prot_E-siliculosus-1a_F_contig1336.2030.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig1336.2030.1
Unique Nameprot_E-siliculosus-1a_F_contig1336.2030.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length421
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1336.2030.1 vs. uniprot
Match: D7FQD2_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQD2_ECTSI)

HSP 1 Score: 620 bits (1600), Expect = 6.230e-221
Identity = 378/422 (89.57%), Postives = 384/422 (91.00%), Query Frame = 0 
Query:    1 MNFVRSNEWVSRRRARGGSFDSPAVRVNIVDRRTGPASSGITS--EREVEIPTLGILCLRSLESSLGKGLATFDLQDLPLGLAETVYDFVASAGSRMAHMEILRALAPILRQHVNSLDFSRAKVVGDSALLELANGCDSSLVQLNLSSCCFITDGALLATLLRCPGLKDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSGVAYIAYLPALEQLCLARCNVSDAAVVAITTGVCRQSLRWLDLTGTAISGAAAASLRGLQRLEYLALSSTGVSATSVAALARDLRLPAFLPEAPKTRARSSRALLLGSKWSETQLRSLPKKRXXXXXXXXXXXXXAKSWRNSSASVVCYERDGPSKAMRLIGAAYRVSSSSSSSPCADDPVEVGFRDDGIEEGGRKLLLNLVQGIVRLWPAVPSR 420
            MNFVRSNEWVSRRRARGGSFDSPAVRVNIVDRRTGPASSG+ S  EREVEIPTLGILCLRSLESSLGKGLATFDLQDLPLGLAETVYDFVASAGSRMAHMEILRALAPILRQHV+SLDFSRAK+VGDSALLELANGCDSSLVQLNLSSCCFITDGALLATLL+CPG+KD  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSGVAYIAYLPALEQLCLARCNVSDAAVVAITTGVCRQSLRWLDLT TAIS AAAASLR LQRLE             VAALARDLRLPAFLPEAPKTRARSSRALLLGSKWSETQLRSLPKKR             AKSWRNS ASV+CYERDGPSKAMRLIGAA RVSSSSSS PCADD VEVGFRDDGIEEGGRKLLLNLVQGIVRLWPAVPSR
Sbjct:    1 MNFVRSNEWVSRRRARGGSFDSPAVRVNIVDRRTGPASSGVRSGSEREVEIPTLGILCLRSLESSLGKGLATFDLQDLPLGLAETVYDFVASAGSRMAHMEILRALAPILRQHVSSLDFSRAKIVGDSALLELANGCDSSLVQLNLSSCCFITDGALLATLLKCPGVKDLTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSGVAYIAYLPALEQLCLARCNVSDAAVVAITTGVCRQSLRWLDLTCTAISAAAAASLRDLQRLEXXXXXXXXXXXXXVAALARDLRLPAFLPEAPKTRARSSRALLLGSKWSETQLRSLPKKRAATTAATAAGAP-AKSWRNSIASVICYERDGPSKAMRLIGAASRVSSSSSS-PCADDLVEVGFRDDGIEEGGRKLLLNLVQGIVRLWPAVPSR 420
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1336.2030.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FQD2_ECTSI6.230e-22189.57Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006553Leucine-rich repeat, cysteine-containing subtypeSMARTSM00367LRR_CC_2coord: 162..187
e-value: 0.081
score: 22.0
coord: 214..237
e-value: 56.0
score: 8.7
coord: 264..288
e-value: 560.0
score: 0.9
coord: 188..213
e-value: 0.016
score: 24.4
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 95..295
e-value: 2.8E-31
score: 110.4
IPR001611Leucine-rich repeatPFAMPF13516LRR_6coord: 137..154
e-value: 0.91
score: 9.7
coord: 188..211
e-value: 0.098
score: 12.8
NoneNo IPR availablePANTHERPTHR13382:SF6SCF E3 UBIQUITIN LIGASE COMPLEX F-BOX PROTEIN GRR1coord: 110..285
NoneNo IPR availablePANTHERPTHR13382MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR Bcoord: 110..285
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 110..274

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1336contigE-siliculosus-1a_F_contig1336:22668..25219 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1336.2030.1mRNA_E-siliculosus-1a_F_contig1336.2030.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig1336 22668..25556 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig1336.2030.1 ID=prot_E-siliculosus-1a_F_contig1336.2030.1|Name=mRNA_E-siliculosus-1a_F_contig1336.2030.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=421bp
MNFVRSNEWVSRRRARGGSFDSPAVRVNIVDRRTGPASSGITSEREVEIP
TLGILCLRSLESSLGKGLATFDLQDLPLGLAETVYDFVASAGSRMAHMEI
LRALAPILRQHVNSLDFSRAKVVGDSALLELANGCDSSLVQLNLSSCCFI
TDGALLATLLRCPGLKDLTLSGCRGITDETAYHLPHRCTKLTTLNLAGLE
GITGSGVAYIAYLPALEQLCLARCNVSDAAVVAITTGVCRQSLRWLDLTG
TAISGAAAASLRGLQRLEYLALSSTGVSATSVAALARDLRLPAFLPEAPK
TRARSSRALLLGSKWSETQLRSLPKKRAAAAAAAAAAGPPAKSWRNSSAS
VVCYERDGPSKAMRLIGAAYRVSSSSSSSPCADDPVEVGFRDDGIEEGGR
KLLLNLVQGIVRLWPAVPSR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001611Leu-rich_rpt
IPR032675LRR_dom_sf
IPR006553Leu-rich_rpt_Cys-con_subtyp