDPASLSVVEHLRALSIRGKLTLLYVAGVIVFVLWALDWVIAFACMASFLVSAAPLFAWWSRIRFSCPLDLVVRSFGLGIFAMVWVVYMLFRLCSTGPMGRLLYMMFGRLVGVVVLIILVGLEEMVKVIFARWSKRDVAIGRETKAHQIAATATSVGYSVGFSFFMIIVLDLEVDLLLGIQADSSADMIVALLALLITTMFGTPMHVLSGYLVGLEVTRQTHFMKVALYTFLIRSLFMVNIFLWVFLFGTWQPIMAGLLLTNVLICCAMVHRIKKVEATLPVEYLQRVGYLQAFGYGVLPGGDVDEVEIPSNIDVNTLV 1147
MLAGRNGADVDEFDNQLNDPGQYDNPQDPASLSVVEHLRALSIRGKLTLLYVAGVIVFVLWALDWVIAFACMASFLVSAAPLF WWSRIRFSCPLDLVVRSFGLGIFAMVWVVYMLFRLCSTG MGRLLYMMFGRLVGVVVL+ILVGLEEMVKV+FARWSKRDVAIGRETKAHQIAATATSVGYSVGFSFFMIIVLDLEVDLLLGIQADSSADMIVALLALLITTMFGTPMHVLSGYLVGLEVTRQTHFMKVALYTFLIRSLFMVNIFLWVFLFGTWQPIMAGLLLTNVLICCAMVHRIKKVEATLPVEYLQRVGYLQAFGYGVLPGGDVDEVEIPSN+DVNTLV
Sbjct: 1 MLAGRNGADVDEFDNQLNDPGQYDNPQDPASLSVVEHLRALSIRGKLTLLYVAGVIVFVLWALDWVIAFACMASFLVSAAPLFVWWSRIRFSCPLDLVVRSFGLGIFAMVWVVYMLFRLCSTGLMGRLLYMMFGRLVGVVVLVILVGLEEMVKVVFARWSKRDVAIGRETKAHQIAATATSVGYSVGFSFFMIIVLDLEVDLLLGIQADSSADMIVALLALLITTMFGTPMHVLSGYLVGLEVTRQTHFMKVALYTFLIRSLFMVNIFLWVFLFGTWQPIMAGLLLTNVLICCAMVHRIKKVEATLPVEYLQRVGYLQAFGYGVLPGGDVDEVEIPSNVDVNTLV 345
BLAST of mRNA_E-siliculosus-1a_F_contig1337.2035.1 vs. uniprot
Match: A0A836CLE4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLE4_9STRA) HSP 1 Score: 180 bits (456), Expect = 1.960e-46 Identity = 130/337 (38.58%), Postives = 178/337 (52.82%), Query Frame = 2
Query: 215 VEHLRALSIRGKLTLLYVAGVIVFVLWALDWVIAFACMASFLVSAAPLFAWWSRIRFSCPLDLVVRSFGLGIFAMVWVVYMLFRLCSTGPMGRLLYMMFGRLVGVVVLIILVGLEEMVKVIFARWSKRDVAIGRETKAHQIAATATSVGYSVGFSFFMIIVL---------DLEVDLLLGIQADSSADMIVALLALLITTMFGTPMHVLSGYLVGLEVTRQTHFMKVALYTFLIRSLFMVNIFLWVFLFGTWQPIMAGLLLTNVLICCAMVHRIKKVEATLPVEYLQRVGYLQAFGYG-----------------------VLPGGDVDEVEIPSNI 1129
+E L+ALS+ KLT++YV L + D V+ CM + PL WW + +CPLD+V+RSFG+G M V + L + + + F ++ + + I +VG+EE+ +V+ AR K + + RET HQIA TATSVGY+ + +VL + ++D L + D VA A LI F P+ VL+GY+ GL TR+ F +V L F +RS MV LW L +W ++A ++ TN+ I MV RIK+VEA LP EY QRVGYLQAFGYG VLPGGD DEVEIP NI
Sbjct: 25 LEQLKALSLTAKLTIVYVLVCAHLTLLSRDLVLYLGCMVAHAALIIPLLKWWQKHSHACPLDMVIRSFGMGYCGMALGVVLTLLLGFMVLILATVALPFMIVLWLGLPIYVVGIEELFRVLIARRLKSGLDMSRETITHQIAYTATSVGYAAASAALNFVVLASLEGYLAGEHDIDPDLSPDGAPALDFKVAAAAGLIRMAFSVPVQVLAGYMTGLNTTRRLPFKRVGLEAFALRSALMVLSILWELLLPSWLGLIA-VIGTNIGIVWLMVRRIKRVEAQLPQEYFQRVGYLQAFGYGXXXXXXXXXXXXXXXXXXXXXXXVLPGGDPDEVEIPDNI 360
BLAST of mRNA_E-siliculosus-1a_F_contig1337.2035.1 vs. uniprot
Match: A0A0H5QPC6_9EUKA (Uncharacterized protein n=2 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5QPC6_9EUKA) HSP 1 Score: 61.6 bits (148), Expect = 2.300e-6 Identity = 53/194 (27.32%), Postives = 96/194 (49.48%), Query Frame = 2
Query: 530 VVLIILVGLEEMVKVIFAR----WSKRDVAIGRETKAHQIAATA-TSVGYSVGFSFFMIIVLDLEVDLLLGIQADSSADMIVALLALLITTMFGTPMHVLSGYLVGLEVTRQT------HFMKVALYTFLIRSLFMVNIFLWVFLFGTWQPIMAGLLLTNVLICCAMVHRIKKVEATLPVEYLQRVGYLQAFGY 1078
+VL++ V EE+ K + + ++ D A RET+ ++ + + +S+G+S + L LL S + + LL ++ + P HV+SGYL+GL+++R+T H + + L R+ F+ +F W G + G ++T+VLI + I+ ++ LP+EYL+ GY GY
Sbjct: 141 IVLLLQVSAEEIFKYVMMKKKVEMTESDDAHVRETQLCRLRNSLFMATSFSLGYSTYQ----GLATSALLS---QESVTIWIPLLISVLVALLYIPSHVMSGYLIGLQLSRRTVLNENIHAIVILTTPILFRTCFLFQLFFWA---GKQEHRFLGWVVTSVLISVVFAYYIRHIKKKLPIEYLESAGYSTLLGY 324 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1337.2035.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1337.2035.1 >prot_E-siliculosus-1a_F_contig1337.2035.1 ID=prot_E-siliculosus-1a_F_contig1337.2035.1|Name=mRNA_E-siliculosus-1a_F_contig1337.2035.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=346bp MLAGRNGADVDEFDNQLNDPGQYDNPQDPASLSVVEHLRALSIRGKLTLLback to top mRNA from alignment at E-siliculosus-1a_F_contig1337:21073..27134- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1337.2035.1 ID=mRNA_E-siliculosus-1a_F_contig1337.2035.1|Name=mRNA_E-siliculosus-1a_F_contig1337.2035.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=6062bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1337:21073..27134- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1337:21073..27134- >mRNA_E-siliculosus-1a_F_contig1337.2035.1 ID=mRNA_E-siliculosus-1a_F_contig1337.2035.1|Name=mRNA_E-siliculosus-1a_F_contig1337.2035.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2076bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1337:21073..27134- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |