prot_E-siliculosus-1a_F_contig12984.1806.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_E-siliculosus-1a_F_contig12984.1806.1
Unique Name	prot_E-siliculosus-1a_F_contig12984.1806.1
Type	polypeptide
Organism	Ectocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length	65

Homology

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BLAST of mRNA_E-siliculosus-1a_F_contig12984.1806.1 vs. uniprot
Match: D7FXQ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXQ0_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 3.190e-25
Identity = 53/64 (82.81%), Postives = 55/64 (85.94%), Query Frame = 0

Query:    1 MWTLTALVLSAWTGRDTVVDLMGLMFVTVPFKAFVETLGFVLLVLMNVRWPASTDWPSVSFLPP 64
            MWTLTALVLSA TGR TVVD+MGLMFVTVPFKAFVETLGFVLLVLMN     + DWPSV FLPP
Sbjct:   46 MWTLTALVLSARTGRYTVVDIMGLMFVTVPFKAFVETLGFVLLVLMN-----APDWPSVVFLPP 104

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BLAST of mRNA_E-siliculosus-1a_F_contig12984.1806.1 vs. uniprot
Match: D7FU49_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU49_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 7.390e-12
Identity = 34/48 (70.83%), Postives = 43/48 (89.58%), Query Frame = 0

Query:    3 TLTALVLSAWTGRDTVVDLMGLMFVTVPFKAFVETLGFVLLVLMNVRW 50
            TLTAL+LSA TG+D VVD++ +MFVTVPF+AFVET+ FVLLVLM+ R+
Sbjct:   54 TLTALILSALTGQDAVVDILAVMFVTVPFQAFVETVSFVLLVLMHARF 101

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BLAST of mRNA_E-siliculosus-1a_F_contig12984.1806.1 vs. uniprot
Match: D7G509_ECTSI (Uncharacterized protein n=5 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G509_ECTSI)

HSP 1 Score: 65.9 bits (159), Expect = 4.680e-11
Identity = 29/50 (58.00%), Postives = 43/50 (86.00%), Query Frame = 0

Query:    1 MWTLTALVLSAWTGRDTVVDLMGLMFVTVPFKAFVETLGFVLLVLMNVRW 50
            +WTL AL+LSA++GRD V+D+M LMF T+PF +FV+TLGFVL++L++  +
Sbjct:   24 IWTLIALILSAFSGRDIVIDIMALMFTTMPFDSFVKTLGFVLVILLHAHF 73

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BLAST of mRNA_E-siliculosus-1a_F_contig12984.1806.1 vs. uniprot
Match: A0A6H5KVY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVY5_9PHAE)

HSP 1 Score: 46.2 bits (108), Expect = 6.110e-5
Identity = 23/26 (88.46%), Postives = 24/26 (92.31%), Query Frame = 0

Query:   25 MFVTVPFKAFVETLGFVLLVLMNVRW 50
            MFVTVP KAFVETLGFVLLVLMN R+
Sbjct:    1 MFVTVPSKAFVETLGFVLLVLMNARF 26

The following BLAST results are available for this feature:

BLAST of mRNA_E-siliculosus-1a_F_contig12984.1806.1 vs. uniprot

BLAST of mRNA_E-siliculosus-1a_F_contig12984.1806.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 4


Match Name	E-value	Identity	Description
D7FXQ0_ECTSI	3.190e-25	82.81	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
D7FU49_ECTSI	7.390e-12	70.83	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
D7G509_ECTSI	4.680e-11	58.00	Uncharacterized protein n=5 Tax=Ectocarpus silicul...	[more]
A0A6H5KVY5_9PHAE	6.110e-5	88.46	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 46..64
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..1
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..13
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 10..13
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 2..9
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 23..45
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 14..22
None	No IPR available	TMHMM	TMhelix		coord: 23..45

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E-siliculosus-1a_F_contig12984	contig	E-siliculosus-1a_F_contig12984:365..1349 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female	2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90	2022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_E-siliculosus-1a_F_contig12984.1806.1	mRNA_E-siliculosus-1a_F_contig12984.1806.1	Ectocarpus siliculosus Ec863f_EcPH12_90f female	mRNA	E-siliculosus-1a_F_contig12984 365..1373 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_E-siliculosus-1a_F_contig12984.1806.1 ID=prot_E-siliculosus-1a_F_contig12984.1806.1|Name=mRNA_E-siliculosus-1a_F_contig12984.1806.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=65bp
MWTLTALVLSAWTGRDTVVDLMGLMFVTVPFKAFVETLGFVLLVLMNVRW
PASTDWPSVSFLPP*