prot_E-siliculosus-1a_F_contig1335.2024.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_E-siliculosus-1a_F_contig1335.2024.1
Unique Name	prot_E-siliculosus-1a_F_contig1335.2024.1
Type	polypeptide
Organism	Ectocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length	1132

Homology

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BLAST of mRNA_E-siliculosus-1a_F_contig1335.2024.1 vs. uniprot
Match: D7FLV0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLV0_ECTSI)

HSP 1 Score: 1592 bits (4123), Expect = 0.000e+0
Identity = 949/1087 (87.30%), Postives = 970/1087 (89.24%), Query Frame = 0

Query:   46 MIFGATHAASAVIPVAAGGTGRLLHSYGCCCAGRRRSTTVRPWAQGVSALYSVGHGNGKQVASTDSSSRSSSGDRSHTKRRQQLRDKQTSLLGEKEEAPAGQWEXXXXXXXXXXTVSSRLQDVVSQLQGELRAGATPQVRSSIKLDGLFADLRGREDTSQGCNSKTPTTTGPKTIPLKKSPKQPRRLPSGKCSAAESGDAALEGTDDLESLSDMLDRVQASAKARDLAEAEARSLALRSGGPIGDDPARSWVTIGNQRDMKTRFRNIQEGRVGWAVLPLVMKAKQAGIPLSTGVYNAAIAAYAGTPRKYGDALRVLNMLRREEAPGVRPDLGSYNAAMWVCSEAGQWRLVMELMTQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLVEAAGMGSAAPRKHMIEVVHEMEQAGVEPNSYTFTTLLNCLARRRKTFDGFQARLRLVDARAPLLPHGHRAGLQFCDAYGDWRRAMILMEDMRVAKRRPSAPMYLLAVKACAKGGQWERALSLMVERRALDVREEKEANEKNGGKPLQRKKMEAAAKAKKQAARTHMKTLEVVLSAVSEAGQFEVAMRLVQQMRAAGGTPSKKCYLYTLRAASKWGRWDVIESLMKDMRALRVGVVAEKEIDAMDDGVVVNNGEGKGAGGEQHRPRMLSSDCYAPLVEAYAQASMWERAIEAYQEGFVVGREGGEAGPVKYRVYECVLKACVEVSDGRTALDVIGRQAAEPKALQKLSSAIASEGGGKGAELSGGPPDRRCWCLAAEALGRAGMIKEGHRVLMAMVDSGIPLRESTKTDVPSLMPVPTTAGGGFDWNQRXXXXXXXXXXXXXXXXXXGDPGLPPPAAMAEMQEAVVRERLGLFSSWEDGRGGGSAVTGGPRESRNAVQVSKSYLSGVEFPKGVVNGEGCTAAAVAAATNSGEKTLGMGWLLANDLTSEKSEMERDVQEGGLERKRRRMREFSLKRREQQKKLERIRTAGAGDRSGRINGGLPVGKADDAGMGVAAGLDLRPGGRRGRNEALTLRIRVRGRRTGILRSFRGANDRPRRQDRVRSGGXXXXXX-DGARPEVL 1131
            MIFGATHAASA IPVAAGGTGRLLHSYGC                                                                            XXXXXXXXXTVSSRLQDVVSQLQGELRAG TPQVRSSIKLD LFADLRG+EDTS+G NSKTPTTTGPKTIP K SPKQPRRLPSGK  AA SGDAAL+ TDDLESLS+MLDRVQASAKARDLAEAEARSL LRSGGPIGDDPARSWVTIGNQRDMKTRFRNI+EGRVGWAVLPLVMKAKQAGIPLSTGVYNAAIAAY+GTPRKY DALRVLNMLRREE PGVRPDLGSYNAAMWVCSEAGQWRLVMELMTQ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLVEAAGMGSAAPRKHMIEVVHEMEQAGVEPNSYTFTTLLNCLARRRK FDGFQ   RLVDARAPLLPHGHRAGLQFCDAYGDWRRAMILMEDMRVAKRRPS PMYLLAVKACAKG QWERALSLMVERRALDVREEKEANEKNGGKPLQR+KMEAAAKAKKQAARTHMKTLEVVLSAVSEAGQFEVAMRLVQQMRAAGGTPSKKCYLYTLRAASKWGRWDVIESLMKDMRALRVGVVAEKE DAMDDGVVVNNGEGKG GGEQHRPRMLSSDCYAPLVEAYAQASMWERAIEAYQEGFVVGREGGEAGPVKYRV+ECVLKACVEVSDGRTAL+VIGRQAAEPKALQKLSSAI +EG GKG ELSGGPPDRRCWCLAAEALGRAGMI+EGHRVLMAMVDSGIPLRESTKTDVPSLMP+PTT GGGF+W+  XXXXXXXXXXXXXXXXXX  PGLPPPAAMAEMQEAVVRERLGLFSS EDG GGGSA+TGGPRESRNAVQVSKSYLSG+EFPKGVVNGEGCTAAAVAAATN GEKTLGMGWLLANDL SEKSEMERDVQEGGLERKRRRMREFSLKRREQQKKLERI T GAG RSGR+NGGLPVGKADDAG+GV AGLDLRPGGRRGRNEALTLR+RVRGRR GILRSFRGANDRPRR++RV SGGXXXXXX DGARPEVL
Sbjct:    1 MIFGATHAASAAIPVAAGGTGRLLHSYGCXXXXXXXXXXXXXXXXXXXXXXXX----------------------------------------------------XXXXXXXXXTVSSRLQDVVSQLQGELRAGTTPQVRSSIKLDSLFADLRGQEDTSRGRNSKTPTTTGPKTIPPK-SPKQPRRLPSGKFCAAGSGDAALQETDDLESLSNMLDRVQASAKARDLAEAEARSLELRSGGPIGDDPARSWVTIGNQRDMKTRFRNIREGRVGWAVLPLVMKAKQAGIPLSTGVYNAAIAAYSGTPRKYEDALRVLNMLRREEDPGVRPDLGSYNAAMWVCSEAGQWRLVMELMTQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLVEAAGMGSAAPRKHMIEVVHEMEQAGVEPNSYTFTTLLNCLARRRKIFDGFQVMARLVDARAPLLPHGHRAGLQFCDAYGDWRRAMILMEDMRVAKRRPSGPMYLLAVKACAKGAQWERALSLMVERRALDVREEKEANEKNGGKPLQRQKMEAAAKAKKQAARTHMKTLEVVLSAVSEAGQFEVAMRLVQQMRAAGGTPSKKCYLYTLRAASKWGRWDVIESLMKDMRALRVGVVAEKETDAMDDGVVVNNGEGKGGGGEQHRPRMLSSDCYAPLVEAYAQASMWERAIEAYQEGFVVGREGGEAGPVKYRVFECVLKACVEVSDGRTALEVIGRQAAEPKALQKLSSAITTEGEGKGTELSGGPPDRRCWCLAAEALGRAGMIQEGHRVLMAMVDSGIPLRESTKTDVPSLMPLPTTGGGGFEWDXXXXXXXXXXXXXXXXXXXXXXPGLPPPAAMAEMQEAVVRERLGLFSSREDGTGGGSALTGGPRESRNAVQVSKSYLSGMEFPKGVVNGEGCTAAAVAAATNGGEKTLGMGWLLANDLASEKSEMERDVQEGGLERKRRRMREFSLKRREQQKKLERICTTGAGYRSGRLNGGLPVGKADDAGVGVTAGLDLRPGGRRGRNEALTLRMRVRGRRMGILRSFRGANDRPRRKERVESGGXXXXXXGDGARPEVL 1034

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BLAST of mRNA_E-siliculosus-1a_F_contig1335.2024.1 vs. uniprot
Match: A0A6H5L472_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L472_9PHAE)

HSP 1 Score: 1018 bits (2633), Expect = 0.000e+0
Identity = 609/664 (91.72%), Postives = 624/664 (93.98%), Query Frame = 0

