prot_E-siliculosus-1a_F_contig1305.1862.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig1305.1862.1
Unique Nameprot_E-siliculosus-1a_F_contig1305.1862.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length116
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1305.1862.1 vs. uniprot
Match: A0A6H5L9Y2_9PHAE (DNA-directed RNA polymerase subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9Y2_9PHAE)

HSP 1 Score: 222 bits (565), Expect = 7.070e-65
Identity = 116/122 (95.08%), Postives = 116/122 (95.08%), Query Frame = 0
Query:    1 MCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEERAAGADEAEGQEVAKR------YVTLGDITTSTQIYYDPDPRSTVVDEDVELLEGHFDIQEE 116
            MCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEERAAGADEAEGQEVAKR      YVTLGDITTSTQIYYDPDPRSTVVDEDVELLEGHFDIQEE
Sbjct: 1122 MCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEERAAGADEAEGQEVAKRVVDILEYVTLGDITTSTQIYYDPDPRSTVVDEDVELLEGHFDIQEE 1243          
BLAST of mRNA_E-siliculosus-1a_F_contig1305.1862.1 vs. uniprot
Match: D8LRY3_ECTSI (DNA-directed RNA polymerase subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRY3_ECTSI)

HSP 1 Score: 222 bits (565), Expect = 7.130e-65
Identity = 116/122 (95.08%), Postives = 116/122 (95.08%), Query Frame = 0
Query:    1 MCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEERAAGADEAEGQEVAKR------YVTLGDITTSTQIYYDPDPRSTVVDEDVELLEGHFDIQEE 116
            MCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEERAAGADEAEGQEVAKR      YVTLGDITTSTQIYYDPDPRSTVVDEDVELLEGHFDIQEE
Sbjct: 1121 MCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEERAAGADEAEGQEVAKRVVDILEYVTLGDITTSTQIYYDPDPRSTVVDEDVELLEGHFDIQEE 1242          
BLAST of mRNA_E-siliculosus-1a_F_contig1305.1862.1 vs. uniprot
Match: A0A836CHC4_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHC4_9STRA)

HSP 1 Score: 161 bits (407), Expect = 1.370e-43
Identity = 84/120 (70.00%), Postives = 93/120 (77.50%), Query Frame = 0
Query:    1 MCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEERAAGADEAEGQEVAKR------YVTLGDITTSTQIYYDPDPRSTVVDEDVELLEGHFDIQ 114
            MCGVLAAQSIGEPITQMTLNTFH+AGVSAKNVTLGVPRVKEIINVA N RTPSLTIYL       D  + QE AKR      Y+TL D+T STQIYYDPDPR T+++ED E +E   DI+
Sbjct: 1113 MCGVLAAQSIGEPITQMTLNTFHYAGVSAKNVTLGVPRVKEIINVAANPRTPSLTIYL-----SPDSEQDQESAKRVVDMLEYITLADVTVSTQIYYDPDPRDTIIEEDKECVEAFLDIE 1227          
BLAST of mRNA_E-siliculosus-1a_F_contig1305.1862.1 vs. uniprot
Match: W1Q7J6_OGAPD (DNA-directed RNA polymerase subunit n=9 Tax=Ogataea TaxID=461281 RepID=W1Q7J6_OGAPD)

HSP 1 Score: 153 bits (386), Expect = 9.270e-41
Identity = 75/117 (64.10%), Postives = 99/117 (84.62%), Query Frame = 0
Query:    1 MCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYL-EERAAGADEAEGQEVAKRYVTLGDITTSTQIYYDPDPRSTVVDEDVELLEGHFDIQEE 116
            M GV+AAQSIGEP TQMTLNTFH+AGVS+KNVTLGVPR+KEI+NVAKNV+TP+LT+YL EE A+  ++A+  + A  + TL ++T ST+IYYDPDPRSTVV++D++ +E +F I +E
Sbjct: 1024 MVGVIAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNVKTPALTVYLKEEYASDIEKAKSIQSAIEHTTLKNVTASTEIYYDPDPRSTVVEDDIDTVEAYFAIPDE 1140          
BLAST of mRNA_E-siliculosus-1a_F_contig1305.1862.1 vs. uniprot
Match: A0A1E4T1L4_9ASCO (DNA-directed RNA polymerase subunit n=1 Tax=[Candida] arabinofermentans NRRL YB-2248 TaxID=983967 RepID=A0A1E4T1L4_9ASCO)

HSP 1 Score: 151 bits (382), Expect = 3.210e-40
Identity = 72/117 (61.54%), Postives = 98/117 (83.76%), Query Frame = 0
Query:    1 MCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEER-AAGADEAEGQEVAKRYVTLGDITTSTQIYYDPDPRSTVVDEDVELLEGHFDIQEE 116
            M GV+AAQSIGEP TQMTLNTFH+AGVS+KNVTLGVPR+KEI+NVAKNV+TP+LT+YLEE  A+  + A+  + A  + TL ++T ST+IYYDPDP+ST++++D++ +E +F I +E
Sbjct: 1063 MVGVIAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNVKTPALTVYLEEEYASDIENAKSIQSAIEHTTLKNVTASTEIYYDPDPKSTIIEDDIDTVEAYFAIPDE 1179          
BLAST of mRNA_E-siliculosus-1a_F_contig1305.1862.1 vs. uniprot
Match: A0A1E4TPY7_PACTA (DNA-directed RNA polymerase subunit n=1 Tax=Pachysolen tannophilus NRRL Y-2460 TaxID=669874 RepID=A0A1E4TPY7_PACTA)

HSP 1 Score: 151 bits (381), Expect = 4.380e-40
Identity = 74/117 (63.25%), Postives = 99/117 (84.62%), Query Frame = 0
Query:    1 MCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLE-ERAAGADEAEGQEVAKRYVTLGDITTSTQIYYDPDPRSTVVDEDVELLEGHFDIQEE 116
            M GV+AAQSIGEP TQMTLNTFHFAGVS+KNVTLGVPR+KEI+NVAKN++TP+LT+YLE E AA  ++A+  + A  + TL ++T +T+IYYDPDPR+TV++ED++ +E +F I +E
Sbjct: 1068 MVGVVAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVAKNIKTPALTVYLEPEVAADIEKAKVVQSAIEHATLKNVTAATEIYYDPDPRTTVIEEDLDTVEAYFAIPDE 1184          
BLAST of mRNA_E-siliculosus-1a_F_contig1305.1862.1 vs. uniprot
Match: A0A1Y2EZK6_PROLT (DNA-directed RNA polymerase subunit n=1 Tax=Protomyces lactucae-debilis TaxID=2754530 RepID=A0A1Y2EZK6_PROLT)

HSP 1 Score: 150 bits (380), Expect = 5.970e-40
Identity = 71/115 (61.74%), Postives = 97/115 (84.35%), Query Frame = 0
Query:    1 MCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLE-ERAAGADEAEGQEVAKRYVTLGDITTSTQIYYDPDPRSTVVDEDVELLEGHFDIQ 114
            MCG LAAQSIGEP TQMTLNTFH+AGVS+KNVTLGVPR+KEI+NVAKN++TPSLT+YLE E +   ++A+  +   +Y TL  +T++T+I+YDPDPR+TV++ED + +E +F+I+
Sbjct: 1064 MCGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPSLTVYLEPEYSKAIEDAKKIQSVIQYTTLRTVTSATEIHYDPDPRTTVIEEDRDFVEAYFEIE 1178          
BLAST of mRNA_E-siliculosus-1a_F_contig1305.1862.1 vs. uniprot
Match: A0A8H7GS40_9ASCO (DNA-directed RNA polymerase subunit n=2 Tax=Metschnikowia TaxID=27320 RepID=A0A8H7GS40_9ASCO)

HSP 1 Score: 150 bits (379), Expect = 8.030e-40
Identity = 74/117 (63.25%), Postives = 98/117 (83.76%), Query Frame = 0
Query:    1 MCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLE-ERAAGADEAEGQEVAKRYVTLGDITTSTQIYYDPDPRSTVVDEDVELLEGHFDIQEE 116
            M GV+AAQSIGEP TQMTLNTFH+AGVS+KNVTLGVPR+KEI+NVAKN++TP+LT+YLE E A   ++A+  + A  + TL ++T+ST+IYYDPDPRSTV++ED + +E +F I +E
Sbjct: 1002 MVGVVAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPALTVYLEPEIAVDIEKAKVVQSAIEHTTLKNVTSSTEIYYDPDPRSTVIEEDYDTVEAYFAIPDE 1118          
BLAST of mRNA_E-siliculosus-1a_F_contig1305.1862.1 vs. uniprot
Match: A0A4P6XX01_9ASCO (DNA-directed RNA polymerase subunit n=4 Tax=Metschnikowia TaxID=27320 RepID=A0A4P6XX01_9ASCO)

HSP 1 Score: 150 bits (379), Expect = 8.150e-40
Identity = 74/117 (63.25%), Postives = 98/117 (83.76%), Query Frame = 0
Query:    1 MCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLE-ERAAGADEAEGQEVAKRYVTLGDITTSTQIYYDPDPRSTVVDEDVELLEGHFDIQEE 116
            M GV+AAQSIGEP TQMTLNTFH+AGVS+KNVTLGVPR+KEI+NVAKN++TP+LT+YLE E A   ++A+  + A  + TL ++T+ST+IYYDPDPRSTV++ED + +E +F I +E
Sbjct: 1023 MVGVVAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPALTVYLEPEIAVDIEKAKVVQSAIEHTTLKNVTSSTEIYYDPDPRSTVIEEDYDTVEAYFAIPDE 1139          
BLAST of mRNA_E-siliculosus-1a_F_contig1305.1862.1 vs. uniprot
Match: A0A448YT48_BRENA (DNA-directed RNA polymerase subunit n=2 Tax=Brettanomyces TaxID=13366 RepID=A0A448YT48_BRENA)

HSP 1 Score: 150 bits (379), Expect = 8.150e-40
Identity = 72/117 (61.54%), Postives = 97/117 (82.91%), Query Frame = 0
Query:    1 MCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEERAAG-ADEAEGQEVAKRYVTLGDITTSTQIYYDPDPRSTVVDEDVELLEGHFDIQEE 116
            M GV+AAQSIGEP TQMTLNTFH+AGVS+KNVTLGVPR+KEI+NVAKN++TP+LT+YLE++ A   + A+  + A  + TL ++T  T+IYYDPDP+STV++EDV+ +E +F I +E
Sbjct: 1065 MVGVIAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPALTVYLEDKVASDIERAKSIQSAIEHTTLKNVTAVTEIYYDPDPKSTVIEEDVDTVEAYFAIPDE 1181          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1305.1862.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L9Y2_9PHAE7.070e-6595.08DNA-directed RNA polymerase subunit n=1 Tax=Ectoca... [more]
D8LRY3_ECTSI7.130e-6595.08DNA-directed RNA polymerase subunit n=2 Tax=Ectoca... [more]
A0A836CHC4_9STRA1.370e-4370.00DNA-directed RNA polymerase subunit n=1 Tax=Tribon... [more]
W1Q7J6_OGAPD9.270e-4164.10DNA-directed RNA polymerase subunit n=9 Tax=Ogatae... [more]
A0A1E4T1L4_9ASCO3.210e-4061.54DNA-directed RNA polymerase subunit n=1 Tax=[Candi... [more]
A0A1E4TPY7_PACTA4.380e-4063.25DNA-directed RNA polymerase subunit n=1 Tax=Pachys... [more]
A0A1Y2EZK6_PROLT5.970e-4061.74DNA-directed RNA polymerase subunit n=1 Tax=Protom... [more]
A0A8H7GS40_9ASCO8.030e-4063.25DNA-directed RNA polymerase subunit n=2 Tax=Metsch... [more]
A0A4P6XX01_9ASCO8.150e-4063.25DNA-directed RNA polymerase subunit n=4 Tax=Metsch... [more]
A0A448YT48_BRENA8.150e-4061.54DNA-directed RNA polymerase subunit n=2 Tax=Bretta... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007081RNA polymerase Rpb1, domain 5PFAMPF04998RNA_pol_Rpb1_5coord: 1..74
e-value: 5.5E-27
score: 94.9
IPR038593RNA polymerase Rpb1, domain 7 superfamilyGENE3D3.30.1360.140coord: 78..116
e-value: 1.9E-10
score: 42.7
IPR007073RNA polymerase Rpb1, domain 7PFAMPF04990RNA_pol_Rpb1_7coord: 79..116
e-value: 9.1E-11
score: 41.9
NoneNo IPR availablePANTHERPTHR19376DNA-DIRECTED RNA POLYMERASEcoord: 1..115
NoneNo IPR availablePANTHERPTHR19376:SF52DNA-DIRECTED RNA POLYMERASE II SUBUNIT 1coord: 1..115
NoneNo IPR availableSUPERFAMILY64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 1..111

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1305contigE-siliculosus-1a_F_contig1305:33563..34288 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1305.1862.1mRNA_E-siliculosus-1a_F_contig1305.1862.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig1305 33563..34303 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig1305.1862.1 ID=prot_E-siliculosus-1a_F_contig1305.1862.1|Name=mRNA_E-siliculosus-1a_F_contig1305.1862.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=116bp
MCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVR
TPSLTIYLEERAAGADEAEGQEVAKRYVTLGDITTSTQIYYDPDPRSTVV
DEDVELLEGHFDIQEE
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007073RNA_pol_Rpb1_7
IPR038593RNA_pol_Rpb1_7_sf
IPR007081RNA_pol_Rpb1_5