mRNA_E-siliculosus-1a_F_contig12984.1806.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig12984.1806.1
Unique NamemRNA_E-siliculosus-1a_F_contig12984.1806.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig12984.1806.1 vs. uniprot
Match: D7FXQ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXQ0_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 2.950e-30
Identity = 59/72 (81.94%), Postives = 62/72 (86.11%), Query Frame = 1 
Query:    1 SEFPQSVIMWTLTALVLSAWTGRDTVVDLMGLMFVTVPFKAFVETLGFVLLVLMNVRWPASTDWPSVSFLPP 216
            SEFP+S IMWTLTALVLSA TGR TVVD+MGLMFVTVPFKAFVETLGFVLLVLMN     + DWPSV FLPP
Sbjct:   38 SEFPRSAIMWTLTALVLSARTGRYTVVDIMGLMFVTVPFKAFVETLGFVLLVLMN-----APDWPSVVFLPP 104
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BLAST of mRNA_E-siliculosus-1a_F_contig12984.1806.1 vs. uniprot
Match: D7FU49_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU49_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 5.300e-16
Identity = 40/58 (68.97%), Postives = 51/58 (87.93%), Query Frame = 1 
Query:    1 SEFPQSVIMWTLTALVLSAWTGRDTVVDLMGLMFVTVPFKAFVETLGFVLLVLMNVRW 174
            SEFP +VI+ TLTAL+LSA TG+D VVD++ +MFVTVPF+AFVET+ FVLLVLM+ R+
Sbjct:   44 SEFPWAVIIGTLTALILSALTGQDAVVDILAVMFVTVPFQAFVETVSFVLLVLMHARF 101
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BLAST of mRNA_E-siliculosus-1a_F_contig12984.1806.1 vs. uniprot
Match: D7G509_ECTSI (Uncharacterized protein n=5 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G509_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 1.600e-14
Identity = 34/58 (58.62%), Postives = 49/58 (84.48%), Query Frame = 1 
Query:    1 SEFPQSVIMWTLTALVLSAWTGRDTVVDLMGLMFVTVPFKAFVETLGFVLLVLMNVRW 174
            SEFP + I+WTL AL+LSA++GRD V+D+M LMF T+PF +FV+TLGFVL++L++  +
Sbjct:   16 SEFPWASIIWTLIALILSAFSGRDIVIDIMALMFTTMPFDSFVKTLGFVLVILLHAHF 73
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BLAST of mRNA_E-siliculosus-1a_F_contig12984.1806.1 vs. uniprot
Match: A0A6H5KVY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVY5_9PHAE)

HSP 1 Score: 46.2 bits (108), Expect = 8.210e-5
Identity = 23/26 (88.46%), Postives = 24/26 (92.31%), Query Frame = 1 
Query:   97 MFVTVPFKAFVETLGFVLLVLMNVRW 174
            MFVTVP KAFVETLGFVLLVLMN R+
Sbjct:    1 MFVTVPSKAFVETLGFVLLVLMNARF 26
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig12984.1806.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FXQ0_ECTSI2.950e-3081.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FU49_ECTSI5.300e-1668.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G509_ECTSI1.600e-1458.62Uncharacterized protein n=5 Tax=Ectocarpus silicul... [more]
A0A6H5KVY5_9PHAE8.210e-588.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig12984contigE-siliculosus-1a_F_contig12984:365..1373 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size195
Model size219
Exons3
Ec32 orthologEc-28_001670.1
Ec32 ortholog descriptionhypothetical protein
Hectar predicted targeting categorysignal peptide
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig12984.1806.1prot_E-siliculosus-1a_F_contig12984.1806.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig12984 365..1349 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927816.7111943-CDS-E-siliculosus-1a_F_contig12984:364..4101622927816.7111943-CDS-E-siliculosus-1a_F_contig12984:364..410Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12984 365..410 -
1696318692.6164303-CDS-E-siliculosus-1a_F_contig12984:364..4101696318692.6164303-CDS-E-siliculosus-1a_F_contig12984:364..410Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12984 365..410 -
1622927816.7226071-CDS-E-siliculosus-1a_F_contig12984:787..8701622927816.7226071-CDS-E-siliculosus-1a_F_contig12984:787..870Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12984 788..870 -
1696318692.626723-CDS-E-siliculosus-1a_F_contig12984:787..8701696318692.626723-CDS-E-siliculosus-1a_F_contig12984:787..870Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12984 788..870 -
1622927816.7317827-CDS-E-siliculosus-1a_F_contig12984:1283..13491622927816.7317827-CDS-E-siliculosus-1a_F_contig12984:1283..1349Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12984 1284..1349 -
1696318692.6393912-CDS-E-siliculosus-1a_F_contig12984:1283..13491696318692.6393912-CDS-E-siliculosus-1a_F_contig12984:1283..1349Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12984 1284..1349 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927816.7433047-UTR-E-siliculosus-1a_F_contig12984:1349..13731622927816.7433047-UTR-E-siliculosus-1a_F_contig12984:1349..1373Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig12984 1350..1373 -
1696318692.6494348-UTR-E-siliculosus-1a_F_contig12984:1349..13731696318692.6494348-UTR-E-siliculosus-1a_F_contig12984:1349..1373Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig12984 1350..1373 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig12984.1806.1

>prot_E-siliculosus-1a_F_contig12984.1806.1 ID=prot_E-siliculosus-1a_F_contig12984.1806.1|Name=mRNA_E-siliculosus-1a_F_contig12984.1806.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=65bp
MWTLTALVLSAWTGRDTVVDLMGLMFVTVPFKAFVETLGFVLLVLMNVRW
PASTDWPSVSFLPP*
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mRNA from alignment at E-siliculosus-1a_F_contig12984:365..1373-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig12984.1806.1 ID=mRNA_E-siliculosus-1a_F_contig12984.1806.1|Name=mRNA_E-siliculosus-1a_F_contig12984.1806.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1009bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12984:365..1373- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
AGCGAGTTCCCGCAGTCCGTCATCATGTGGACGCTAACAGCGTTGGTACT
ATCGGCGTGGACGGGAAGAGACACCGTCGTAGACTTAATGGTGAGGCCAG
GCTTGGTAACGCCGGGAATTAAACGATTTTTCCTGTCTCTTTTTGTTTTC
TTCCCATCCTTCGCTGACCAACGAGTCGTGCATAGCAAGTGGTGCAGTTC
ACCCAAACCAAGCGCCGCGATTAATTTCTCTTGATGAGACATTAAATATT
CAGCGCCCGAAACGCTGGTCTGGTGTCAATTCTCCAATACATGGGTGTTA
AGAGCGGTATCTGTCTAAAACTAAAGAGGATATTGTTGTTAATCTATTGC
AAGTTACTTTTGGCGAACCTATCCTAGGATTGACTGGAGCCTGGTTTGTT
AATCTAGCACGATTTAGGGTGCTCGACCGAAGCCAACCTTTCCCTTCTGT
GCCCATCGCACCGCACCACACCGCATCGCGGCCGCACGGCATGTCAACCA
CAGGGCTTAATGTTCGTCACGGTGCCCTTCAAAGCATTCGTCGAGACGCT
CGGCTTCGTGCTCTTGGTCCTGATGAACGTGAGATGGTGTTGATTTGACA
CGTACACGGTATACTATAGAAGAGAAGAACATTTGCACGACATGTCTGCA
GTATAACAACCCTACCACGGTGGTGTGTAGGCGGTGTGTGCCGGACGAAA
ATACGTCGTGAAAACGGGCACTTAGTTTCTGGCCTCCGCTGAAAGCTTAG
CTGCAAATACGACTGGGTCCCATCAAAGTCAGCCCAGTCATGCCTAGCAG
ACGTTTACCTTCGCAAAGCTCCATGCAAAAGGCGCAGCACTCATCGCCTG
ATTTTTCGCGCCGCGCATGAAGAAGAACGAGCGAAATCGCTAGCACCGTC
ATCCCTCGCTCTGCTGATTTTGCATGATATTCTCCTTGCATTCACAATTC
GCTTGTATCGTAGGCCCGCTTCTACGGATTGGCCGAGCGTTTCCTTTCTA
CCGCCGTAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig12984:365..1373-

>mRNA_E-siliculosus-1a_F_contig12984.1806.1 ID=mRNA_E-siliculosus-1a_F_contig12984.1806.1|Name=mRNA_E-siliculosus-1a_F_contig12984.1806.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=390bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12984:365..1373- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTGGACGCTAACAGCGTTGGTACTATCGGCGTGGACGGGAAGAGACAC
CGTCGTAGACTTAATGATGTGGACGCTAACAGCGTTGGTACTATCGGCGT
GGACGGGAAGAGACACCGTCGTAGACTTAATGGGCTTAATGTTCGTCACG
GTGCCCTTCAAAGCATTCGTCGAGACGCTCGGCTTCGTGCTCTTGGTCCT
GATGAACGTGAGATGGGCTTAATGTTCGTCACGGTGCCCTTCAAAGCATT
CGTCGAGACGCTCGGCTTCGTGCTCTTGGTCCTGATGAACGTGAGATGGC
CCGCTTCTACGGATTGGCCGAGCGTTTCCTTTCTACCGCCGTAGGCCCGC
TTCTACGGATTGGCCGAGCGTTTCCTTTCTACCGCCGTAG
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