mRNA_E-siliculosus-1a_F_contig1274.1683.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1274.1683.1 vs. uniprot
Match: A0A6H5LLL6_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LLL6_9PHAE) HSP 1 Score: 280 bits (717), Expect = 1.770e-84 Identity = 239/273 (87.55%), Postives = 243/273 (89.01%), Query Frame = 1
Query: 4 DEAFIAQGAEAASSADCAICLGGFEEGDVLRKLPCLHFFHQKCVDEWLHLSVSCPLCKRSARDGLRRNRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXT----PVGAWFRGLPSSLARLFAHSGDDXXXXXXXXXXXXXWQRVDDDVSDGEEKFDDDRGDTGNDDGSPLDGETRRMRVLNANIAAFFGGAEPSPPHVSPESLGSSSPXXXXXXXXXXXXXXXXXXXXXXXXXXRSLFGGNRFDGXXXXXXXXXXASAEYELAPIGP 810
D AFIAQGAEAASSADC+ICLGGFE+GDVLRKLPCLH FHQKCVDEWLHLSVSCPLCKRSAR+GLRRN XXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXX T PVGAWFRGLP SLARLFAHSGD XXXXXXXXXXXXX GEEKFDDDRGDTGNDDGSPLDGETRRMRVLNANIAAFFGGAEPSP HVSPESLGSSSP XXXXXXXXXXXXXXXXXXXXXXR +FGGNRF XXXXXXXXXXASAEYELAPIGP
Sbjct: 648 DGAFIAQGAEAASSADCSICLGGFEDGDVLRKLPCLHLFHQKCVDEWLHLSVSCPLCKRSAREGLRRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPXXXXXAPTRTPTPVGAWFRGLPPSLARLFAHSGDGXXXXXXXXXXXXXXXXXXXXXXXGEEKFDDDRGDTGNDDGSPLDGETRRMRVLNANIAAFFGGAEPSP-HVSPESLGSSSPGGSIXXXXXXXXXXXXXXXXXXXXXXRGVFGGNRFXXXXXXXXXXXXASAEYELAPIGP 919
BLAST of mRNA_E-siliculosus-1a_F_contig1274.1683.1 vs. uniprot
Match: D7FI05_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI05_ECTSI) HSP 1 Score: 242 bits (618), Expect = 1.880e-69 Identity = 177/190 (93.16%), Postives = 181/190 (95.26%), Query Frame = 1
Query: 1 DDEAFIAQGAEAASSADCAICLGGFEEGDVLRKLPCLHFFHQKCVDEWLHLSVSCPLCKRSARDGLRRNRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPVGAWFRGLPSSLARLFAHSGDDXXXXXXXXXXXXX--WQRVDDDVSDGEEKFDDDRGDTGNDDGSPLDGETRRMRVLNANIA 564
DDEAFIAQGAEAASSADCAICLGGFEEGDVLRKLPCLHFFHQKCVDEWLHLSVSCPLCKRSAR+GLRRN XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPVGAWFRGLPSSLARLFAHSGD XXXXXXXXXXX WQRVDDD S+GEEK DDDRGDTG+D+ SPLDGETRRMRVLNANIA
Sbjct: 1163 DDEAFIAQGAEAASSADCAICLGGFEEGDVLRKLPCLHFFHQKCVDEWLHLSVSCPLCKRSAREGLRRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPVGAWFRGLPSSLARLFAHSGDGXXXXXXXXXXXGRRQWQRVDDDGSNGEEKLDDDRGDTGHDEDSPLDGETRRMRVLNANIA 1352
BLAST of mRNA_E-siliculosus-1a_F_contig1274.1683.1 vs. uniprot
Match: A0A5B8MYU6_9CHLO (RING-type E3 ubiquitin transferase n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MYU6_9CHLO) HSP 1 Score: 77.4 bits (189), Expect = 6.360e-13 Identity = 29/51 (56.86%), Postives = 38/51 (74.51%), Query Frame = 1
Query: 49 DCAICLGGFEEGDVLRKLPCLHFFHQKCVDEWLHLSVSCPLCKRSARDGLR 201
DC++C+ FEEGD +R+LPC H FH +CVDEWL L SCP+C+ RD L+
Sbjct: 112 DCSVCMEAFEEGDRIRELPCGHMFHLECVDEWLKLHPSCPICREDVRDALK 162
BLAST of mRNA_E-siliculosus-1a_F_contig1274.1683.1 vs. uniprot
Match: A0A2G5BKA4_COERN (RING-type domain-containing protein n=1 Tax=Coemansia reversa (strain ATCC 12441 / NRRL 1564) TaxID=763665 RepID=A0A2G5BKA4_COERN) HSP 1 Score: 77.4 bits (189), Expect = 1.030e-12 Identity = 30/43 (69.77%), Postives = 36/43 (83.72%), Query Frame = 1
Query: 52 CAICLGGFEEGDVLRKLPCLHFFHQKCVDEWLHLSVSCPLCKR 180
CAICL +++GD+LR LPC H HQKCVDEWLH++ SCPLCKR
Sbjct: 257 CAICLCEYDDGDILRLLPCNHHLHQKCVDEWLHINQSCPLCKR 299
BLAST of mRNA_E-siliculosus-1a_F_contig1274.1683.1 vs. uniprot
Match: A0A0A9DQ84_ARUDO (RING-type domain-containing protein n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9DQ84_ARUDO) HSP 1 Score: 71.6 bits (174), Expect = 1.190e-12 Identity = 27/52 (51.92%), Postives = 38/52 (73.08%), Query Frame = 1
Query: 34 AASSADCAICLGGFEEGDVLRKLPCLHFFHQKCVDEWLHLSVSCPLCKRSAR 189
AA + +C ICL +++G LR+LPC H FH C+D+WLH++ +CPLCK S R
Sbjct: 15 AAEAMECCICLSAYDDGAELRELPCGHHFHCACIDKWLHINATCPLCKYSVR 66
BLAST of mRNA_E-siliculosus-1a_F_contig1274.1683.1 vs. uniprot
Match: A0A1Y1VZL6_9FUNG (RING-type domain-containing protein n=1 Tax=Linderina pennispora TaxID=61395 RepID=A0A1Y1VZL6_9FUNG) HSP 1 Score: 76.6 bits (187), Expect = 2.390e-12 Identity = 32/48 (66.67%), Postives = 36/48 (75.00%), Query Frame = 1
Query: 52 CAICLGGFEEGDVLRKLPCLHFFHQKCVDEWLHLSVSCPLCKRSARDG 195
CAICL +E GDVLR LPC H HQ CVDEWLH++ +CPLCKR A G
Sbjct: 284 CAICLCEYENGDVLRLLPCGHHMHQSCVDEWLHINRTCPLCKRVATPG 331
BLAST of mRNA_E-siliculosus-1a_F_contig1274.1683.1 vs. uniprot
Match: A0A4P9XK66_9FUNG (RING-type domain-containing protein (Fragment) n=1 Tax=Thamnocephalis sphaerospora TaxID=78915 RepID=A0A4P9XK66_9FUNG) HSP 1 Score: 73.2 bits (178), Expect = 3.220e-12 Identity = 28/53 (52.83%), Postives = 40/53 (75.47%), Query Frame = 1
Query: 52 CAICLGGFEEGDVLRKLPCLHFFHQKCVDEWLHLSVSCPLCKRSARDGLRRNR 210
C+ICL +EEG+ LR+L C H+FHQ CVD+WLH++ CP+CK++ LR N+
Sbjct: 91 CSICLADYEEGETLRQLQCHHYFHQSCVDQWLHINAHCPVCKQAL---LRSNK 140
BLAST of mRNA_E-siliculosus-1a_F_contig1274.1683.1 vs. uniprot
Match: A0A261Y600_9FUNG (RING-type domain-containing protein n=1 Tax=Bifiguratus adelaidae TaxID=1938954 RepID=A0A261Y600_9FUNG) HSP 1 Score: 75.9 bits (185), Expect = 3.540e-12 Identity = 31/50 (62.00%), Postives = 39/50 (78.00%), Query Frame = 1
Query: 37 ASSADCAICLGGFEEGDVLRKLPCLHFFHQKCVDEWLHLSVSCPLCKRSA 186
A A CAIC+ +E+GD+LR LPC H FHQ CVDEW+ L+ +CPLCK+SA
Sbjct: 289 AQDAVCAICICDYEQGDLLRLLPCRHHFHQSCVDEWMSLNRACPLCKQSA 338
BLAST of mRNA_E-siliculosus-1a_F_contig1274.1683.1 vs. uniprot
Match: A0A2P2ISY0_RHIMU (Cleavage and polyadenylation specificity factor n=1 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2ISY0_RHIMU) HSP 1 Score: 69.7 bits (169), Expect = 6.080e-12 Identity = 27/55 (49.09%), Postives = 39/55 (70.91%), Query Frame = 1
Query: 46 ADCAICLGGFEEGDVLRKLPCLHFFHQKCVDEWLHLSVSCPLCKRSARDGLRRNR 210
A+C ICL +++GD LR+LPC H FH CVD+WL+++ +CPLCK R++R
Sbjct: 19 AECCICLCAYDDGDELRELPCSHHFHSACVDKWLYINSTCPLCKYDILKCSRQDR 73
BLAST of mRNA_E-siliculosus-1a_F_contig1274.1683.1 vs. uniprot
Match: A0A2I0AD46_9ASPA (RING-H2 finger protein ATL79 n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2I0AD46_9ASPA) HSP 1 Score: 71.6 bits (174), Expect = 7.880e-12 Identity = 32/55 (58.18%), Postives = 39/55 (70.91%), Query Frame = 1
Query: 28 AEAASSADCAICLGGFEEGDVLRKLP-CLHFFHQKCVDEWLHLSVSCPLCKRSAR 189
A A A+CAICL GF +GD++R LP C H FH KCVD+WL + SCP C+RS R
Sbjct: 93 AGAGGHAECAICLCGFSDGDLVRVLPSCSHVFHLKCVDQWLSSNASCPSCRRSCR 147 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1274.1683.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1274.1683.1 >prot_E-siliculosus-1a_F_contig1274.1683.1 ID=prot_E-siliculosus-1a_F_contig1274.1683.1|Name=mRNA_E-siliculosus-1a_F_contig1274.1683.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=270bp DDEAFIAQGAEAASSADCAICLGGFEEGDVLRKLPCLHFFHQKCVDEWLHback to top mRNA from alignment at E-siliculosus-1a_F_contig1274:32335..33681- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1274.1683.1 ID=mRNA_E-siliculosus-1a_F_contig1274.1683.1|Name=mRNA_E-siliculosus-1a_F_contig1274.1683.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1347bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1274:32335..33681- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1274:32335..33681- >mRNA_E-siliculosus-1a_F_contig1274.1683.1 ID=mRNA_E-siliculosus-1a_F_contig1274.1683.1|Name=mRNA_E-siliculosus-1a_F_contig1274.1683.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1620bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1274:32335..33681- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |