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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1336.2030.1 vs. uniprot
Match: D7FQD2_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQD2_ECTSI) HSP 1 Score: 621 bits (1601), Expect = 9.180e-221 Identity = 378/422 (89.57%), Postives = 384/422 (91.00%), Query Frame = 1
Query: 58 MNFVRSNEWVSRRRARGGSFDSPAVRVNIVDRRTGPASSGITS--EREVEIPTLGILCLRSLESSLGKGLATFDLQDLPLGLAETVYDFVASAGSRMAHMEILRALAPILRQHVNSLDFSRAKVVGDSALLELANGCDSSLVQLNLSSCCFITDGALLATLLRCPGLKDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSGVAYIAYLPALEQLCLARCNVSDAAVVAITTGVCRQSLRWLDLTGTAISGAAAASLRGLQRLEYLALSSTGVSATSVAALARDLRLPAFLPEAPKTRARSSRALLLGSKWSETQLRSLPKKRXXXXXXXXXXXXXAKSWRNSSASVVCYERDGPSKAMRLIGAAYRVSSSSSSSPCADDPVEVGFRDDGIEEGGRKLLLNLVQGIVRLWPAVPSR 1317
MNFVRSNEWVSRRRARGGSFDSPAVRVNIVDRRTGPASSG+ S EREVEIPTLGILCLRSLESSLGKGLATFDLQDLPLGLAETVYDFVASAGSRMAHMEILRALAPILRQHV+SLDFSRAK+VGDSALLELANGCDSSLVQLNLSSCCFITDGALLATLL+CPG+KD XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSGVAYIAYLPALEQLCLARCNVSDAAVVAITTGVCRQSLRWLDLT TAIS AAAASLR LQRLE VAALARDLRLPAFLPEAPKTRARSSRALLLGSKWSETQLRSLPKKR AKSWRNS ASV+CYERDGPSKAMRLIGAA RVSSSSSS PCADD VEVGFRDDGIEEGGRKLLLNLVQGIVRLWPAVPSR
Sbjct: 1 MNFVRSNEWVSRRRARGGSFDSPAVRVNIVDRRTGPASSGVRSGSEREVEIPTLGILCLRSLESSLGKGLATFDLQDLPLGLAETVYDFVASAGSRMAHMEILRALAPILRQHVSSLDFSRAKIVGDSALLELANGCDSSLVQLNLSSCCFITDGALLATLLKCPGVKDLTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSGVAYIAYLPALEQLCLARCNVSDAAVVAITTGVCRQSLRWLDLTCTAISAAAAASLRDLQRLEXXXXXXXXXXXXXVAALARDLRLPAFLPEAPKTRARSSRALLLGSKWSETQLRSLPKKRAATTAATAAGAP-AKSWRNSIASVICYERDGPSKAMRLIGAASRVSSSSSS-PCADDLVEVGFRDDGIEEGGRKLLLNLVQGIVRLWPAVPSR 420
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 1263 |
| Model size | 1320 |
| Exons | 5 |
| Ec32 ortholog | Ec-01_006550.2 |
| Ec32 ortholog description | Hypothetical leucine rich repeat protein |
| Hectar predicted targeting category | other localisation |
| BRITE | ko00000,ko04121 |
| Best eggNOG OG | NA|NA|NA |
| Best tax level | Eukaryota |
| COG Functional cat. | KLT |
| EggNOG OGs | KOG4341@1,KOG4341@2759 |
| EggNOG free text desc. | modulation by host of viral RNA genome replication |
| KEGG ko | ko:K10268 |
| Seed eggNOG ortholog | 2880.D7FQD2 |
| Seed ortholog evalue | 1.3e-176 |
| Seed ortholog score | 625.9 |
| Taxonomic scope | Eukaryota |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1336.2030.1 >prot_E-siliculosus-1a_F_contig1336.2030.1 ID=prot_E-siliculosus-1a_F_contig1336.2030.1|Name=mRNA_E-siliculosus-1a_F_contig1336.2030.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=421bp
MNFVRSNEWVSRRRARGGSFDSPAVRVNIVDRRTGPASSGITSEREVEIP
TLGILCLRSLESSLGKGLATFDLQDLPLGLAETVYDFVASAGSRMAHMEI
LRALAPILRQHVNSLDFSRAKVVGDSALLELANGCDSSLVQLNLSSCCFI
TDGALLATLLRCPGLKDLTLSGCRGITDETAYHLPHRCTKLTTLNLAGLE
GITGSGVAYIAYLPALEQLCLARCNVSDAAVVAITTGVCRQSLRWLDLTG
TAISGAAAASLRGLQRLEYLALSSTGVSATSVAALARDLRLPAFLPEAPK
TRARSSRALLLGSKWSETQLRSLPKKRAAAAAAAAAAGPPAKSWRNSSAS
VVCYERDGPSKAMRLIGAAYRVSSSSSSSPCADDPVEVGFRDDGIEEGGR
KLLLNLVQGIVRLWPAVPSR* back to topmRNA from alignment at E-siliculosus-1a_F_contig1336:22668..25556- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1336.2030.1 ID=mRNA_E-siliculosus-1a_F_contig1336.2030.1|Name=mRNA_E-siliculosus-1a_F_contig1336.2030.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2889bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1336:22668..25556- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATTTACGCCTAGACGGCGGAAGTGCAAGTTGTGGAAATGTGAGTGGTCTT
CTGGCCTTGCTGCTGTCCACACGTCCTATGATAGTACCATTCATTGCGCT
TGGTGAGGATGGATGGTCGCTATTTGTCTTTGAAGTCAGACGACAAGCAG
CAAAACTACACATACGTAGGCTAAGGACCGAAGAGGTTCAAGGGTTGAAC
CTATACAGCAGCAGCTGTACTCGCAGCACACCGGCTAAACAGGGTTTACG
AATCTCTCTACACCCCCCCCCTCCCACCCCCGTCGCCCGGACCAACCGGC
GGGGGCTGCTGCGAACAGATAAGGCGCTGCTACGTTGATGAATTTCGTGA
GGTCTAACGAGTGGGTTTCTCGCCGCCGTGCACGCGGCGGGTCTTTCGAC
TCACCGGCGGTACGAGTCAACATCGTCGACCGCCGAACTGGTCCCGCAAG
CAGCGGCATCACAAGCGAACGGGAGGTTGAGATCCCAACTCTGGGCATTC
TTTGCCTCCGGAGCTTGGAGTCCTCCCTCGGCAAGGGCCTCGCGACCTTC
GACCTTCAGGACCTTCCCCTGGGGCTGGCCGAGACTGTGTACGACTTCGT
TGCCTCCGCAGGTTCGCGAATGGCCCACATGGAAATCCTTCGAGCGCTCG
CCCCAATATTGCGACAGCACGTAAACTCCCTCGACTTCAGCAGAGCCAAG
GTCAGGGTCCCATCGCGAGGCTGTTGTTGACTACATATGTACGTCGTATA
TGCTACACATACTGGGACGAGTACCAGGTGTACTACTGTACAGGAGTAGG
TTGCGGCGGGCGTTCGGACTTAGCACCGGTAAGCAGTTGTTGGGAGGAAG
TCGTTCAACTATCTGTAATCCGTGCTGTACATCGCAATAACCTGCGTAGC
AAACACATCGGGTCGACGGGCTGCGGCATTCGTTTTCGCTCCACGGGGCT
AGTACGTCGTGCGTAAGTCTATATGCTGCGGCACCTTTCGAGGACTGCCC
ACAAAGCGGGAGACGACCTATACAGCCTGTAAGCGTAGGAATGCGATTCC
GTTTCACGCAGCATGTCTTCCGTCTACTTGTGACAGGTCGTGGGGGACTC
GGCCCTGCTGGAGCTGGCAAACGGGTGCGACTCATCTCTGGTTCAGCTTA
ACCTCAGCAGCTGTTGTTTCATCACGGACGGTGCTCTCCTCGCGACGCTG
CTCAGGTGCCCTGGTCTGAAGGATCTCACCCTTTCGGGGTGCCGCGGTAT
CACTGATGAGGTATGCGAGTAGTAAAGCTACATACCCGTGCCGCTGTTTG
GTTTCACAAGGGTCGGATTGAGAACGTATCGGAGTGAGCAAGTTTGTTCA
GCATCATCTATCCATCTGTTGCATGCGCCGTGCAGAAGGAGAAACATGCC
GTACCCCAATCGTACCGCGCAGCTGCCCCCCTCCCTGCCTGCGCAGCTGT
TCGGACGTTGCTGTAGTGCTGCAGCAAGACCTGCTCAACAATTGCCGGTT
TTGTTTTTATGACGCCAGCACTGCCTGCTGTGCAACGGGAAAGGAATCAT
CATGTACCGCTGTGTAGGTCGCGCTTCACGCAGGTCGGTCAAGTGGACTA
TTTACCCCGTGCACGCGTGTCACTTTGTAAGAAGCTCAGCATGAGCATCG
TCCTTTGGTCCGCGTCGATGGTTGTTATCTCCGTCGTTTCGACTTAACTC
GTACCGCAGACTGCCTACCACTTGCCGCACCGATGCACGAAGCTGACAAC
GCTCAACCTGGCGGGACTGGAAGGGATAACCGGAAGTGGCGTGGCCTACA
TTGCCTACCTCCCTGCCCTCGAGCAGCTTTGCCTCGCGAGATGTAACGTG
AGAGAGCGTTGTACAAAGTTCTCTTGTCGTACCGTACGTTGAATGGTGAA
GAACGAAGCGATATTGCAGCTTTTCGGCTACCTCTCACGAAGAAGTAGGA
GGAAGAGGAGGAATTGAGTGTTCTTCCGGCCGGCGGGCGGGGCAGGGAGG
GGGGCGTGCAGCGACCTTGCCCGCCGTCGCTTTCCGTGGAGTACTGTATA
TCGTTTGCGCAACGGGCGCGTCTTCCGTTATTTGGAGCACAAGGTTTCTA
CGCGTTTCGTGGCCTGCAATAAAACCAAACTACCTGTATGCATGTATGCG
TCGTACAACACAGCATTGACGGGAGCGTGAGTCGCGTGTAGGCAATACGT
ATACACACATGCCAGCTGTTGTCTCCCGACACCCTTCGCCCCCTGCTCGC
CGCCTTAGCTTTCTCCTGCTCTCTCCCCACCCTCCCCACGTCGCACAGCA
GGTCAGCGACGCCGCCGTGGTCGCGATCACGACCGGCGTGTGCCGACAGT
CCCTGAGGTGGCTGGACCTAACCGGCACGGCGATATCGGGCGCGGCCGCG
GCGTCCCTCCGAGGCCTGCAGCGGCTGGAGTACCTCGCCCTGTCTTCGAC
GGGCGTGTCCGCAACGTCCGTGGCGGCACTCGCCCGCGACCTGCGATTGC
CCGCCTTCCTCCCGGAGGCGCCGAAGACGAGGGCAAGGTCTAGCCGAGCG
CTTCTGCTGGGATCGAAATGGTCTGAAACGCAGCTCCGCAGCCTACCGAA
AAAACGGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCAGGGCCCCCCGCCA
AATCTTGGCGAAACAGCAGTGCGTCGGTCGTCTGCTACGAGCGTGACGGC
CCGAGCAAGGCGATGCGCCTCATCGGGGCGGCTTATCGAGTGTCCTCTTC
TTCTTCCTCCTCTCCATGCGCGGACGACCCTGTGGAGGTGGGCTTCCGAG
ACGATGGCATCGAAGAGGGGGGGCGGAAGCTGCTGCTGAACCTGGTGCAA
GGCATCGTTAGGTTGTGGCCGGCGGTCCCCTCGCGCTGA back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1336:22668..25556- >mRNA_E-siliculosus-1a_F_contig1336.2030.1 ID=mRNA_E-siliculosus-1a_F_contig1336.2030.1|Name=mRNA_E-siliculosus-1a_F_contig1336.2030.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2526bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1336:22668..25556- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAATTTCGTGAGGTCTAACGAGTGGGTTTCTCGCCGCCGTGCACGCGG
CGGGTCTTTCGACTCACCGGCGGTACGAGTCAACATCGTCGACCGCCGAA
CTGGTCCCGCAAGCAGCGGCATCACAAGCGAACGGGAGGTTGAGATCCCA
ACTCTGGGCATTCTTTGCCTCCGGAGCTTGGAGTCCTCCCTCGGCAAGGG
CCTCGCGACCTTCGACCTTCAGGACCTTCCCCTGGGGCTGGCCGAGACTG
TGTACGACTTCGTTGCCTCCGCAGGTTCGCGAATGGCCCACATGGAAATC
CTTCGAGCGCTCGCCCCAATATTGCGACAGCACGTAAACTCCCTCGACTT
CAGCAGAGCCAAGATGAATTTCGTGAGGTCTAACGAGTGGGTTTCTCGCC
GCCGTGCACGCGGCGGGTCTTTCGACTCACCGGCGGTACGAGTCAACATC
GTCGACCGCCGAACTGGTCCCGCAAGCAGCGGCATCACAAGCGAACGGGA
GGTTGAGATCCCAACTCTGGGCATTCTTTGCCTCCGGAGCTTGGAGTCCT
CCCTCGGCAAGGGCCTCGCGACCTTCGACCTTCAGGACCTTCCCCTGGGG
CTGGCCGAGACTGTGTACGACTTCGTTGCCTCCGCAGGTTCGCGAATGGC
CCACATGGAAATCCTTCGAGCGCTCGCCCCAATATTGCGACAGCACGTAA
ACTCCCTCGACTTCAGCAGAGCCAAGGTCGTGGGGGACTCGGCCCTGCTG
GAGCTGGCAAACGGGTGCGACTCATCTCTGGTTCAGCTTAACCTCAGCAG
CTGTTGTTTCATCACGGACGGTGCTCTCCTCGCGACGCTGCTCAGGTGCC
CTGGTCTGAAGGATCTCACCCTTTCGGGGTGCCGCGGTATCACTGATGAG
GTCGTGGGGGACTCGGCCCTGCTGGAGCTGGCAAACGGGTGCGACTCATC
TCTGGTTCAGCTTAACCTCAGCAGCTGTTGTTTCATCACGGACGGTGCTC
TCCTCGCGACGCTGCTCAGGTGCCCTGGTCTGAAGGATCTCACCCTTTCG
GGGTGCCGCGGTATCACTGATGAGACTGCCTACCACTTGCCGCACCGATG
CACGAAGCTGACAACGCTCAACCTGGCGGGACTGGAAGGGATAACCGGAA
GTGGCGTGGCCTACATTGCCTACCTCCCTGCCCTCGAGCAGCTTTGCCTC
GCGAGATGTAACACTGCCTACCACTTGCCGCACCGATGCACGAAGCTGAC
AACGCTCAACCTGGCGGGACTGGAAGGGATAACCGGAAGTGGCGTGGCCT
ACATTGCCTACCTCCCTGCCCTCGAGCAGCTTTGCCTCGCGAGATGTAAC
GTCAGCGACGCCGCCGTGGTCGCGATCACGACCGGCGTGTGCCGACAGTC
CCTGAGGTGGCTGGACCTAACCGGCACGGCGATATCGGGCGCGGCCGCGG
CGTCCCTCCGAGGCCTGCAGCGGCTGGAGTACCTCGCCCTGTCTTCGACG
GGCGTGTCCGCAACGTCCGTGGCGGCACTCGCCCGCGACCTGCGATTGCC
CGCCTTCCTCCCGGAGGCGCCGAAGACGAGGGCAAGGTCTAGCCGAGCGC
TTCTGCTGGGATCGAAATGGTCTGAAACGCAGCTCCGCAGCCTACCGAAA
AAACGGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCAGGGCCCCCCGCCAA
ATCTTGGCGAAACAGCAGTGCGTCGGTCGTCTGCTACGAGCGTGACGGCC
CGAGCAAGGCGATGCGCCTCATCGGGGCGGCTTATCGAGTGTCCTCTTCT
TCTTCCTCCTCTCCATGCGCGGACGACCCTGTGGAGGTGGGCTTCCGAGA
CGATGGCATCGAAGAGGGGGGGCGGAAGCTGCTGCTGAACCTGGTGCAAG
GCATCGTTAGGTTGTGGCCGGCGGTCCCCTCGCGCTGAGTCAGCGACGCC
GCCGTGGTCGCGATCACGACCGGCGTGTGCCGACAGTCCCTGAGGTGGCT
GGACCTAACCGGCACGGCGATATCGGGCGCGGCCGCGGCGTCCCTCCGAG
GCCTGCAGCGGCTGGAGTACCTCGCCCTGTCTTCGACGGGCGTGTCCGCA
ACGTCCGTGGCGGCACTCGCCCGCGACCTGCGATTGCCCGCCTTCCTCCC
GGAGGCGCCGAAGACGAGGGCAAGGTCTAGCCGAGCGCTTCTGCTGGGAT
CGAAATGGTCTGAAACGCAGCTCCGCAGCCTACCGAAAAAACGGGCGGCG
GCGGCGGCGGCGGCGGCGGCGGCAGGGCCCCCCGCCAAATCTTGGCGAAA
CAGCAGTGCGTCGGTCGTCTGCTACGAGCGTGACGGCCCGAGCAAGGCGA
TGCGCCTCATCGGGGCGGCTTATCGAGTGTCCTCTTCTTCTTCCTCCTCT
CCATGCGCGGACGACCCTGTGGAGGTGGGCTTCCGAGACGATGGCATCGA
AGAGGGGGGGCGGAAGCTGCTGCTGAACCTGGTGCAAGGCATCGTTAGGT
TGTGGCCGGCGGTCCCCTCGCGCTGA back to top
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