prot_E-siliculosus-1a_F_contig1274.1683.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig1274.1683.1
Unique Nameprot_E-siliculosus-1a_F_contig1274.1683.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length270
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1274.1683.1 vs. uniprot
Match: A0A6H5LLL6_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LLL6_9PHAE)

HSP 1 Score: 280 bits (717), Expect = 1.770e-84
Identity = 239/273 (87.55%), Postives = 243/273 (89.01%), Query Frame = 0
Query:    2 DEAFIAQGAEAASSADCAICLGGFEEGDVLRKLPCLHFFHQKCVDEWLHLSVSCPLCKRSARDGLRRNRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXT----PVGAWFRGLPSSLARLFAHSGDDXXXXXXXXXXXXXWQRVDDDVSDGEEKFDDDRGDTGNDDGSPLDGETRRMRVLNANIAAFFGGAEPSPPHVSPESLGSSSPXXXXXXXXXXXXXXXXXXXXXXXXXXRSLFGGNRFDGXXXXXXXXXXASAEYELAPIGP 270
            D AFIAQGAEAASSADC+ICLGGFE+GDVLRKLPCLH FHQKCVDEWLHLSVSCPLCKRSAR+GLRRN XXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXX  T    PVGAWFRGLP SLARLFAHSGD XXXXXXXXXXXXX          GEEKFDDDRGDTGNDDGSPLDGETRRMRVLNANIAAFFGGAEPSP HVSPESLGSSSP    XXXXXXXXXXXXXXXXXXXXXXR +FGGNRF  XXXXXXXXXXASAEYELAPIGP
Sbjct:  648 DGAFIAQGAEAASSADCSICLGGFEDGDVLRKLPCLHLFHQKCVDEWLHLSVSCPLCKRSAREGLRRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPXXXXXAPTRTPTPVGAWFRGLPPSLARLFAHSGDGXXXXXXXXXXXXXXXXXXXXXXXGEEKFDDDRGDTGNDDGSPLDGETRRMRVLNANIAAFFGGAEPSP-HVSPESLGSSSPGGSIXXXXXXXXXXXXXXXXXXXXXXRGVFGGNRFXXXXXXXXXXXXASAEYELAPIGP 919          
BLAST of mRNA_E-siliculosus-1a_F_contig1274.1683.1 vs. uniprot
Match: D7FI05_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI05_ECTSI)

HSP 1 Score: 242 bits (618), Expect = 1.880e-69
Identity = 177/190 (93.16%), Postives = 181/190 (95.26%), Query Frame = 0
Query:    1 DDEAFIAQGAEAASSADCAICLGGFEEGDVLRKLPCLHFFHQKCVDEWLHLSVSCPLCKRSARDGLRRNRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPVGAWFRGLPSSLARLFAHSGDDXXXXXXXXXXXXX--WQRVDDDVSDGEEKFDDDRGDTGNDDGSPLDGETRRMRVLNANIA 188
            DDEAFIAQGAEAASSADCAICLGGFEEGDVLRKLPCLHFFHQKCVDEWLHLSVSCPLCKRSAR+GLRRN XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPVGAWFRGLPSSLARLFAHSGD XXXXXXXXXXX    WQRVDDD S+GEEK DDDRGDTG+D+ SPLDGETRRMRVLNANIA
Sbjct: 1163 DDEAFIAQGAEAASSADCAICLGGFEEGDVLRKLPCLHFFHQKCVDEWLHLSVSCPLCKRSAREGLRRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPVGAWFRGLPSSLARLFAHSGDGXXXXXXXXXXXGRRQWQRVDDDGSNGEEKLDDDRGDTGHDEDSPLDGETRRMRVLNANIA 1352          
BLAST of mRNA_E-siliculosus-1a_F_contig1274.1683.1 vs. uniprot
Match: A0A5B8MYU6_9CHLO (RING-type E3 ubiquitin transferase n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MYU6_9CHLO)

HSP 1 Score: 77.4 bits (189), Expect = 6.360e-13
Identity = 29/51 (56.86%), Postives = 38/51 (74.51%), Query Frame = 0
Query:   17 DCAICLGGFEEGDVLRKLPCLHFFHQKCVDEWLHLSVSCPLCKRSARDGLR 67
            DC++C+  FEEGD +R+LPC H FH +CVDEWL L  SCP+C+   RD L+
Sbjct:  112 DCSVCMEAFEEGDRIRELPCGHMFHLECVDEWLKLHPSCPICREDVRDALK 162          
BLAST of mRNA_E-siliculosus-1a_F_contig1274.1683.1 vs. uniprot
Match: A0A2G5BKA4_COERN (RING-type domain-containing protein n=1 Tax=Coemansia reversa (strain ATCC 12441 / NRRL 1564) TaxID=763665 RepID=A0A2G5BKA4_COERN)

HSP 1 Score: 77.4 bits (189), Expect = 1.030e-12
Identity = 30/43 (69.77%), Postives = 36/43 (83.72%), Query Frame = 0
Query:   18 CAICLGGFEEGDVLRKLPCLHFFHQKCVDEWLHLSVSCPLCKR 60
            CAICL  +++GD+LR LPC H  HQKCVDEWLH++ SCPLCKR
Sbjct:  257 CAICLCEYDDGDILRLLPCNHHLHQKCVDEWLHINQSCPLCKR 299          
BLAST of mRNA_E-siliculosus-1a_F_contig1274.1683.1 vs. uniprot
Match: A0A0A9DQ84_ARUDO (RING-type domain-containing protein n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9DQ84_ARUDO)

HSP 1 Score: 71.6 bits (174), Expect = 1.190e-12
Identity = 27/52 (51.92%), Postives = 38/52 (73.08%), Query Frame = 0
Query:   12 AASSADCAICLGGFEEGDVLRKLPCLHFFHQKCVDEWLHLSVSCPLCKRSAR 63
            AA + +C ICL  +++G  LR+LPC H FH  C+D+WLH++ +CPLCK S R
Sbjct:   15 AAEAMECCICLSAYDDGAELRELPCGHHFHCACIDKWLHINATCPLCKYSVR 66          
BLAST of mRNA_E-siliculosus-1a_F_contig1274.1683.1 vs. uniprot
Match: A0A1Y1VZL6_9FUNG (RING-type domain-containing protein n=1 Tax=Linderina pennispora TaxID=61395 RepID=A0A1Y1VZL6_9FUNG)

HSP 1 Score: 76.6 bits (187), Expect = 2.390e-12
Identity = 32/48 (66.67%), Postives = 36/48 (75.00%), Query Frame = 0
Query:   18 CAICLGGFEEGDVLRKLPCLHFFHQKCVDEWLHLSVSCPLCKRSARDG 65
            CAICL  +E GDVLR LPC H  HQ CVDEWLH++ +CPLCKR A  G
Sbjct:  284 CAICLCEYENGDVLRLLPCGHHMHQSCVDEWLHINRTCPLCKRVATPG 331          
BLAST of mRNA_E-siliculosus-1a_F_contig1274.1683.1 vs. uniprot
Match: A0A4P9XK66_9FUNG (RING-type domain-containing protein (Fragment) n=1 Tax=Thamnocephalis sphaerospora TaxID=78915 RepID=A0A4P9XK66_9FUNG)

HSP 1 Score: 73.2 bits (178), Expect = 3.220e-12
Identity = 28/53 (52.83%), Postives = 40/53 (75.47%), Query Frame = 0
Query:   18 CAICLGGFEEGDVLRKLPCLHFFHQKCVDEWLHLSVSCPLCKRSARDGLRRNR 70
            C+ICL  +EEG+ LR+L C H+FHQ CVD+WLH++  CP+CK++    LR N+
Sbjct:   91 CSICLADYEEGETLRQLQCHHYFHQSCVDQWLHINAHCPVCKQAL---LRSNK 140          
BLAST of mRNA_E-siliculosus-1a_F_contig1274.1683.1 vs. uniprot
Match: A0A261Y600_9FUNG (RING-type domain-containing protein n=1 Tax=Bifiguratus adelaidae TaxID=1938954 RepID=A0A261Y600_9FUNG)

HSP 1 Score: 75.9 bits (185), Expect = 3.540e-12
Identity = 31/50 (62.00%), Postives = 39/50 (78.00%), Query Frame = 0
Query:   13 ASSADCAICLGGFEEGDVLRKLPCLHFFHQKCVDEWLHLSVSCPLCKRSA 62
            A  A CAIC+  +E+GD+LR LPC H FHQ CVDEW+ L+ +CPLCK+SA
Sbjct:  289 AQDAVCAICICDYEQGDLLRLLPCRHHFHQSCVDEWMSLNRACPLCKQSA 338          
BLAST of mRNA_E-siliculosus-1a_F_contig1274.1683.1 vs. uniprot
Match: A0A2P2ISY0_RHIMU (Cleavage and polyadenylation specificity factor n=1 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2ISY0_RHIMU)

HSP 1 Score: 69.7 bits (169), Expect = 6.080e-12
Identity = 27/55 (49.09%), Postives = 39/55 (70.91%), Query Frame = 0
Query:   16 ADCAICLGGFEEGDVLRKLPCLHFFHQKCVDEWLHLSVSCPLCKRSARDGLRRNR 70
            A+C ICL  +++GD LR+LPC H FH  CVD+WL+++ +CPLCK       R++R
Sbjct:   19 AECCICLCAYDDGDELRELPCSHHFHSACVDKWLYINSTCPLCKYDILKCSRQDR 73          
BLAST of mRNA_E-siliculosus-1a_F_contig1274.1683.1 vs. uniprot
Match: A0A2I0AD46_9ASPA (RING-H2 finger protein ATL79 n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2I0AD46_9ASPA)

HSP 1 Score: 71.6 bits (174), Expect = 7.880e-12
Identity = 32/55 (58.18%), Postives = 39/55 (70.91%), Query Frame = 0
Query:   10 AEAASSADCAICLGGFEEGDVLRKLP-CLHFFHQKCVDEWLHLSVSCPLCKRSAR 63
            A A   A+CAICL GF +GD++R LP C H FH KCVD+WL  + SCP C+RS R
Sbjct:   93 AGAGGHAECAICLCGFSDGDLVRVLPSCSHVFHLKCVDQWLSSNASCPSCRRSCR 147          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1274.1683.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LLL6_9PHAE1.770e-8487.55RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D7FI05_ECTSI1.880e-6993.16RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A5B8MYU6_9CHLO6.360e-1356.86RING-type E3 ubiquitin transferase n=1 Tax=Chlorop... [more]
A0A2G5BKA4_COERN1.030e-1269.77RING-type domain-containing protein n=1 Tax=Coeman... [more]
A0A0A9DQ84_ARUDO1.190e-1251.92RING-type domain-containing protein n=1 Tax=Arundo... [more]
A0A1Y1VZL6_9FUNG2.390e-1266.67RING-type domain-containing protein n=1 Tax=Linder... [more]
A0A4P9XK66_9FUNG3.220e-1252.83RING-type domain-containing protein (Fragment) n=1... [more]
A0A261Y600_9FUNG3.540e-1262.00RING-type domain-containing protein n=1 Tax=Bifigu... [more]
A0A2P2ISY0_RHIMU6.080e-1249.09Cleavage and polyadenylation specificity factor n=... [more]
A0A2I0AD46_9ASPA7.880e-1258.18RING-H2 finger protein ATL79 n=1 Tax=Apostasia she... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 18..58
e-value: 4.9E-7
score: 39.4
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 17..59
e-value: 1.6E-12
score: 47.6
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 18..59
score: 12.224
IPR011016Zinc finger, RING-CH-typeSMARTSM00744ringv_2coord: 17..59
e-value: 0.0014
score: 14.6
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 3..66
e-value: 5.0E-19
score: 69.3
NoneNo IPR availablePANTHERPTHR45798:SF44RING-H2 FINGER PROTEIN ATL61-RELATEDcoord: 10..85
NoneNo IPR availablePANTHERPTHR45798FAMILY NOT NAMEDcoord: 10..85
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 13..62

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1274contigE-siliculosus-1a_F_contig1274:32335..33681 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1274.1683.1mRNA_E-siliculosus-1a_F_contig1274.1683.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig1274 32335..33681 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig1274.1683.1 ID=prot_E-siliculosus-1a_F_contig1274.1683.1|Name=mRNA_E-siliculosus-1a_F_contig1274.1683.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=270bp
DDEAFIAQGAEAASSADCAICLGGFEEGDVLRKLPCLHFFHQKCVDEWLH
LSVSCPLCKRSARDGLRRNRRRRRRARAAAEAAAQRAQQHRDSTVPATTA
TPTRTPTPVGAWFRGLPSSLARLFAHSGDDGGGGGGGRGGRRQWQRVDDD
VSDGEEKFDDDRGDTGNDDGSPLDGETRRMRVLNANIAAFFGGAEPSPPH
VSPESLGSSSPGGSSSSNTGSSDGGGDAAVGGRSSALRSLFGGNRFDGDG
GRRSGGGGASAEYELAPIGP
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR011016Znf_RING-CH
IPR001841Znf_RING