mRNA_E-siliculosus-1a_F_contig1305.1862.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1305.1862.1 vs. uniprot
Match: A0A6H5L9Y2_9PHAE (DNA-directed RNA polymerase subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9Y2_9PHAE) HSP 1 Score: 233 bits (593), Expect = 1.470e-68 Identity = 121/127 (95.28%), Postives = 121/127 (95.28%), Query Frame = 1
Query: 1 VGPGEMCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEERAAGADEAEGQEVAKR------YVTLGDITTSTQIYYDPDPRSTVVDEDVELLEGHFDIQEE 363
VGPGEMCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEERAAGADEAEGQEVAKR YVTLGDITTSTQIYYDPDPRSTVVDEDVELLEGHFDIQEE
Sbjct: 1117 VGPGEMCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEERAAGADEAEGQEVAKRVVDILEYVTLGDITTSTQIYYDPDPRSTVVDEDVELLEGHFDIQEE 1243
BLAST of mRNA_E-siliculosus-1a_F_contig1305.1862.1 vs. uniprot
Match: D8LRY3_ECTSI (DNA-directed RNA polymerase subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRY3_ECTSI) HSP 1 Score: 233 bits (593), Expect = 1.490e-68 Identity = 121/127 (95.28%), Postives = 121/127 (95.28%), Query Frame = 1
Query: 1 VGPGEMCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEERAAGADEAEGQEVAKR------YVTLGDITTSTQIYYDPDPRSTVVDEDVELLEGHFDIQEE 363
VGPGEMCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEERAAGADEAEGQEVAKR YVTLGDITTSTQIYYDPDPRSTVVDEDVELLEGHFDIQEE
Sbjct: 1116 VGPGEMCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEERAAGADEAEGQEVAKRVVDILEYVTLGDITTSTQIYYDPDPRSTVVDEDVELLEGHFDIQEE 1242
BLAST of mRNA_E-siliculosus-1a_F_contig1305.1862.1 vs. uniprot
Match: A0A836CHC4_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHC4_9STRA) HSP 1 Score: 166 bits (421), Expect = 2.180e-45 Identity = 87/125 (69.60%), Postives = 96/125 (76.80%), Query Frame = 1
Query: 1 VGPGEMCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEERAAGADEAEGQEVAKR------YVTLGDITTSTQIYYDPDPRSTVVDEDVELLEGHFDIQ 357
V GEMCGVLAAQSIGEPITQMTLNTFH+AGVSAKNVTLGVPRVKEIINVA N RTPSLTIYL D + QE AKR Y+TL D+T STQIYYDPDPR T+++ED E +E DI+
Sbjct: 1108 VSAGEMCGVLAAQSIGEPITQMTLNTFHYAGVSAKNVTLGVPRVKEIINVAANPRTPSLTIYL-----SPDSEQDQESAKRVVDMLEYITLADVTVSTQIYYDPDPRDTIIEEDKECVEAFLDIE 1227
BLAST of mRNA_E-siliculosus-1a_F_contig1305.1862.1 vs. uniprot
Match: W1Q7J6_OGAPD (DNA-directed RNA polymerase subunit n=9 Tax=Ogataea TaxID=461281 RepID=W1Q7J6_OGAPD) HSP 1 Score: 161 bits (408), Expect = 1.230e-43 Identity = 79/122 (64.75%), Postives = 103/122 (84.43%), Query Frame = 1
Query: 1 VGPGEMCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYL-EERAAGADEAEGQEVAKRYVTLGDITTSTQIYYDPDPRSTVVDEDVELLEGHFDIQEE 363
V PGEM GV+AAQSIGEP TQMTLNTFH+AGVS+KNVTLGVPR+KEI+NVAKNV+TP+LT+YL EE A+ ++A+ + A + TL ++T ST+IYYDPDPRSTVV++D++ +E +F I +E
Sbjct: 1019 VNPGEMVGVIAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNVKTPALTVYLKEEYASDIEKAKSIQSAIEHTTLKNVTASTEIYYDPDPRSTVVEDDIDTVEAYFAIPDE 1140
BLAST of mRNA_E-siliculosus-1a_F_contig1305.1862.1 vs. uniprot
Match: A0A1E4T1L4_9ASCO (DNA-directed RNA polymerase subunit n=1 Tax=[Candida] arabinofermentans NRRL YB-2248 TaxID=983967 RepID=A0A1E4T1L4_9ASCO) HSP 1 Score: 160 bits (404), Expect = 4.260e-43 Identity = 76/122 (62.30%), Postives = 102/122 (83.61%), Query Frame = 1
Query: 1 VGPGEMCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEER-AAGADEAEGQEVAKRYVTLGDITTSTQIYYDPDPRSTVVDEDVELLEGHFDIQEE 363
V PGEM GV+AAQSIGEP TQMTLNTFH+AGVS+KNVTLGVPR+KEI+NVAKNV+TP+LT+YLEE A+ + A+ + A + TL ++T ST+IYYDPDP+ST++++D++ +E +F I +E
Sbjct: 1058 VNPGEMVGVIAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNVKTPALTVYLEEEYASDIENAKSIQSAIEHTTLKNVTASTEIYYDPDPKSTIIEDDIDTVEAYFAIPDE 1179
BLAST of mRNA_E-siliculosus-1a_F_contig1305.1862.1 vs. uniprot
Match: A0A448YT48_BRENA (DNA-directed RNA polymerase subunit n=2 Tax=Brettanomyces TaxID=13366 RepID=A0A448YT48_BRENA) HSP 1 Score: 159 bits (401), Expect = 1.080e-42 Identity = 76/122 (62.30%), Postives = 101/122 (82.79%), Query Frame = 1
Query: 1 VGPGEMCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEERAAG-ADEAEGQEVAKRYVTLGDITTSTQIYYDPDPRSTVVDEDVELLEGHFDIQEE 363
V PGEM GV+AAQSIGEP TQMTLNTFH+AGVS+KNVTLGVPR+KEI+NVAKN++TP+LT+YLE++ A + A+ + A + TL ++T T+IYYDPDP+STV++EDV+ +E +F I +E
Sbjct: 1060 VNPGEMVGVIAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPALTVYLEDKVASDIERAKSIQSAIEHTTLKNVTAVTEIYYDPDPKSTVIEEDVDTVEAYFAIPDE 1181
BLAST of mRNA_E-siliculosus-1a_F_contig1305.1862.1 vs. uniprot
Match: A0A1E4TPY7_PACTA (DNA-directed RNA polymerase subunit n=1 Tax=Pachysolen tannophilus NRRL Y-2460 TaxID=669874 RepID=A0A1E4TPY7_PACTA) HSP 1 Score: 159 bits (401), Expect = 1.080e-42 Identity = 78/122 (63.93%), Postives = 103/122 (84.43%), Query Frame = 1
Query: 1 VGPGEMCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLE-ERAAGADEAEGQEVAKRYVTLGDITTSTQIYYDPDPRSTVVDEDVELLEGHFDIQEE 363
V PGEM GV+AAQSIGEP TQMTLNTFHFAGVS+KNVTLGVPR+KEI+NVAKN++TP+LT+YLE E AA ++A+ + A + TL ++T +T+IYYDPDPR+TV++ED++ +E +F I +E
Sbjct: 1063 VHPGEMVGVVAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVAKNIKTPALTVYLEPEVAADIEKAKVVQSAIEHATLKNVTAATEIYYDPDPRTTVIEEDLDTVEAYFAIPDE 1184
BLAST of mRNA_E-siliculosus-1a_F_contig1305.1862.1 vs. uniprot
Match: A0A8H7GS40_9ASCO (DNA-directed RNA polymerase subunit n=2 Tax=Metschnikowia TaxID=27320 RepID=A0A8H7GS40_9ASCO) HSP 1 Score: 158 bits (399), Expect = 1.980e-42 Identity = 78/122 (63.93%), Postives = 102/122 (83.61%), Query Frame = 1
Query: 1 VGPGEMCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLE-ERAAGADEAEGQEVAKRYVTLGDITTSTQIYYDPDPRSTVVDEDVELLEGHFDIQEE 363
V PGEM GV+AAQSIGEP TQMTLNTFH+AGVS+KNVTLGVPR+KEI+NVAKN++TP+LT+YLE E A ++A+ + A + TL ++T+ST+IYYDPDPRSTV++ED + +E +F I +E