Query:   46 MIFGATHAASAVIPVAAGGTGRLLHSYGCCCAGRRRSTTVRPWAQGVSALYSVGHGNGKQVASTDSSSRSSSGDRSHTKRRQQLRDKQTSLLGEKEEAPAGQWEXXXXXXXXXXTVSSRLQDVVSQLQGELRAGATPQVRSSIKLDGLFADLRGREDTSQGCNSKTPTTTGPKTIPLKKSPKQPRRLPSGKCSAAESGDAALEGTDDLESLSDMLDRVQASAKARDLAEAEARSLALRSGGPIGDDPARSWVTIGNQRDMKTRFRNIQEGRVGWAVLPLVMKAKQAGIPLSTGVYNAAIAAYAGTPRKYGDALRVLNMLRREEAPGVRPDLGSYNAAMWVCSEAGQWRLVMELMTQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLVEAAGMGSAAPRKHMIEVVHEMEQAGVEPNSYTFTTLLNCLARRRKTFDGFQARLRLVDARAPLLPHGHRAGLQFCDAYGDWRRAMILMEDMRVAKRRPSAPMYLLAVKACAKGGQWERALSLMVERRALDVREEKEANEKNGGKPLQRKKMEAAAKAKKQAARTHMKTLEVVLSAVSEAGQFEVAMRLVQQMRAAGGTPSKKCYLYTLRAASKWGRWDVIESLMKDMRALRVGVVAEKEIDAMDDGVVVNNGEGKG 709
            MIFGATHAASA IPVA GGTGRLLHSYGCCCAGRRRSTTVRPWAQG+SALYSVGHG+GKQVASTDSSSR+SSGD SH +RRQQLRDKQTSLLGEKEEAPAGQWEXXXXXXX   TVSSRLQDVVSQLQGELRAG+TPQVRSSIKLDGLFADLRG+EDT +G NS T TTTGP TIP K SPKQ RRLP+GK SAA SGDAALEGTDDLESLSDMLDRVQASAKARDLAEAEARSLALRSGGPIGDDP RSWVTIGNQRD+KTRFRNI+EGRVGWAVLPLVMKAKQAGIPLSTGVYNAAIAAYAGTPRKY DALRVLNMLRREE PGVRPDLGSYNAAMWVCSEAGQWRLVMELMTQ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLVEAAGMGSAAPRKHMIEVVHEMEQAGVEPNSYTFTTLL CLARRRKTFDGFQARL  VDARAPLLPHGHRAGLQFCDAYGDWRRAMILMEDMRVAKRRPSAPMYLLAVKACAKG          VERRALDVREEKE +EKNGGKPL+RKK+EA AKAKKQAARTHMKTLEVVLSAVSEAGQFEVAMRLVQQMRAAGGTPSKKCYLYTLRAASKWGRWDVIESLMKDMRALRVGVVA+KE + MD GVVV NGEGKG
Sbjct:    1 MIFGATHAASAAIPVAVGGTGRLLHSYGCCCAGRRRSTTVRPWAQGISALYSVGHGSGKQVASTDSSSRNSSGDCSHAQRRQQLRDKQTSLLGEKEEAPAGQWEXXXXXXXS--TVSSRLQDVVSQLQGELRAGSTPQVRSSIKLDGLFADLRGQEDTPRGRNSTTTTTTGPNTIPPK-SPKQQRRLPNGKLSAAGSGDAALEGTDDLESLSDMLDRVQASAKARDLAEAEARSLALRSGGPIGDDPVRSWVTIGNQRDIKTRFRNIREGRVGWAVLPLVMKAKQAGIPLSTGVYNAAIAAYAGTPRKYEDALRVLNMLRREEDPGVRPDLGSYNAAMWVCSEAGQWRLVMELMTQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLVEAAGMGSAAPRKHMIEVVHEMEQAGVEPNSYTFTTLLICLARRRKTFDGFQARL--VDARAPLLPHGHRAGLQFCDAYGDWRRAMILMEDMRVAKRRPSAPMYLLAVKACAKGXXXXXXXXXXVERRALDVREEKEMDEKNGGKPLKRKKVEAVAKAKKQAARTHMKTLEVVLSAVSEAGQFEVAMRLVQQMRAAGGTPSKKCYLYTLRAASKWGRWDVIESLMKDMRALRVGVVADKETNTMDGGVVVINGEGKG 659

[Close]

BLAST of mRNA_E-siliculosus-1a_F_contig1335.2024.1 vs. uniprot
Match: A0A6H5L7D9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7D9_9PHAE)

HSP 1 Score: 676 bits (1743), Expect = 1.750e-232
Identity = 370/391 (94.63%), Postives = 380/391 (97.19%), Query Frame = 0

Query:  719 MLSSDCYAPLVEAYAQASMWERAIEAYQEGFVVGREGGEAGPVKYRVYECVLKACVEVSDGRTALDVIGRQAAEPKALQKLSSAIASEGGGKGAELSGGPPDRRCWCLAAEALGRAGMIKEGHRVLMAMVDSGIPLRESTKTDVPSLMPVPTTAGGGFDWNQRXXXXXXXXXXXXXXXXXXGDPGLPPPAAMAEMQEAVVRERLGLFSSWEDGRGGGSAVTGGPRESRNAVQVSKSYLSGVEFPKGVVNGEGCTAAAVAAATNSGEKTLGMGWLLANDLTSEKSEMERDVQEGGLERKRRRMREFSLKRREQQKKLERIRTAGAGDRSGRINGGLPVGKADDAGMGVAAGLDLRPGGRRGRNEALTLRIRVRGRRTGILRSFRGANDRPRR 1109
            MLSSDCYAPLVEAYAQASMWERAIEAYQEGFVVGREGGEAGPVKYRVYECVLKACVEVSDGRTAL+VIGRQAAEPKALQK+SS I +EG GKGAELSGGPPDRRCWCLAAEALGRAGMI EGHRVLMAMVDSGIPLRESTKTDVPSLMPVPTTAGGGF+WNQ XXXXXXXXXXXXXXXXXX  PGLPPPAA+AEMQEAVVRERLGLFSSWEDGRGGGSAVTGGPRESRNAVQVSK+YLSGVEFPKGVVNGEGCTAAAVAAAT SGEKTLGMGWLLANDLTSEKSEMER VQEGGLERKRRRMREFSLKRREQQKKL+RIRT GAGDRSGRINGGLPVGKADDAG+GVAAGLDLRPGGRRGRNEALTLR+RVRG+R GILRSFRGANDRPRR
Sbjct:    1 MLSSDCYAPLVEAYAQASMWERAIEAYQEGFVVGREGGEAGPVKYRVYECVLKACVEVSDGRTALEVIGRQAAEPKALQKMSSTITTEGEGKGAELSGGPPDRRCWCLAAEALGRAGMINEGHRVLMAMVDSGIPLRESTKTDVPSLMPVPTTAGGGFEWNQXXXXXXXXXXXXXXXXXXXXXPGLPPPAAVAEMQEAVVRERLGLFSSWEDGRGGGSAVTGGPRESRNAVQVSKNYLSGVEFPKGVVNGEGCTAAAVAAATKSGEKTLGMGWLLANDLTSEKSEMERGVQEGGLERKRRRMREFSLKRREQQKKLQRIRTTGAGDRSGRINGGLPVGKADDAGVGVAAGLDLRPGGRRGRNEALTLRMRVRGKRMGILRSFRGANDRPRR 391

The following BLAST results are available for this feature:

BLAST of mRNA_E-siliculosus-1a_F_contig1335.2024.1 vs. uniprot

BLAST of mRNA_E-siliculosus-1a_F_contig1335.2024.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
D7FLV0_ECTSI	0.000e+0	87.30	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5L472_9PHAE	0.000e+0	91.72	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
A0A6H5L7D9_9PHAE	1.750e-232	94.63	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 1013..1033
None	No IPR available	PANTHER	PTHR46128	FAMILY NOT NAMED	coord: 467..575 coord: 333..495 coord: 618..851
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 15..22
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 3..14
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..2
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..22
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 23..1131
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 413..446 e-value: 2.0E-5 score: 22.5
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 409..454 e-value: 2.0E-8 score: 34.3
IPR002885	Pentatricopeptide repeat	PFAM	PF13812	PPR_3	coord: 470..498 e-value: 0.0057 score: 16.7
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 445..481 score: 8.342
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 618..652 score: 8.561
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 336..371 score: 6.555
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 820..854 score: 8.276
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 410..444 score: 10.808
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 552..586 score: 6.862
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 375..409 score: 9.613
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 482..516 score: 6.39
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 653..687 score: 5.689
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 721..755 score: 6.16
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10		coord: 319..456 e-value: 1.9E-24 score: 88.0 coord: 713..862 e-value: 1.7E-5 score: 26.2

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E-siliculosus-1a_F_contig1335	contig	E-siliculosus-1a_F_contig1335:5539..13884 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female	2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90	2022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_E-siliculosus-1a_F_contig1335.2024.1	mRNA_E-siliculosus-1a_F_contig1335.2024.1	Ectocarpus siliculosus Ec863f_EcPH12_90f female	mRNA	E-siliculosus-1a_F_contig1335 5539..13884 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_E-siliculosus-1a_F_contig1335.2024.1 ID=prot_E-siliculosus-1a_F_contig1335.2024.1|Name=mRNA_E-siliculosus-1a_F_contig1335.2024.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=1132bp
MRLAHGAALALSVSRIATPVSTLSSIAQPHAQTTAAAATGQSGTSMIFGA
THAASAVIPVAAGGTGRLLHSYGCCCAGRRRSTTVRPWAQGVSALYSVGH
GNGKQVASTDSSSRSSSGDRSHTKRRQQLRDKQTSLLGEKEEAPAGQWEE
EEEEEEDSSTVSSRLQDVVSQLQGELRAGATPQVRSSIKLDGLFADLRGR
EDTSQGCNSKTPTTTGPKTIPLKKSPKQPRRLPSGKCSAAESGDAALEGT
DDLESLSDMLDRVQASAKARDLAEAEARSLALRSGGPIGDDPARSWVTIG
NQRDMKTRFRNIQEGRVGWAVLPLVMKAKQAGIPLSTGVYNAAIAAYAGT
PRKYGDALRVLNMLRREEAPGVRPDLGSYNAAMWVCSEAGQWRLVMELMT
QAREEGIEPDTTSYNNAMRGMAIQKQWRRARKLLKRMVSEGLSPDVRTYN
GLVEAAGMGSAAPRKHMIEVVHEMEQAGVEPNSYTFTTLLNCLARRRKTF
DGFQARLRLVDARAPLLPHGHRAGLQFCDAYGDWRRAMILMEDMRVAKRR
PSAPMYLLAVKACAKGGQWERALSLMVERRALDVREEKEANEKNGGKPLQ
RKKMEAAAKAKKQAARTHMKTLEVVLSAVSEAGQFEVAMRLVQQMRAAGG
TPSKKCYLYTLRAASKWGRWDVIESLMKDMRALRVGVVAEKEIDAMDDGV
VVNNGEGKGAGGEQHRPRMLSSDCYAPLVEAYAQASMWERAIEAYQEGFV
VGREGGEAGPVKYRVYECVLKACVEVSDGRTALDVIGRQAAEPKALQKLS
SAIASEGGGKGAELSGGPPDRRCWCLAAEALGRAGMIKEGHRVLMAMVDS
GIPLRESTKTDVPSLMPVPTTAGGGFDWNQRRRRRRPRGRRRRRRHQQQG
DPGLPPPAAMAEMQEAVVRERLGLFSSWEDGRGGGSAVTGGPRESRNAVQ
VSKSYLSGVEFPKGVVNGEGCTAAAVAAATNSGEKTLGMGWLLANDLTSE
KSEMERDVQEGGLERKRRRMREFSLKRREQQKKLERIRTAGAGDRSGRIN
GGLPVGKADDAGMGVAAGLDLRPGGRRGRNEALTLRIRVRGRRTGILRSF
RGANDRPRRQDRVRSGGGGGGSGDGARPEVL*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf
IPR002885	Pentatricopeptide_repeat