mRNA_E-siliculosus-1a_F_contig12683.1648.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig12683.1648.1
Unique NamemRNA_E-siliculosus-1a_F_contig12683.1648.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig12683.1648.1 vs. uniprot
Match: D8LST1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LST1_ECTSI)

HSP 1 Score: 145 bits (365), Expect = 8.970e-41
Identity = 92/93 (98.92%), Postives = 92/93 (98.92%), Query Frame = 1 
Query:   13 RASIPCQALRAASSKXXXXXXXXXXXXXAQAAVAARNPVYPIAEALDLVKDGAKANFDETVEVAMVLNVDPRKANQTVRGTVQLPKGSGKTVR 291
            RA IPCQALRAASSKXXXXXXXXXXXXXAQAAVAARNPVYPIAEALDLVKDGAKANFDETVEVAMVLNVDPRKANQTVRGTVQLPKGSGKTVR
Sbjct:   15 RAIIPCQALRAASSKXXXXXXXXXXXXXAQAAVAARNPVYPIAEALDLVKDGAKANFDETVEVAMVLNVDPRKANQTVRGTVQLPKGSGKTVR 107
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BLAST of mRNA_E-siliculosus-1a_F_contig12683.1648.1 vs. uniprot
Match: A0A255GRH8_9ACTN (50S ribosomal protein L1 n=3 Tax=Propionibacteriaceae TaxID=31957 RepID=A0A255GRH8_9ACTN)

HSP 1 Score: 79.3 bits (194), Expect = 5.410e-16
Identity = 39/55 (70.91%), Postives = 45/55 (81.82%), Query Frame = 1 
Query:  127 VYPIAEALDLVKDGAKANFDETVEVAMVLNVDPRKANQTVRGTVQLPKGSGKTVR 291
            +Y  AEA+DL+KDGA A FDETV+VAM L VDPRKA+Q VRGTV LP G+GKT R
Sbjct:   19 LYTPAEAVDLIKDGASAKFDETVDVAMRLGVDPRKADQMVRGTVNLPNGTGKTAR 73
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BLAST of mRNA_E-siliculosus-1a_F_contig12683.1648.1 vs. uniprot
Match: UPI001C5B1C06 (50S ribosomal protein L1 n=1 Tax=Stakelama flava TaxID=2860338 RepID=UPI001C5B1C06)

HSP 1 Score: 79.0 bits (193), Expect = 7.470e-16
Identity = 38/57 (66.67%), Postives = 45/57 (78.95%), Query Frame = 1 
Query:  121 NPVYPIAEALDLVKDGAKANFDETVEVAMVLNVDPRKANQTVRGTVQLPKGSGKTVR 291
            N +Y +AEA+DL+K  A A FDET+EVAM L VDPR A+Q VRG V LPKG+GKTVR
Sbjct:   18 NKLYDVAEAIDLIKKNANAKFDETIEVAMNLGVDPRHADQMVRGVVSLPKGTGKTVR 74
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BLAST of mRNA_E-siliculosus-1a_F_contig12683.1648.1 vs. uniprot
Match: A0A367YW07_9ACTN (50S ribosomal protein L1 n=2 Tax=Desertihabitans TaxID=2676837 RepID=A0A367YW07_9ACTN)

HSP 1 Score: 79.0 bits (193), Expect = 7.590e-16
Identity = 40/55 (72.73%), Postives = 44/55 (80.00%), Query Frame = 1 
Query:  127 VYPIAEALDLVKDGAKANFDETVEVAMVLNVDPRKANQTVRGTVQLPKGSGKTVR 291
            VYP  EA+ LVK GAKA FDETVEVA+ L VDPRKA+Q VRGTV LP G+GKT R
Sbjct:   19 VYPPKEAIGLVKSGAKAKFDETVEVAIRLGVDPRKADQMVRGTVNLPNGTGKTAR 73
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BLAST of mRNA_E-siliculosus-1a_F_contig12683.1648.1 vs. uniprot
Match: UPI001F01ED20 (50S ribosomal protein L1 n=1 Tax=Pleomorphomonas sp. COJ-58 TaxID=2766474 RepID=UPI001F01ED20)

HSP 1 Score: 78.2 bits (191), Expect = 1.450e-15
Identity = 39/58 (67.24%), Postives = 46/58 (79.31%), Query Frame = 1 
Query:  118 RNPVYPIAEALDLVKDGAKANFDETVEVAMVLNVDPRKANQTVRGTVQLPKGSGKTVR 291
            R  +YP+ EA+ LVK+ AKA FDETVEVA+ L VDPR A+Q VRG VQLP G+GKTVR
Sbjct:   17 RKKLYPVTEAVALVKERAKAKFDETVEVAINLGVDPRHADQMVRGVVQLPNGTGKTVR 74
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BLAST of mRNA_E-siliculosus-1a_F_contig12683.1648.1 vs. uniprot
Match: A0A3B9FEG3_9PROT (50S ribosomal protein L1 (Fragment) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3B9FEG3_9PROT)

HSP 1 Score: 73.9 bits (180), Expect = 2.050e-15
Identity = 39/66 (59.09%), Postives = 49/66 (74.24%), Query Frame = 1 
Query:  100 QAAVAA--RNPVYPIAEALDLVKDGAKANFDETVEVAMVLNVDPRKANQTVRGTVQLPKGSGKTVR 291
            +AA AA  RN  Y +AEA+ LVK  AKA FDET+E++M L VDPR A+Q VRG V +P G+GKT+R
Sbjct:    9 KAAYAAIDRNKAYELAEAVALVKSNAKAKFDETIEISMNLGVDPRHADQMVRGVVAMPNGTGKTMR 74
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BLAST of mRNA_E-siliculosus-1a_F_contig12683.1648.1 vs. uniprot
Match: A0A523FMB8_9PROT (50S ribosomal protein L1 n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A523FMB8_9PROT)

HSP 1 Score: 77.4 bits (189), Expect = 2.800e-15
Identity = 39/58 (67.24%), Postives = 45/58 (77.59%), Query Frame = 1 
Query:  118 RNPVYPIAEALDLVKDGAKANFDETVEVAMVLNVDPRKANQTVRGTVQLPKGSGKTVR 291
            R  +YP+ EA+ LVK+GA A FDETVEVAM L VDPR A+Q VRG V LP G+GKTVR
Sbjct:   17 REKLYPLEEAVKLVKNGATAKFDETVEVAMRLGVDPRHADQMVRGVVSLPHGTGKTVR 74
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BLAST of mRNA_E-siliculosus-1a_F_contig12683.1648.1 vs. uniprot
Match: A0A7C9QT59_9PROT (50S ribosomal protein L1 n=1 Tax=Magnetospirillum aberrantis SpK TaxID=908842 RepID=A0A7C9QT59_9PROT)

HSP 1 Score: 77.4 bits (189), Expect = 2.800e-15
Identity = 36/58 (62.07%), Postives = 46/58 (79.31%), Query Frame = 1 
Query:  118 RNPVYPIAEALDLVKDGAKANFDETVEVAMVLNVDPRKANQTVRGTVQLPKGSGKTVR 291
            RN  Y + EA+ L+KDGAKA FDET+E+A+ L VDPR A+Q VRG ++LP G+GKTVR
Sbjct:   16 RNKFYSLDEAVALIKDGAKAKFDETIEIALNLGVDPRHADQMVRGVIELPHGTGKTVR 73
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BLAST of mRNA_E-siliculosus-1a_F_contig12683.1648.1 vs. uniprot
Match: A0A562SCW6_9HYPH (50S ribosomal protein L1 n=2 Tax=Roseibium TaxID=150830 RepID=A0A562SCW6_9HYPH)

HSP 1 Score: 77.4 bits (189), Expect = 2.840e-15
Identity = 38/58 (65.52%), Postives = 45/58 (77.59%), Query Frame = 1 
Query:  118 RNPVYPIAEALDLVKDGAKANFDETVEVAMVLNVDPRKANQTVRGTVQLPKGSGKTVR 291
            RN +YP++EAL L+KD AK  FDETVEVA+ L VDPR A+Q VRG   LP G+GKTVR
Sbjct:   17 RNKLYPLSEALSLIKDRAKTKFDETVEVAINLGVDPRHADQMVRGVCVLPNGTGKTVR 74
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BLAST of mRNA_E-siliculosus-1a_F_contig12683.1648.1 vs. uniprot
Match: UPI0019CB5DCB (50S ribosomal protein L1 n=1 Tax=Sphingomonadaceae bacterium TaxID=1930536 RepID=UPI0019CB5DCB)

HSP 1 Score: 74.7 bits (182), Expect = 2.960e-15
Identity = 39/65 (60.00%), Postives = 47/65 (72.31%), Query Frame = 1 
Query:   97 AQAAVAARNPVYPIAEALDLVKDGAKANFDETVEVAMVLNVDPRKANQTVRGTVQLPKGSGKTVR 291
            AQA+   R  +YP+  AL +VK  A A FDET+EVA+ LNVDPR A+Q VRG V LPK +GKTVR
Sbjct:    9 AQASTIDREKLYPLDTALGIVKANATAKFDETIEVAIGLNVDPRHADQMVRGVVTLPKSTGKTVR 73
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig12683.1648.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LST1_ECTSI8.970e-4198.92Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A255GRH8_9ACTN5.410e-1670.9150S ribosomal protein L1 n=3 Tax=Propionibacteriac... [more]
UPI001C5B1C067.470e-1666.6750S ribosomal protein L1 n=1 Tax=Stakelama flava T... [more]
A0A367YW07_9ACTN7.590e-1672.7350S ribosomal protein L1 n=2 Tax=Desertihabitans T... [more]
UPI001F01ED201.450e-1567.2450S ribosomal protein L1 n=1 Tax=Pleomorphomonas s... [more]
A0A3B9FEG3_9PROT2.050e-1559.0950S ribosomal protein L1 (Fragment) n=1 Tax=Alphap... [more]
A0A523FMB8_9PROT2.800e-1567.2450S ribosomal protein L1 n=1 Tax=Alphaproteobacter... [more]
A0A7C9QT59_9PROT2.800e-1562.0750S ribosomal protein L1 n=1 Tax=Magnetospirillum ... [more]
A0A562SCW6_9HYPH2.840e-1565.5250S ribosomal protein L1 n=2 Tax=Roseibium TaxID=1... [more]
UPI0019CB5DCB2.960e-1560.0050S ribosomal protein L1 n=1 Tax=Sphingomonadaceae... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig12683contigE-siliculosus-1a_F_contig12683:193..1039 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size291
Model size291
Exons2
Ec32 orthologEc-15_002720.1
Ec32 ortholog descriptionRibosomal protein L1/ribosomal biogenesis protein
Hectar predicted targeting categorymitochondrion
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko03011
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.J
EC6.3.4.10,6.3.4.11,6.3.4.15,6.3.4.9
EggNOG OGsCOG0081@1,KOG1569@2759
EggNOG free text desc.structural constituent of ribosome
GOsGO:0000313,GO:0000315,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005761,GO:0005762,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0031974,GO:0032543,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0070013,GO:0071704,GO:0098798,GO:0140053,GO:1901564,GO:1901566,GO:1901576,GO:1990904
KEGG ModuleM00178,M00179
KEGG Pathwayko00780,ko01100,ko03010,map00780,map01100,map03010
KEGG ReactionR01074,R05145
KEGG koko:K01942,ko:K02863
KEGG rclassRC00043,RC00070,RC00096,RC02896
Preferred nameMRPL1
Seed eggNOG ortholog2880.D8LST1
Seed ortholog evalue7.1e-33
Seed ortholog score146.4
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927791.8696544-CDS-E-siliculosus-1a_F_contig12683:192..3901622927791.8696544-CDS-E-siliculosus-1a_F_contig12683:192..390Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12683 193..390 +
1696318680.8742979-CDS-E-siliculosus-1a_F_contig12683:192..3901696318680.8742979-CDS-E-siliculosus-1a_F_contig12683:192..390Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12683 193..390 +
1622927791.9059424-CDS-E-siliculosus-1a_F_contig12683:946..10391622927791.9059424-CDS-E-siliculosus-1a_F_contig12683:946..1039Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12683 947..1039 +
1696318680.8873172-CDS-E-siliculosus-1a_F_contig12683:946..10391696318680.8873172-CDS-E-siliculosus-1a_F_contig12683:946..1039Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12683 947..1039 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig12683.1648.1prot_E-siliculosus-1a_F_contig12683.1648.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig12683 193..1039 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig12683.1648.1

>prot_E-siliculosus-1a_F_contig12683.1648.1 ID=prot_E-siliculosus-1a_F_contig12683.1648.1|Name=mRNA_E-siliculosus-1a_F_contig12683.1648.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=97bp
RAPSRASIPCQALRAASSKSKNKNRRKASPTQAQAAVAARNPVYPIAEAL
DLVKDGAKANFDETVEVAMVLNVDPRKANQTVRGTVQLPKGSGKTVR
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mRNA from alignment at E-siliculosus-1a_F_contig12683:193..1039+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig12683.1648.1 ID=mRNA_E-siliculosus-1a_F_contig12683.1648.1|Name=mRNA_E-siliculosus-1a_F_contig12683.1648.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=847bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12683:193..1039+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CGCGCACCCAGCAGAGCTAGCATCCCCTGTCAAGCGCTGCGCGCGGCGTC
TTCCAAGTCCAAGAACAAGAACCGCAGAAAGGCTTCGCCGACCCAGGCGC
AGGCGGCGGTCGCCGCCCGCAACCCTGTGTACCCCATCGCCGAGGCGTTG
GATCTGGTGAAGGACGGCGCCAAGGCCAACTTCGACGAGACTGTCGAGGT
GTGAATTTCGTGGGGAAAGACAACCGTAGAAAAGAACTGATAGTCTCGAA
CTGGTAGTCTTTCTGCGTGTTTCGTGTGTATAATTTCTATGACACATGAA
GCAATACTCCGTATTGTGGTATTGTCGAGGTGCGAATTTTCTCCAAGACA
ACCCGCAGTAAAAGCATGTGGTATCCTATCTGTCTCTGGTTTTTATTGTT
TTGCGGACCCTGCGGGTCCAATTTGTTCGAGTTACCTTTTTGAGGGTGAG
TTGTAGCCTGCAACCACGGGAATTGACCCGTCAAGTGGTAACCCAGCACG
GACAGATGGAAGTACTGGGCAGAGAGATCGGCACGTTTTATATGTGAGTA
TAACAACAACACCGTAAGGTAGCTCTCCCGCCTGAGGGTTCGAGTAGCCG
ACCCGTTCTGGTGTGTAAGATGTCTTGGTATTGTGCGCTACGGCTTTCGC
AACCCCAATCTTGCTCTCGCTCTTCCGGTGCTTCTGGGTGACGATGCTTT
ACTCCGACCTTCGAACTCCCTGCCGGGCTTTTTGTGGTCGTTTTCTGCTT
CAAGGTGGCGATGGTGCTTAACGTGGACCCCCGAAAGGCAAACCAGACCG
TCCGGGGCACCGTGCAGCTGCCGAAAGGTAGCGGGAAGACGGTGAGG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig12683:193..1039+

>mRNA_E-siliculosus-1a_F_contig12683.1648.1 ID=mRNA_E-siliculosus-1a_F_contig12683.1648.1|Name=mRNA_E-siliculosus-1a_F_contig12683.1648.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=582bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12683:193..1039+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CGCGCACCCAGCAGAGCTAGCATCCCCTGTCAAGCGCTGCGCGCGGCGTC
TTCCAAGTCCAAGAACAAGAACCGCAGAAAGGCTTCGCCGACCCAGGCGC
AGGCGGCGGTCGCCGCCCGCAACCCTGTGTACCCCATCGCCGAGGCGTTG
GATCTGGTGAAGGACGGCGCCAAGGCCAACTTCGACGAGACTGTCGAGCG
CGCACCCAGCAGAGCTAGCATCCCCTGTCAAGCGCTGCGCGCGGCGTCTT
CCAAGTCCAAGAACAAGAACCGCAGAAAGGCTTCGCCGACCCAGGCGCAG
GCGGCGGTCGCCGCCCGCAACCCTGTGTACCCCATCGCCGAGGCGTTGGA
TCTGGTGAAGGACGGCGCCAAGGCCAACTTCGACGAGACTGTCGAGGTGG
CGATGGTGCTTAACGTGGACCCCCGAAAGGCAAACCAGACCGTCCGGGGC
ACCGTGCAGCTGCCGAAAGGTAGCGGGAAGACGGTGAGGGTGGCGATGGT
GCTTAACGTGGACCCCCGAAAGGCAAACCAGACCGTCCGGGGCACCGTGC
AGCTGCCGAAAGGTAGCGGGAAGACGGTGAGG
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