Sbjct: 997 VHPGEMVGVVAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPALTVYLEPEIAVDIEKAKVVQSAIEHTTLKNVTSSTEIYYDPDPRSTVIEEDYDTVEAYFAIPDE 1118
BLAST of mRNA_E-siliculosus-1a_F_contig1305.1862.1 vs. uniprot
Match: A0A4P6XX01_9ASCO (DNA-directed RNA polymerase subunit n=4 Tax=Metschnikowia TaxID=27320 RepID=A0A4P6XX01_9ASCO) HSP 1 Score: 158 bits (399), Expect = 2.010e-42 Identity = 78/122 (63.93%), Postives = 102/122 (83.61%), Query Frame = 1
Query: 1 VGPGEMCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLE-ERAAGADEAEGQEVAKRYVTLGDITTSTQIYYDPDPRSTVVDEDVELLEGHFDIQEE 363
V PGEM GV+AAQSIGEP TQMTLNTFH+AGVS+KNVTLGVPR+KEI+NVAKN++TP+LT+YLE E A ++A+ + A + TL ++T+ST+IYYDPDPRSTV++ED + +E +F I +E
Sbjct: 1018 VHPGEMVGVVAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPALTVYLEPEIAVDIEKAKVVQSAIEHTTLKNVTSSTEIYYDPDPRSTVIEEDYDTVEAYFAIPDE 1139
BLAST of mRNA_E-siliculosus-1a_F_contig1305.1862.1 vs. uniprot
Match: A0A1L2FUN6_9MYCE (DNA-directed RNA polymerase subunit (Fragment) n=1 Tax=Coremiostelium polycephalum TaxID=142831 RepID=A0A1L2FUN6_9MYCE) HSP 1 Score: 157 bits (398), Expect = 2.730e-42 Identity = 74/122 (60.66%), Postives = 98/122 (80.33%), Query Frame = 1
Query: 1 VGPGEMCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEERAA-GADEAEGQEVAKRYVTLGDITTSTQIYYDPDPRSTVVDEDVELLEGHFDIQEE 363
V PGEM G +AAQSIGEP TQMTLNTFHFAGVS+KNVTLGVPR+KEIIN+AKNV+TPSLT+YL+ A D+A+ + Y TL +T +T+IYYDPDP++T+++EDV+ + +F++ +E
Sbjct: 1058 VHPGEMVGAIAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINIAKNVKTPSLTVYLKPHCARDLDKAKAVQAQLEYTTLAKVTAATEIYYDPDPQNTIIEEDVDFVNSYFELPDE 1179 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1305.1862.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1305.1862.1 >prot_E-siliculosus-1a_F_contig1305.1862.1 ID=prot_E-siliculosus-1a_F_contig1305.1862.1|Name=mRNA_E-siliculosus-1a_F_contig1305.1862.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=116bp MCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRback to top mRNA from alignment at E-siliculosus-1a_F_contig1305:33563..34303- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1305.1862.1 ID=mRNA_E-siliculosus-1a_F_contig1305.1862.1|Name=mRNA_E-siliculosus-1a_F_contig1305.1862.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=741bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1305:33563..34303- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1305:33563..34303- >mRNA_E-siliculosus-1a_F_contig1305.1862.1 ID=mRNA_E-siliculosus-1a_F_contig1305.1862.1|Name=mRNA_E-siliculosus-1a_F_contig1305.1862.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=696bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1305:33563..34303- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |