mRNA_E-siliculosus-1a_F_contig1310.1894.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1310.1894.1
Unique NamemRNA_E-siliculosus-1a_F_contig1310.1894.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1310.1894.1 vs. uniprot
Match: D7FHS0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHS0_ECTSI)

HSP 1 Score: 149 bits (376), Expect = 7.190e-42
Identity = 83/132 (62.88%), Postives = 99/132 (75.00%), Query Frame = 1 
Query:    1 VLLACSVCFQLLAVCLAASLFVHL------HGRHGFHGLLLGPTFAHASGAILIALVEMNLLRMSHPESRGSGPQQQPPFY-----RRSRPKNQFWVIFGIGSLIMAFDVTTLVNSSVGDSSLLGPGVQSIP 363
            VLLACSV FQL+A CLAAS++VHL      H   GF  +LLGPTF  A GAIL+ALVE++LLR+SHPESRG+GP Q+PPFY      R+ PK++FWV+ GIGSLI+ FDVTTLVN  V  S L  PG+QSIP
Sbjct:  127 VLLACSVFFQLVAACLAASVYVHLRIHRPYHDGSGFPAMLLGPTFVLAWGAILVALVEISLLRISHPESRGTGPHQEPPFYLRHIYTRNHPKSRFWVLLGIGSLIVVFDVTTLVNY-VDASGLSSPGLQSIP 257
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BLAST of mRNA_E-siliculosus-1a_F_contig1310.1894.1 vs. uniprot
Match: A0A6H5K3M8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3M8_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 2.260e-36
Identity = 77/131 (58.78%), Postives = 92/131 (70.23%), Query Frame = 1 
Query:    1 VLLACSVCFQLLAVCLAASLFVHLH-------GR---------------HGFHGLLLGPTFAHASGAILIALVEMNLLRMSHPESRGSGPQQQPPF-----YRRSRPKNQFWVIFGIGSLIMAFDVTTLVN 312
            VLLACSV FQL+A CLAAS++VHL        GR                GF  +LLGPTFA A G+ LIALVE++LLR+SHPESRG+GP Q+PPF     Y R+ PK++FWV+FGIGSLI+AFDVTTLVN
Sbjct:   48 VLLACSVFFQLVAACLAASVYVHLKIHIPYHDGRTSVRVASPTPTAYTGSGFPAMLLGPTFALAWGSTLIALVEISLLRISHPESRGTGPHQEPPFHLRNIYNRNHPKSRFWVLFGIGSLIVAFDVTTLVN 178
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BLAST of mRNA_E-siliculosus-1a_F_contig1310.1894.1 vs. uniprot
Match: D8LH50_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH50_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 6.730e-17
Identity = 43/77 (55.84%), Postives = 57/77 (74.03%), Query Frame = 1 
Query:  142 IALVEMNLLRMSHPESRGSGPQQQPPFY-----RRSRPKNQFWVIFGIGSLIMAFDVTTLVNSSVGDSSLLGPGVQS 357
            +ALVE+ LLR+SHPESRG+GPQQ+PPFY      R+ PK++  V+FGIGSL++A +VTT+VN + G      PGV S
Sbjct:    1 MALVEIFLLRISHPESRGNGPQQEPPFYLRHIYTRNHPKSRVLVVFGIGSLVVASEVTTVVNYADG------PGVMS 71
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1310.1894.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FHS0_ECTSI7.190e-4262.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K3M8_9PHAE2.260e-3658.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LH50_ECTSI6.730e-1755.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1310contigE-siliculosus-1a_F_contig1310:21962..23294 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size363
Model size365
Exons3
Hectar predicted targeting categorysignal peptide
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1310.1894.1prot_E-siliculosus-1a_F_contig1310.1894.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1310 21962..23293 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927833.8453975-CDS-E-siliculosus-1a_F_contig1310:21961..220551622927833.8453975-CDS-E-siliculosus-1a_F_contig1310:21961..22055Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1310 21962..22055 +
1696318699.8721254-CDS-E-siliculosus-1a_F_contig1310:21961..220551696318699.8721254-CDS-E-siliculosus-1a_F_contig1310:21961..22055Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1310 21962..22055 +
1622927833.8627632-CDS-E-siliculosus-1a_F_contig1310:22371..226171622927833.8627632-CDS-E-siliculosus-1a_F_contig1310:22371..22617Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1310 22372..22617 +
1696318699.8809779-CDS-E-siliculosus-1a_F_contig1310:22371..226171696318699.8809779-CDS-E-siliculosus-1a_F_contig1310:22371..22617Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1310 22372..22617 +
1622927833.873447-CDS-E-siliculosus-1a_F_contig1310:23270..232931622927833.873447-CDS-E-siliculosus-1a_F_contig1310:23270..23293Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1310 23271..23293 +
1696318699.89179-CDS-E-siliculosus-1a_F_contig1310:23270..232931696318699.89179-CDS-E-siliculosus-1a_F_contig1310:23270..23293Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1310 23271..23293 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1310.1894.1

>prot_E-siliculosus-1a_F_contig1310.1894.1 ID=prot_E-siliculosus-1a_F_contig1310.1894.1|Name=mRNA_E-siliculosus-1a_F_contig1310.1894.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=121bp
VLLACSVCFQLLAVCLAASLFVHLHGRHGFHGLLLGPTFAHASGAILIAL
VEMNLLRMSHPESRGSGPQQQPPFYRRSRPKNQFWVIFGIGSLIMAFDVT
TLVNSSVGDSSLLGPGVQSIP
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mRNA from alignment at E-siliculosus-1a_F_contig1310:21962..23294+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1310.1894.1 ID=mRNA_E-siliculosus-1a_F_contig1310.1894.1|Name=mRNA_E-siliculosus-1a_F_contig1310.1894.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1333bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1310:21962..23294+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GTGCTGCTAGCGTGCTCCGTTTGTTTCCAGCTGCTGGCGGTCTGTCTGGC
GGCGAGCCTTTTCGTTCACCTGCACGGGCGTCATGGTTTTCACGGTATGC
AGTGAATGCTCTGTTCATGACTTGCCGATCCTCTGTCCGCCACGATGAAT
TTCATGGCTGTCGTATCGAAACCGGCCGTTGAAGCGTCTTGGCAATGGTA
GTGGTACAACACTTGCTGTCTTCTGTCATCGAGGGTCGAACTTCTAGTAG
TAGACAAGACTGCGTGCCAGTATCAAAACTTCTCGAAATTACGAGGTAGG
TAATATCAGGTGTGCTCTCCGTCGCCACAACCTTATATCACCACGCTCGT
GTGTCCTCAATAATGCGACCGTCAAACCCGTCGCCTCCCACACTTTCAAC
GCACACACAGGGCTTTTGCTAGGGCCGACATTCGCCCACGCCTCGGGGGC
AATCTTGATAGCTTTGGTGGAGATGAACCTCCTGCGCATGTCCCATCCGG
AGTCGAGAGGCAGCGGGCCTCAACAACAACCACCCTTCTATCGTCGAAGC
CGTCCGAAGAACCAGTTTTGGGTGATTTTTGGGATTGGATCCCTTATTAT
GGCCTTCGACGTGACCACTCTGGTGAACAGCAGTGTTGGTGATTCGAGCC
TCTTGGGTGAGTGCGGCATTCTCGTGAGTACGCAGGCCGGACCAATAATA
ACAATCAGCTTGTGGGAGAAGAGGGTCCTGCATGAAGGCCCAGCAGTTAC
TACCTCGCTTTGCACCTTGAACTCTCCAAGTATCAACGTATTATACTTGA
AACTTCTTACACACGTTCCGGTTCGCTCGACGCCAAGGCGTTGAGGAGGA
AGCAGAACCCGTGGTATCACCGCTACCCACGCTCAGCACCCGCATACTCG
ACAAAAAAATTCAATATACCATCCAGACCAGTAGCAGAAACCTCACCCCA
GATCAATGAGCGTCATGTACGGCTGCACACCTAGTGATGCTGCCCCCGCG
GCAGCAAACGGCAGACTCTCTCGGGTGCTTGGTTTTCGAAGGCCGATGTT
TCAATTTCGGCGTGTATGCTTCCGTTGCTGGTCGGTTGTGCTGCAGCGTG
GAGCCCTAGTAGCTGAAGCGACATGCGGTCAGTTTGCGTTCATCCTTAGT
CCGAGCCCAGCACAGGGTGATCCAGGAGCGTGTACGCACATTATTCTTCG
TATTTCGTACCTGCAGACACGCCGCCCTCTTTCCTGCTAGCCCCCCCCCG
GCTGAAGCGCCTTGCTTTTCCTTCCCGTGCGCCCCAATCTGGACGTCGAT
ACTCACTAGGCCCTGGCGTCCAAAGCATTCCCT
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1310:21962..23294+

>mRNA_E-siliculosus-1a_F_contig1310.1894.1 ID=mRNA_E-siliculosus-1a_F_contig1310.1894.1|Name=mRNA_E-siliculosus-1a_F_contig1310.1894.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=726bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1310:21962..23294+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GTGCTGCTAGCGTGCTCCGTTTGTTTCCAGCTGCTGGCGGTCTGTCTGGC
GGCGAGCCTTTTCGTTCACCTGCACGGGCGTCATGGTTTTCACGGTGCTG
CTAGCGTGCTCCGTTTGTTTCCAGCTGCTGGCGGTCTGTCTGGCGGCGAG
CCTTTTCGTTCACCTGCACGGGCGTCATGGTTTTCACGGGCTTTTGCTAG
GGCCGACATTCGCCCACGCCTCGGGGGCAATCTTGATAGCTTTGGTGGAG
ATGAACCTCCTGCGCATGTCCCATCCGGAGTCGAGAGGCAGCGGGCCTCA
ACAACAACCACCCTTCTATCGTCGAAGCCGTCCGAAGAACCAGTTTTGGG
TGATTTTTGGGATTGGATCCCTTATTATGGCCTTCGACGTGACCACTCTG
GTGAACAGCAGTGTTGGTGATTCGAGCCTCTTGGGGCTTTTGCTAGGGCC
GACATTCGCCCACGCCTCGGGGGCAATCTTGATAGCTTTGGTGGAGATGA
ACCTCCTGCGCATGTCCCATCCGGAGTCGAGAGGCAGCGGGCCTCAACAA
CAACCACCCTTCTATCGTCGAAGCCGTCCGAAGAACCAGTTTTGGGTGAT
TTTTGGGATTGGATCCCTTATTATGGCCTTCGACGTGACCACTCTGGTGA
ACAGCAGTGTTGGTGATTCGAGCCTCTTGGGCCCTGGCGTCCAAAGCATT
CCCGCCCTGGCGTCCAAAGCATTCCC
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