prot_E-siliculosus-1a_F_contig12683.1648.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig12683.1648.1
Unique Nameprot_E-siliculosus-1a_F_contig12683.1648.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length97
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig12683.1648.1 vs. uniprot
Match: D8LST1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LST1_ECTSI)

HSP 1 Score: 145 bits (365), Expect = 8.970e-41
Identity = 92/93 (98.92%), Postives = 92/93 (98.92%), Query Frame = 0
Query:    5 RASIPCQALRAASSKXXXXXXXXXXXXXAQAAVAARNPVYPIAEALDLVKDGAKANFDETVEVAMVLNVDPRKANQTVRGTVQLPKGSGKTVR 97
            RA IPCQALRAASSKXXXXXXXXXXXXXAQAAVAARNPVYPIAEALDLVKDGAKANFDETVEVAMVLNVDPRKANQTVRGTVQLPKGSGKTVR
Sbjct:   15 RAIIPCQALRAASSKXXXXXXXXXXXXXAQAAVAARNPVYPIAEALDLVKDGAKANFDETVEVAMVLNVDPRKANQTVRGTVQLPKGSGKTVR 107          
BLAST of mRNA_E-siliculosus-1a_F_contig12683.1648.1 vs. uniprot
Match: A0A255GRH8_9ACTN (50S ribosomal protein L1 n=3 Tax=Propionibacteriaceae TaxID=31957 RepID=A0A255GRH8_9ACTN)

HSP 1 Score: 79.3 bits (194), Expect = 5.410e-16
Identity = 39/55 (70.91%), Postives = 45/55 (81.82%), Query Frame = 0
Query:   43 VYPIAEALDLVKDGAKANFDETVEVAMVLNVDPRKANQTVRGTVQLPKGSGKTVR 97
            +Y  AEA+DL+KDGA A FDETV+VAM L VDPRKA+Q VRGTV LP G+GKT R
Sbjct:   19 LYTPAEAVDLIKDGASAKFDETVDVAMRLGVDPRKADQMVRGTVNLPNGTGKTAR 73          
BLAST of mRNA_E-siliculosus-1a_F_contig12683.1648.1 vs. uniprot
Match: UPI001C5B1C06 (50S ribosomal protein L1 n=1 Tax=Stakelama flava TaxID=2860338 RepID=UPI001C5B1C06)

HSP 1 Score: 79.0 bits (193), Expect = 7.470e-16
Identity = 38/57 (66.67%), Postives = 45/57 (78.95%), Query Frame = 0
Query:   41 NPVYPIAEALDLVKDGAKANFDETVEVAMVLNVDPRKANQTVRGTVQLPKGSGKTVR 97
            N +Y +AEA+DL+K  A A FDET+EVAM L VDPR A+Q VRG V LPKG+GKTVR
Sbjct:   18 NKLYDVAEAIDLIKKNANAKFDETIEVAMNLGVDPRHADQMVRGVVSLPKGTGKTVR 74          
BLAST of mRNA_E-siliculosus-1a_F_contig12683.1648.1 vs. uniprot
Match: A0A367YW07_9ACTN (50S ribosomal protein L1 n=2 Tax=Desertihabitans TaxID=2676837 RepID=A0A367YW07_9ACTN)

HSP 1 Score: 79.0 bits (193), Expect = 7.590e-16
Identity = 40/55 (72.73%), Postives = 44/55 (80.00%), Query Frame = 0
Query:   43 VYPIAEALDLVKDGAKANFDETVEVAMVLNVDPRKANQTVRGTVQLPKGSGKTVR 97
            VYP  EA+ LVK GAKA FDETVEVA+ L VDPRKA+Q VRGTV LP G+GKT R
Sbjct:   19 VYPPKEAIGLVKSGAKAKFDETVEVAIRLGVDPRKADQMVRGTVNLPNGTGKTAR 73          
BLAST of mRNA_E-siliculosus-1a_F_contig12683.1648.1 vs. uniprot
Match: UPI001F01ED20 (50S ribosomal protein L1 n=1 Tax=Pleomorphomonas sp. COJ-58 TaxID=2766474 RepID=UPI001F01ED20)

HSP 1 Score: 78.2 bits (191), Expect = 1.450e-15
Identity = 39/58 (67.24%), Postives = 46/58 (79.31%), Query Frame = 0
Query:   40 RNPVYPIAEALDLVKDGAKANFDETVEVAMVLNVDPRKANQTVRGTVQLPKGSGKTVR 97
            R  +YP+ EA+ LVK+ AKA FDETVEVA+ L VDPR A+Q VRG VQLP G+GKTVR
Sbjct:   17 RKKLYPVTEAVALVKERAKAKFDETVEVAINLGVDPRHADQMVRGVVQLPNGTGKTVR 74          
BLAST of mRNA_E-siliculosus-1a_F_contig12683.1648.1 vs. uniprot
Match: A0A3B9FEG3_9PROT (50S ribosomal protein L1 (Fragment) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3B9FEG3_9PROT)

HSP 1 Score: 73.9 bits (180), Expect = 2.050e-15
Identity = 39/66 (59.09%), Postives = 49/66 (74.24%), Query Frame = 0
Query:   34 QAAVAA--RNPVYPIAEALDLVKDGAKANFDETVEVAMVLNVDPRKANQTVRGTVQLPKGSGKTVR 97
            +AA AA  RN  Y +AEA+ LVK  AKA FDET+E++M L VDPR A+Q VRG V +P G+GKT+R
Sbjct:    9 KAAYAAIDRNKAYELAEAVALVKSNAKAKFDETIEISMNLGVDPRHADQMVRGVVAMPNGTGKTMR 74          
BLAST of mRNA_E-siliculosus-1a_F_contig12683.1648.1 vs. uniprot
Match: A0A523FMB8_9PROT (50S ribosomal protein L1 n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A523FMB8_9PROT)

HSP 1 Score: 77.4 bits (189), Expect = 2.800e-15
Identity = 39/58 (67.24%), Postives = 45/58 (77.59%), Query Frame = 0
Query:   40 RNPVYPIAEALDLVKDGAKANFDETVEVAMVLNVDPRKANQTVRGTVQLPKGSGKTVR 97
            R  +YP+ EA+ LVK+GA A FDETVEVAM L VDPR A+Q VRG V LP G+GKTVR
Sbjct:   17 REKLYPLEEAVKLVKNGATAKFDETVEVAMRLGVDPRHADQMVRGVVSLPHGTGKTVR 74          
BLAST of mRNA_E-siliculosus-1a_F_contig12683.1648.1 vs. uniprot
Match: A0A7C9QT59_9PROT (50S ribosomal protein L1 n=1 Tax=Magnetospirillum aberrantis SpK TaxID=908842 RepID=A0A7C9QT59_9PROT)

HSP 1 Score: 77.4 bits (189), Expect = 2.800e-15
Identity = 36/58 (62.07%), Postives = 46/58 (79.31%), Query Frame = 0
Query:   40 RNPVYPIAEALDLVKDGAKANFDETVEVAMVLNVDPRKANQTVRGTVQLPKGSGKTVR 97
            RN  Y + EA+ L+KDGAKA FDET+E+A+ L VDPR A+Q VRG ++LP G+GKTVR
Sbjct:   16 RNKFYSLDEAVALIKDGAKAKFDETIEIALNLGVDPRHADQMVRGVIELPHGTGKTVR 73          
BLAST of mRNA_E-siliculosus-1a_F_contig12683.1648.1 vs. uniprot
Match: A0A562SCW6_9HYPH (50S ribosomal protein L1 n=2 Tax=Roseibium TaxID=150830 RepID=A0A562SCW6_9HYPH)

