mRNA_E-siliculosus-1a_F_contig1335.2024.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1335.2024.1 vs. uniprot
Match: D7FLV0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLV0_ECTSI) HSP 1 Score: 1592 bits (4123), Expect = 0.000e+0 Identity = 949/1087 (87.30%), Postives = 970/1087 (89.24%), Query Frame = 1
Query: 136 MIFGATHAASAVIPVAAGGTGRLLHSYGCCCAGRRRSTTVRPWAQGVSALYSVGHGNGKQVASTDSSSRSSSGDRSHTKRRQQLRDKQTSLLGEKEEAPAGQWEXXXXXXXXXXTVSSRLQDVVSQLQGELRAGATPQVRSSIKLDGLFADLRGREDTSQGCNSKTPTTTGPKTIPLKKSPKQPRRLPSGKCSAAESGDAALEGTDDLESLSDMLDRVQASAKARDLAEAEARSLALRSGGPIGDDPARSWVTIGNQRDMKTRFRNIQEGRVGWAVLPLVMKAKQAGIPLSTGVYNAAIAAYAGTPRKYGDALRVLNMLRREEAPGVRPDLGSYNAAMWVCSEAGQWRLVMELMTQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLVEAAGMGSAAPRKHMIEVVHEMEQAGVEPNSYTFTTLLNCLARRRKTFDGFQARLRLVDARAPLLPHGHRAGLQFCDAYGDWRRAMILMEDMRVAKRRPSAPMYLLAVKACAKGGQWERALSLMVERRALDVREEKEANEKNGGKPLQRKKMEAAAKAKKQAARTHMKTLEVVLSAVSEAGQFEVAMRLVQQMRAAGGTPSKKCYLYTLRAASKWGRWDVIESLMKDMRALRVGVVAEKEIDAMDDGVVVNNGEGKGAGGEQHRPRMLSSDCYAPLVEAYAQASMWERAIEAYQEGFVVGREGGEAGPVKYRVYECVLKACVEVSDGRTALDVIGRQAAEPKALQKLSSAIASEGGGKGAELSGGPPDRRCWCLAAEALGRAGMIKEGHRVLMAMVDSGIPLRESTKTDVPSLMPVPTTAGGGFDWNQRXXXXXXXXXXXXXXXXXXGDPGLPPPAAMAEMQEAVVRERLGLFSSWEDGRGGGSAVTGGPRESRNAVQVSKSYLSGVEFPKGVVNGEGCTAAAVAAATNSGEKTLGMGWLLANDLTSEKSEMERDVQEGGLERKRRRMREFSLKRREQQKKLERIRTAGAGDRSGRINGGLPVGKADDAGMGVAAGLDLRPGGRRGRNEALTLRIRVRGRRTGILRSFRGANDRPRRQDRVRSGGXXXXXX-DGARPEVL 3393
MIFGATHAASA IPVAAGGTGRLLHSYGC XXXXXXXXXTVSSRLQDVVSQLQGELRAG TPQVRSSIKLD LFADLRG+EDTS+G NSKTPTTTGPKTIP K SPKQPRRLPSGK AA SGDAAL+ TDDLESLS+MLDRVQASAKARDLAEAEARSL LRSGGPIGDDPARSWVTIGNQRDMKTRFRNI+EGRVGWAVLPLVMKAKQAGIPLSTGVYNAAIAAY+GTPRKY DALRVLNMLRREE PGVRPDLGSYNAAMWVCSEAGQWRLVMELMTQ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLVEAAGMGSAAPRKHMIEVVHEMEQAGVEPNSYTFTTLLNCLARRRK FDGFQ RLVDARAPLLPHGHRAGLQFCDAYGDWRRAMILMEDMRVAKRRPS PMYLLAVKACAKG QWERALSLMVERRALDVREEKEANEKNGGKPLQR+KMEAAAKAKKQAARTHMKTLEVVLSAVSEAGQFEVAMRLVQQMRAAGGTPSKKCYLYTLRAASKWGRWDVIESLMKDMRALRVGVVAEKE DAMDDGVVVNNGEGKG GGEQHRPRMLSSDCYAPLVEAYAQASMWERAIEAYQEGFVVGREGGEAGPVKYRV+ECVLKACVEVSDGRTAL+VIGRQAAEPKALQKLSSAI +EG GKG ELSGGPPDRRCWCLAAEALGRAGMI+EGHRVLMAMVDSGIPLRESTKTDVPSLMP+PTT GGGF+W+ XXXXXXXXXXXXXXXXXX PGLPPPAAMAEMQEAVVRERLGLFSS EDG GGGSA+TGGPRESRNAVQVSKSYLSG+EFPKGVVNGEGCTAAAVAAATN GEKTLGMGWLLANDL SEKSEMERDVQEGGLERKRRRMREFSLKRREQQKKLERI T GAG RSGR+NGGLPVGKADDAG+GV AGLDLRPGGRRGRNEALTLR+RVRGRR GILRSFRGANDRPRR++RV SGGXXXXXX DGARPEVL
Sbjct: 1 MIFGATHAASAAIPVAAGGTGRLLHSYGCXXXXXXXXXXXXXXXXXXXXXXXX----------------------------------------------------XXXXXXXXXTVSSRLQDVVSQLQGELRAGTTPQVRSSIKLDSLFADLRGQEDTSRGRNSKTPTTTGPKTIPPK-SPKQPRRLPSGKFCAAGSGDAALQETDDLESLSNMLDRVQASAKARDLAEAEARSLELRSGGPIGDDPARSWVTIGNQRDMKTRFRNIREGRVGWAVLPLVMKAKQAGIPLSTGVYNAAIAAYSGTPRKYEDALRVLNMLRREEDPGVRPDLGSYNAAMWVCSEAGQWRLVMELMTQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLVEAAGMGSAAPRKHMIEVVHEMEQAGVEPNSYTFTTLLNCLARRRKIFDGFQVMARLVDARAPLLPHGHRAGLQFCDAYGDWRRAMILMEDMRVAKRRPSGPMYLLAVKACAKGAQWERALSLMVERRALDVREEKEANEKNGGKPLQRQKMEAAAKAKKQAARTHMKTLEVVLSAVSEAGQFEVAMRLVQQMRAAGGTPSKKCYLYTLRAASKWGRWDVIESLMKDMRALRVGVVAEKETDAMDDGVVVNNGEGKGGGGEQHRPRMLSSDCYAPLVEAYAQASMWERAIEAYQEGFVVGREGGEAGPVKYRVFECVLKACVEVSDGRTALEVIGRQAAEPKALQKLSSAITTEGEGKGTELSGGPPDRRCWCLAAEALGRAGMIQEGHRVLMAMVDSGIPLRESTKTDVPSLMPLPTTGGGGFEWDXXXXXXXXXXXXXXXXXXXXXXPGLPPPAAMAEMQEAVVRERLGLFSSREDGTGGGSALTGGPRESRNAVQVSKSYLSGMEFPKGVVNGEGCTAAAVAAATNGGEKTLGMGWLLANDLASEKSEMERDVQEGGLERKRRRMREFSLKRREQQKKLERICTTGAGYRSGRLNGGLPVGKADDAGVGVTAGLDLRPGGRRGRNEALTLRMRVRGRRMGILRSFRGANDRPRRKERVESGGXXXXXXGDGARPEVL 1034
BLAST of mRNA_E-siliculosus-1a_F_contig1335.2024.1 vs. uniprot
Match: A0A6H5L472_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L472_9PHAE) HSP 1 Score: 1018 bits (2633), Expect = 0.000e+0 Identity = 609/664 (91.72%), Postives = 624/664 (93.98%), Query Frame = 1
Query: 136 MIFGATHAASAVIPVAAGGTGRLLHSYGCCCAGRRRSTTVRPWAQGVSALYSVGHGNGKQVASTDSSSRSSSGDRSHTKRRQQLRDKQTSLLGEKEEAPAGQWEXXXXXXXXXXTVSSRLQDVVSQLQGELRAGATPQVRSSIKLDGLFADLRGREDTSQGCNSKTPTTTGPKTIPLKKSPKQPRRLPSGKCSAAESGDAALEGTDDLESLSDMLDRVQASAKARDLAEAEARSLALRSGGPIGDDPARSWVTIGNQRDMKTRFRNIQEGRVGWAVLPLVMKAKQAGIPLSTGVYNAAIAAYAGTPRKYGDALRVLNMLRREEAPGVRPDLGSYNAAMWVCSEAGQWRLVMELMTQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLVEAAGMGSAAPRKHMIEVVHEMEQAGVEPNSYTFTTLLNCLARRRKTFDGFQARLRLVDARAPLLPHGHRAGLQFCDAYGDWRRAMILMEDMRVAKRRPSAPMYLLAVKACAKGGQWERALSLMVERRALDVREEKEANEKNGGKPLQRKKMEAAAKAKKQAARTHMKTLEVVLSAVSEAGQFEVAMRLVQQMRAAGGTPSKKCYLYTLRAASKWGRWDVIESLMKDMRALRVGVVAEKEIDAMDDGVVVNNGEGKG 2127
MIFGATHAASA IPVA GGTGRLLHSYGCCCAGRRRSTTVRPWAQG+SALYSVGHG+GKQVASTDSSSR+SSGD SH +RRQQLRDKQTSLLGEKEEAPAGQWEXXXXXXX TVSSRLQDVVSQLQGELRAG+TPQVRSSIKLDGLFADLRG+EDT +G NS T TTTGP TIP K SPKQ RRLP+GK SAA SGDAALEGTDDLESLSDMLDRVQASAKARDLAEAEARSLALRSGGPIGDDP RSWVTIGNQRD+KTRFRNI+EGRVGWAVLPLVMKAKQAGIPLSTGVYNAAIAAYAGTPRKY DALRVLNMLRREE PGVRPDLGSYNAAMWVCSEAGQWRLVMELMTQ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLVEAAGMGSAAPRKHMIEVVHEMEQAGVEPNSYTFTTLL CLARRRKTFDGFQARL VDARAPLLPHGHRAGLQFCDAYGDWRRAMILMEDMRVAKRRPSAPMYLLAVKACAKG VERRALDVREEKE +EKNGGKPL+RKK+EA AKAKKQAARTHMKTLEVVLSAVSEAGQFEVAMRLVQQMRAAGGTPSKKCYLYTLRAASKWGRWDVIESLMKDMRALRVGVVA+KE + MD GVVV NGEGKG
Sbjct: 1 MIFGATHAASAAIPVAVGGTGRLLHSYGCCCAGRRRSTTVRPWAQGISALYSVGHGSGKQVASTDSSSRNSSGDCSHAQRRQQLRDKQTSLLGEKEEAPAGQWEXXXXXXXS--TVSSRLQDVVSQLQGELRAGSTPQVRSSIKLDGLFADLRGQEDTPRGRNSTTTTTTGPNTIPPK-SPKQQRRLPNGKLSAAGSGDAALEGTDDLESLSDMLDRVQASAKARDLAEAEARSLALRSGGPIGDDPVRSWVTIGNQRDIKTRFRNIREGRVGWAVLPLVMKAKQAGIPLSTGVYNAAIAAYAGTPRKYEDALRVLNMLRREEDPGVRPDLGSYNAAMWVCSEAGQWRLVMELMTQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLVEAAGMGSAAPRKHMIEVVHEMEQAGVEPNSYTFTTLLICLARRRKTFDGFQARL--VDARAPLLPHGHRAGLQFCDAYGDWRRAMILMEDMRVAKRRPSAPMYLLAVKACAKGXXXXXXXXXXVERRALDVREEKEMDEKNGGKPLKRKKVEAVAKAKKQAARTHMKTLEVVLSAVSEAGQFEVAMRLVQQMRAAGGTPSKKCYLYTLRAASKWGRWDVIESLMKDMRALRVGVVADKETNTMDGGVVVINGEGKG 659
BLAST of mRNA_E-siliculosus-1a_F_contig1335.2024.1 vs. uniprot
Match: A0A6H5L7D9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7D9_9PHAE) HSP 1 Score: 676 bits (1743), Expect = 1.750e-232 Identity = 370/391 (94.63%), Postives = 380/391 (97.19%), Query Frame = 1
Query: 2155 MLSSDCYAPLVEAYAQASMWERAIEAYQEGFVVGREGGEAGPVKYRVYECVLKACVEVSDGRTALDVIGRQAAEPKALQKLSSAIASEGGGKGAELSGGPPDRRCWCLAAEALGRAGMIKEGHRVLMAMVDSGIPLRESTKTDVPSLMPVPTTAGGGFDWNQRXXXXXXXXXXXXXXXXXXGDPGLPPPAAMAEMQEAVVRERLGLFSSWEDGRGGGSAVTGGPRESRNAVQVSKSYLSGVEFPKGVVNGEGCTAAAVAAATNSGEKTLGMGWLLANDLTSEKSEMERDVQEGGLERKRRRMREFSLKRREQQKKLERIRTAGAGDRSGRINGGLPVGKADDAGMGVAAGLDLRPGGRRGRNEALTLRIRVRGRRTGILRSFRGANDRPRR 3327
MLSSDCYAPLVEAYAQASMWERAIEAYQEGFVVGREGGEAGPVKYRVYECVLKACVEVSDGRTAL+VIGRQAAEPKALQK+SS I +EG GKGAELSGGPPDRRCWCLAAEALGRAGMI EGHRVLMAMVDSGIPLRESTKTDVPSLMPVPTTAGGGF+WNQ XXXXXXXXXXXXXXXXXX PGLPPPAA+AEMQEAVVRERLGLFSSWEDGRGGGSAVTGGPRESRNAVQVSK+YLSGVEFPKGVVNGEGCTAAAVAAAT SGEKTLGMGWLLANDLTSEKSEMER VQEGGLERKRRRMREFSLKRREQQKKL+RIRT GAGDRSGRINGGLPVGKADDAG+GVAAGLDLRPGGRRGRNEALTLR+RVRG+R GILRSFRGANDRPRR
Sbjct: 1 MLSSDCYAPLVEAYAQASMWERAIEAYQEGFVVGREGGEAGPVKYRVYECVLKACVEVSDGRTALEVIGRQAAEPKALQKMSSTITTEGEGKGAELSGGPPDRRCWCLAAEALGRAGMINEGHRVLMAMVDSGIPLRESTKTDVPSLMPVPTTAGGGFEWNQXXXXXXXXXXXXXXXXXXXXXPGLPPPAAVAEMQEAVVRERLGLFSSWEDGRGGGSAVTGGPRESRNAVQVSKNYLSGVEFPKGVVNGEGCTAAAVAAATKSGEKTLGMGWLLANDLTSEKSEMERGVQEGGLERKRRRMREFSLKRREQQKKLQRIRTTGAGDRSGRINGGLPVGKADDAGVGVAAGLDLRPGGRRGRNEALTLRMRVRGKRMGILRSFRGANDRPRR 391 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1335.2024.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1335.2024.1 >prot_E-siliculosus-1a_F_contig1335.2024.1 ID=prot_E-siliculosus-1a_F_contig1335.2024.1|Name=mRNA_E-siliculosus-1a_F_contig1335.2024.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=1132bp MRLAHGAALALSVSRIATPVSTLSSIAQPHAQTTAAAATGQSGTSMIFGAback to top mRNA from alignment at E-siliculosus-1a_F_contig1335:5539..13884- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1335.2024.1 ID=mRNA_E-siliculosus-1a_F_contig1335.2024.1|Name=mRNA_E-siliculosus-1a_F_contig1335.2024.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=8346bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1335:5539..13884- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1335:5539..13884- >mRNA_E-siliculosus-1a_F_contig1335.2024.1 ID=mRNA_E-siliculosus-1a_F_contig1335.2024.1|Name=mRNA_E-siliculosus-1a_F_contig1335.2024.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=6792bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1335:5539..13884- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |