prot_E-siliculosus-1a_F_contig1310.1894.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig1310.1894.1
Unique Nameprot_E-siliculosus-1a_F_contig1310.1894.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length121
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1310.1894.1 vs. uniprot
Match: D7FHS0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHS0_ECTSI)

HSP 1 Score: 149 bits (376), Expect = 7.190e-42
Identity = 83/132 (62.88%), Postives = 99/132 (75.00%), Query Frame = 0 
Query:    1 VLLACSVCFQLLAVCLAASLFVHL------HGRHGFHGLLLGPTFAHASGAILIALVEMNLLRMSHPESRGSGPQQQPPFY-----RRSRPKNQFWVIFGIGSLIMAFDVTTLVNSSVGDSSLLGPGVQSIP 121
            VLLACSV FQL+A CLAAS++VHL      H   GF  +LLGPTF  A GAIL+ALVE++LLR+SHPESRG+GP Q+PPFY      R+ PK++FWV+ GIGSLI+ FDVTTLVN  V  S L  PG+QSIP
Sbjct:  127 VLLACSVFFQLVAACLAASVYVHLRIHRPYHDGSGFPAMLLGPTFVLAWGAILVALVEISLLRISHPESRGTGPHQEPPFYLRHIYTRNHPKSRFWVLLGIGSLIVVFDVTTLVNY-VDASGLSSPGLQSIP 257
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BLAST of mRNA_E-siliculosus-1a_F_contig1310.1894.1 vs. uniprot
Match: A0A6H5K3M8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3M8_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 2.260e-36
Identity = 77/131 (58.78%), Postives = 92/131 (70.23%), Query Frame = 0 
Query:    1 VLLACSVCFQLLAVCLAASLFVHLH-------GR---------------HGFHGLLLGPTFAHASGAILIALVEMNLLRMSHPESRGSGPQQQPPF-----YRRSRPKNQFWVIFGIGSLIMAFDVTTLVN 104
            VLLACSV FQL+A CLAAS++VHL        GR                GF  +LLGPTFA A G+ LIALVE++LLR+SHPESRG+GP Q+PPF     Y R+ PK++FWV+FGIGSLI+AFDVTTLVN
Sbjct:   48 VLLACSVFFQLVAACLAASVYVHLKIHIPYHDGRTSVRVASPTPTAYTGSGFPAMLLGPTFALAWGSTLIALVEISLLRISHPESRGTGPHQEPPFHLRNIYNRNHPKSRFWVLFGIGSLIVAFDVTTLVN 178
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BLAST of mRNA_E-siliculosus-1a_F_contig1310.1894.1 vs. uniprot
Match: D8LH50_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH50_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 6.730e-17
Identity = 43/77 (55.84%), Postives = 57/77 (74.03%), Query Frame = 0 
Query:   48 IALVEMNLLRMSHPESRGSGPQQQPPFY-----RRSRPKNQFWVIFGIGSLIMAFDVTTLVNSSVGDSSLLGPGVQS 119
            +ALVE+ LLR+SHPESRG+GPQQ+PPFY      R+ PK++  V+FGIGSL++A +VTT+VN + G      PGV S
Sbjct:    1 MALVEIFLLRISHPESRGNGPQQEPPFYLRHIYTRNHPKSRVLVVFGIGSLVVASEVTTVVNYADG------PGVMS 71
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1310.1894.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FHS0_ECTSI7.190e-4262.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K3M8_9PHAE2.260e-3658.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LH50_ECTSI6.730e-1755.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 18..32
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 57..83
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 2..12
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..1
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 104..121
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 84..103
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..17
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 33..56
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 13..17
NoneNo IPR availableSIGNALP_EUKSignalP-TMSignalP-TMcoord: 1..17
score: 0.619
NoneNo IPR availableTMHMMTMhelixcoord: 84..103
NoneNo IPR availableTMHMMTMhelixcoord: 29..51
NoneNo IPR availableTMHMMTMhelixcoord: 2..24

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1310contigE-siliculosus-1a_F_contig1310:21962..23293 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1310.1894.1mRNA_E-siliculosus-1a_F_contig1310.1894.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig1310 21962..23294 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig1310.1894.1 ID=prot_E-siliculosus-1a_F_contig1310.1894.1|Name=mRNA_E-siliculosus-1a_F_contig1310.1894.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=121bp
VLLACSVCFQLLAVCLAASLFVHLHGRHGFHGLLLGPTFAHASGAILIAL
VEMNLLRMSHPESRGSGPQQQPPFYRRSRPKNQFWVIFGIGSLIMAFDVT
TLVNSSVGDSSLLGPGVQSIP
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