HSP 1 Score: 77.4 bits (189), Expect = 2.840e-15
Identity = 38/58 (65.52%), Postives = 45/58 (77.59%), Query Frame = 0
Query:   40 RNPVYPIAEALDLVKDGAKANFDETVEVAMVLNVDPRKANQTVRGTVQLPKGSGKTVR 97
            RN +YP++EAL L+KD AK  FDETVEVA+ L VDPR A+Q VRG   LP G+GKTVR
Sbjct:   17 RNKLYPLSEALSLIKDRAKTKFDETVEVAINLGVDPRHADQMVRGVCVLPNGTGKTVR 74          
BLAST of mRNA_E-siliculosus-1a_F_contig12683.1648.1 vs. uniprot
Match: UPI0019CB5DCB (50S ribosomal protein L1 n=1 Tax=Sphingomonadaceae bacterium TaxID=1930536 RepID=UPI0019CB5DCB)

HSP 1 Score: 74.7 bits (182), Expect = 2.960e-15
Identity = 39/65 (60.00%), Postives = 47/65 (72.31%), Query Frame = 0
Query:   33 AQAAVAARNPVYPIAEALDLVKDGAKANFDETVEVAMVLNVDPRKANQTVRGTVQLPKGSGKTVR 97
            AQA+   R  +YP+  AL +VK  A A FDET+EVA+ LNVDPR A+Q VRG V LPK +GKTVR
Sbjct:    9 AQASTIDREKLYPLDTALGIVKANATAKFDETIEVAIGLNVDPRHADQMVRGVVTLPKSTGKTVR 73          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig12683.1648.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LST1_ECTSI8.970e-4198.92Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A255GRH8_9ACTN5.410e-1670.9150S ribosomal protein L1 n=3 Tax=Propionibacteriac... [more]
UPI001C5B1C067.470e-1666.6750S ribosomal protein L1 n=1 Tax=Stakelama flava T... [more]
A0A367YW07_9ACTN7.590e-1672.7350S ribosomal protein L1 n=2 Tax=Desertihabitans T... [more]
UPI001F01ED201.450e-1567.2450S ribosomal protein L1 n=1 Tax=Pleomorphomonas s... [more]
A0A3B9FEG3_9PROT2.050e-1559.0950S ribosomal protein L1 (Fragment) n=1 Tax=Alphap... [more]
A0A523FMB8_9PROT2.800e-1567.2450S ribosomal protein L1 n=1 Tax=Alphaproteobacter... [more]
A0A7C9QT59_9PROT2.800e-1562.0750S ribosomal protein L1 n=1 Tax=Magnetospirillum ... [more]
A0A562SCW6_9HYPH2.840e-1565.5250S ribosomal protein L1 n=2 Tax=Roseibium TaxID=1... [more]
UPI0019CB5DCB2.960e-1560.0050S ribosomal protein L1 n=1 Tax=Sphingomonadaceae... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.190.20coord: 43..97
e-value: 3.3E-24
score: 87.2
NoneNo IPR availablePANTHERPTHR23105RIBOSOMAL PROTEIN L7AE FAMILY MEMBERcoord: 34..97
NoneNo IPR availablePANTHERPTHR23105:SF115coord: 34..97
IPR023674Ribosomal protein L1-likeSUPERFAMILY56808Ribosomal protein L1coord: 34..97

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig12683contigE-siliculosus-1a_F_contig12683:193..1039 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig12683.1648.1mRNA_E-siliculosus-1a_F_contig12683.1648.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig12683 193..1039 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig12683.1648.1 ID=prot_E-siliculosus-1a_F_contig12683.1648.1|Name=mRNA_E-siliculosus-1a_F_contig12683.1648.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=97bp
RAPSRASIPCQALRAASSKSKNKNRRKASPTQAQAAVAARNPVYPIAEAL
DLVKDGAKANFDETVEVAMVLNVDPRKANQTVRGTVQLPKGSGKTVR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR023674Ribosomal_L1-like